Wall clock time and date at job start Tue Mar 31 2020 13:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46921 * 2 1 4 4 C 1.52994 * 109.47195 * 240.00496 * 2 1 3 5 5 C 1.52996 * 109.47495 * 120.00090 * 2 1 3 6 6 H 1.08995 * 109.47738 * 180.02562 * 5 2 1 7 7 N 1.46905 * 109.46959 * 300.00257 * 5 2 1 8 8 C 1.50706 * 109.46791 * 59.99865 * 5 2 1 9 9 O 1.21294 * 119.99882 * 260.00054 * 8 5 2 10 10 N 1.34772 * 119.99760 * 80.00597 * 8 5 2 11 11 C 1.40141 * 119.99910 * 185.53784 * 10 8 5 12 12 C 1.38647 * 120.10055 * 24.81932 * 11 10 8 13 13 C 1.38247 * 120.01184 * 180.02562 * 12 11 10 14 14 C 1.38305 * 120.20845 * 359.94963 * 13 12 11 15 15 C 1.38200 * 120.19676 * 0.02562 * 14 13 12 16 16 C 1.38785 * 119.99191 * 0.02562 * 15 14 13 17 17 S 1.76200 * 120.10477 * 179.97438 * 16 15 14 18 18 C 1.81395 * 102.99937 * 359.97438 * 17 16 15 19 19 C 1.50703 * 109.47315 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99701 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00530 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99643 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00282 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47009 * 60.00206 * 23 21 19 25 25 H 1.48495 * 109.46967 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47043 * 300.00345 * 23 21 19 27 27 H 1.08997 * 109.47094 * 299.99910 * 1 2 3 28 28 H 1.09004 * 109.47349 * 60.00195 * 1 2 3 29 29 H 1.09005 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46971 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47085 * 300.00222 * 3 2 1 32 32 H 1.08997 * 109.47163 * 60.00132 * 3 2 1 33 33 H 1.09005 * 109.47102 * 299.99996 * 4 2 1 34 34 H 1.09004 * 109.47536 * 59.99424 * 4 2 1 35 35 H 1.09003 * 109.47425 * 179.97438 * 4 2 1 36 36 H 1.00905 * 111.00072 * 60.00143 * 7 5 2 37 37 H 1.00895 * 110.99823 * 183.95020 * 7 5 2 38 38 H 0.97006 * 119.99933 * 5.53791 * 10 8 5 39 39 H 1.08003 * 119.99457 * 359.97438 * 12 11 10 40 40 H 1.07997 * 119.90103 * 179.97438 * 13 12 11 41 41 H 1.07995 * 119.90251 * 180.02562 * 14 13 12 42 42 H 1.08004 * 120.00416 * 179.73769 * 15 14 13 43 43 H 1.09005 * 109.47253 * 299.99934 * 18 17 16 44 44 H 1.08998 * 109.47615 * 60.00398 * 18 17 16 45 45 H 0.97001 * 120.00038 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 3.1300 -0.7209 1.2494 7 7 1.5504 -0.0288 2.4487 8 6 1.5377 -2.1421 1.2491 9 8 0.5769 -2.4456 1.9244 10 7 2.1561 -3.0754 0.4989 11 6 1.6217 -4.3677 0.4073 12 6 0.2679 -4.5770 0.6210 13 6 -0.2573 -5.8527 0.5307 14 6 0.5637 -6.9232 0.2263 15 6 1.9143 -6.7243 0.0111 16 6 2.4504 -5.4474 0.1007 17 16 4.1720 -5.1905 -0.1724 18 6 4.7829 -6.8615 -0.5257 19 6 6.2666 -6.8097 -0.7851 20 1 6.7897 -5.8658 -0.7413 21 6 6.9563 -7.9672 -1.0772 22 7 6.3193 -9.1166 -1.1300 23 14 8.7952 -7.9027 -1.3994 24 1 9.4890 -7.3643 -0.2019 25 1 9.2952 -9.2707 -1.6885 26 1 9.0630 -7.0218 -2.5645 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7207 -1.2495 36 1 0.5417 -0.0154 2.4720 37 1 1.9259 -0.4473 3.2864 38 1 2.9711 -2.8527 0.0223 39 1 -0.3764 -3.7435 0.8589 40 1 -1.3120 -6.0137 0.6979 41 1 0.1481 -7.9176 0.1566 42 1 2.5533 -7.5632 -0.2222 43 1 4.5863 -7.5086 0.3292 44 1 4.2737 -7.2563 -1.4048 45 1 6.8045 -9.9310 -1.3359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573458164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:21 Heat of formation + Delta-G solvation = -43.058696 kcal Electronic energy + Delta-G solvation = -25135.474082 eV Core-core repulsion = 21663.558106 eV Total energy + Delta-G solvation = -3471.915977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.04942 -39.87386 -38.08154 -36.04990 -35.34030 -33.51909 -32.18237 -30.97590 -30.60610 -28.23293 -28.07997 -26.80971 -25.44555 -24.13342 -23.46020 -21.69562 -20.09732 -19.24111 -18.41444 -18.26015 -17.94952 -17.33952 -16.83589 -16.44263 -16.08870 -15.76521 -15.65858 -15.27215 -14.85965 -14.81574 -14.69449 -14.48769 -14.32134 -14.23436 -13.90730 -13.59872 -13.17582 -13.02558 -12.98023 -12.75556 -12.74054 -12.57060 -12.52361 -11.99929 -11.85464 -11.70300 -11.66973 -11.60962 -11.53428 -11.08676 -11.01766 -10.86407 -10.55580 -9.85396 -9.33800 -8.37220 -8.22640 -6.52006 0.14516 0.29304 0.73718 1.40444 1.42872 1.45089 1.51508 1.73808 1.99704 2.34426 2.74158 2.98304 3.32580 3.53847 3.75389 3.84644 3.89599 4.08282 4.12003 4.33363 4.38324 4.46771 4.46959 4.47841 4.72723 4.82261 4.83296 4.84209 4.87782 4.90342 5.03877 5.08848 5.11494 5.16302 5.24575 5.29164 5.40345 5.40586 5.50047 5.52730 5.56443 5.79477 5.91430 5.97313 6.29636 6.35909 6.54932 6.92264 7.17120 8.74654 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.003456 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.064091 B = 8099.439130 C = 9475.640511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C -0.125 4.125 4 C -0.162 4.162 5 C 0.090 3.910 6 H 0.114 0.886 7 N -0.808 5.808 8 C 0.486 3.514 9 O -0.551 6.551 10 N -0.654 5.654 11 C 0.148 3.852 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.118 4.118 15 C -0.131 4.131 16 C -0.124 4.124 17 S -0.154 6.154 18 C 0.083 3.917 19 C -0.542 4.542 20 H 0.069 0.931 21 C 0.018 3.982 22 N -0.922 5.922 23 Si 0.977 3.023 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.264 1.264 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.350 0.650 37 H 0.348 0.652 38 H 0.417 0.583 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.112 0.888 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 17.349 1.989 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.220 4.220 5 C -0.027 4.027 6 H 0.132 0.868 7 N -0.337 5.337 8 C 0.274 3.726 9 O -0.429 6.429 10 N -0.299 5.299 11 C 0.047 3.953 12 C -0.146 4.146 13 C -0.128 4.128 14 C -0.138 4.138 15 C -0.156 4.156 16 C -0.239 4.239 17 S 0.091 5.909 18 C -0.065 4.065 19 C -0.581 4.581 20 H 0.087 0.913 21 C -0.183 4.183 22 N -0.560 5.560 23 Si 0.800 3.200 24 H -0.190 1.190 25 H -0.203 1.203 26 H -0.188 1.188 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.256 0.744 39 H 0.165 0.835 40 H 0.175 0.825 41 H 0.166 0.834 42 H 0.130 0.870 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.380 18.705 2.176 22.002 hybrid contribution 0.192 -2.883 -0.187 2.896 sum -11.188 15.821 1.989 19.479 Atomic orbital electron populations 1.21918 0.94232 1.01046 1.02995 1.20451 0.96041 0.96889 0.91495 1.21701 1.01128 0.92871 1.02548 1.22170 1.02117 1.00065 0.97630 1.21798 1.01741 0.84782 0.94333 0.86793 1.59196 1.15478 1.55645 1.03358 1.22895 0.83049 0.89537 0.77165 1.90625 1.28270 1.82027 1.41965 1.43956 1.28996 1.08611 1.48374 1.17442 0.92214 0.83687 1.01952 1.21385 0.92470 0.99250 1.01517 1.21374 1.01123 0.91319 0.98967 1.21308 0.92119 1.00652 0.99719 1.21226 0.97267 0.94945 1.02139 1.21828 0.97573 0.96050 1.08493 1.84572 0.99131 1.20196 1.86978 1.20987 0.99082 0.88295 0.98096 1.20924 0.91703 0.94958 1.50536 0.91296 1.25902 1.04180 0.94309 0.93938 1.70050 1.38679 0.99280 1.48041 0.85316 0.77671 0.77701 0.79328 1.19025 1.20309 1.18821 0.91488 0.91060 0.94654 0.92288 0.91852 0.91348 0.93701 0.90611 0.91231 0.83477 0.83930 0.74431 0.83542 0.82517 0.83428 0.86989 0.96297 0.95984 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.89 71.98 0.57 -1.82 16 2 C -0.05 -0.76 0.62 -52.18 -0.03 -0.80 16 3 C -0.13 -1.66 8.32 71.98 0.60 -1.06 16 4 C -0.16 -2.74 7.58 71.98 0.55 -2.20 16 5 C 0.09 1.65 2.51 44.17 0.11 1.77 16 6 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 7 N -0.81 -13.51 8.16 -171.80 -1.40 -14.91 16 8 C 0.49 12.25 5.21 87.66 0.46 12.71 16 9 O -0.55 -16.31 13.12 -3.07 -0.04 -16.35 16 10 N -0.65 -18.43 3.69 -303.01 -1.12 -19.55 16 11 C 0.15 4.97 6.44 38.22 0.25 5.22 16 12 C -0.12 -3.82 8.72 22.37 0.20 -3.62 16 13 C -0.11 -2.91 10.04 22.29 0.22 -2.68 16 14 C -0.12 -3.54 10.04 22.28 0.22 -3.32 16 15 C -0.13 -4.95 9.36 22.39 0.21 -4.74 16 16 C -0.12 -4.78 6.12 22.71 0.14 -4.64 16 17 S -0.15 -6.49 20.55 -56.49 -1.16 -7.65 16 18 C 0.08 4.30 4.09 71.24 0.29 4.60 16 19 C -0.54 -29.85 9.13 25.60 0.23 -29.62 16 20 H 0.07 3.69 7.71 -2.91 -0.02 3.66 16 21 C 0.02 1.00 5.46 84.65 0.46 1.46 16 22 N -0.92 -53.06 13.29 21.45 0.28 -52.77 16 23 Si 0.98 42.20 29.54 68.60 2.03 44.23 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 27 H 0.07 1.03 6.67 -2.39 -0.02 1.02 16 28 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.03 0.73 7.00 -2.38 -0.02 0.71 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.95 7.60 -2.39 -0.02 0.93 16 33 H 0.04 0.93 6.00 -2.38 -0.01 0.92 16 34 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.35 6.01 6.75 -89.69 -0.61 5.40 16 37 H 0.35 5.77 9.06 -89.70 -0.81 4.95 16 38 H 0.42 11.12 6.82 -92.70 -0.63 10.49 16 39 H 0.15 4.38 5.79 -2.91 -0.02 4.36 16 40 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 42 H 0.11 4.68 5.88 -2.91 -0.02 4.67 16 43 H 0.02 1.05 7.75 -2.39 -0.02 1.03 16 44 H 0.02 1.21 7.75 -2.39 -0.02 1.19 16 45 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -62.98 369.26 2.04 -60.95 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -1.02 Total: 34.81 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 4.47 Total: -28.75 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.24 Total: -87.24 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.04 Total: -16.35 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -1.16 Total: -7.65 kcal Total: -62.98 2.04 -60.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573458164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.887 kcal (2) G-P(sol) polarization free energy of solvation -62.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds