Wall clock time and date at job start Tue Mar 31 2020 13:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46926 * 60.00035 * 3 2 1 5 5 C 1.53004 * 109.46908 * 65.00135 * 4 3 2 6 6 C 1.52996 * 109.47465 * 300.00223 * 3 2 1 7 7 N 1.46899 * 109.47298 * 300.00179 * 6 3 2 8 8 N 1.46492 * 109.47018 * 180.02562 * 3 2 1 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 3 2 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 3 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 3 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31631 * 119.99738 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00147 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99772 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00042 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00031 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08998 * 109.46951 * 300.00147 * 1 2 3 27 27 H 1.09004 * 109.46862 * 59.99467 * 1 2 3 28 28 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46773 * 240.00794 * 2 1 3 30 30 H 1.08994 * 109.47379 * 120.00424 * 2 1 3 31 31 H 1.09000 * 109.47293 * 184.99578 * 4 3 2 32 32 H 1.08993 * 109.47654 * 305.00206 * 4 3 2 33 33 H 1.09005 * 109.47169 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47108 * 299.99477 * 5 4 3 35 35 H 1.09000 * 109.47552 * 59.99658 * 5 4 3 36 36 H 1.09010 * 109.47265 * 59.99788 * 6 3 2 37 37 H 1.08998 * 109.47545 * 179.97438 * 6 3 2 38 38 H 1.00894 * 111.00324 * 179.97438 * 7 6 3 39 39 H 1.00901 * 110.99944 * 303.95288 * 7 6 3 40 40 H 0.96996 * 120.00373 * 359.97438 * 8 3 2 41 41 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 42 42 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 43 43 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 44 44 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 2.1402 1.5187 2.4953 6 6 1.5300 2.1639 -1.2492 7 7 2.0196 1.4714 -2.4487 8 7 3.5050 1.4425 -0.0006 9 6 4.1789 2.6097 -0.0002 10 8 3.5712 3.6624 0.0002 11 6 5.6576 2.6097 -0.0003 12 6 6.3580 1.4013 -0.0002 13 6 7.7385 1.4028 0.0003 14 6 8.4331 2.5972 -0.0060 15 6 7.7453 3.8072 -0.0003 16 16 8.6360 5.3275 -0.0003 17 6 8.6738 5.6600 1.7296 18 1 8.2826 4.9347 2.4276 19 6 9.2061 6.8536 2.1950 20 7 9.2348 7.1017 3.4874 21 14 9.8822 8.1085 0.9878 22 1 8.7980 9.0382 0.5812 23 1 10.9769 8.8767 1.6334 24 1 10.4091 7.4082 -0.2110 25 6 6.3566 3.8155 -0.0003 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.8184 3.2140 1.2057 32 1 0.4438 2.0868 1.2953 33 1 1.7765 2.0322 3.3854 34 1 1.8518 0.4684 2.5390 35 1 3.2265 1.5955 2.4494 36 1 0.4399 2.1639 -1.2492 37 1 1.8930 3.1916 -1.2489 38 1 1.6958 1.9287 -3.2877 39 1 3.0261 1.4013 -2.4402 40 1 3.9900 0.6025 -0.0006 41 1 5.8194 0.4652 -0.0005 42 1 8.2774 0.4669 0.0008 43 1 9.5131 2.5920 -0.0105 44 1 9.6066 7.9364 3.8129 45 1 5.8202 4.7529 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577059700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:38 Heat of formation + Delta-G solvation = -22.585251 kcal Electronic energy + Delta-G solvation = -25195.794340 eV Core-core repulsion = 21724.766158 eV Total energy + Delta-G solvation = -3471.028182 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68153 -38.61889 -37.11412 -33.55484 -33.19056 -32.51448 -31.32236 -30.72374 -30.50486 -27.19687 -25.69713 -24.75729 -23.40124 -22.74283 -22.36783 -20.41092 -19.23167 -18.38538 -17.38295 -16.43906 -16.11497 -15.92513 -15.35804 -15.28691 -15.00371 -14.75588 -14.58818 -14.39263 -13.88014 -13.52645 -13.43969 -13.10924 -12.94921 -12.88720 -12.51034 -12.31033 -12.05679 -11.96869 -11.93900 -11.55483 -11.37477 -11.25658 -11.18016 -11.11390 -10.76387 -10.64952 -10.56285 -9.93928 -9.66998 -9.27133 -9.15662 -9.09516 -8.68123 -8.65803 -8.17997 -7.15492 -6.34519 -4.10175 1.08331 1.56783 2.83758 3.00591 3.10855 3.25625 3.36943 3.48716 4.04725 4.24597 4.27917 4.60240 4.68872 4.82354 4.86840 4.87876 5.02310 5.04708 5.10547 5.15260 5.23460 5.28182 5.42967 5.48862 5.50226 5.64337 5.65959 5.73266 5.75739 5.80636 5.89735 5.95581 6.03410 6.07854 6.13335 6.16066 6.33514 6.48538 6.53226 6.55808 6.80736 6.92701 7.08712 7.23167 7.52654 7.89651 8.28664 8.42915 9.09290 10.74945 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.003104 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.431844 B = 9017.753391 C = 9347.438003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.185 3.815 4 C -0.140 4.140 5 C -0.147 4.147 6 C 0.044 3.956 7 N -0.846 5.846 8 N -0.721 5.721 9 C 0.564 3.436 10 O -0.530 6.530 11 C -0.154 4.154 12 C -0.086 4.086 13 C -0.139 4.139 14 C -0.052 4.052 15 C -0.085 4.085 16 S -0.113 6.113 17 C -0.509 4.509 18 H 0.091 0.909 19 C 0.095 3.905 20 N -0.876 5.876 21 Si 0.858 3.142 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.017 4.017 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.339 0.661 39 H 0.339 0.661 40 H 0.398 0.602 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.272 0.728 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 -16.216 -8.542 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.099 3.901 4 C -0.179 4.179 5 C -0.204 4.204 6 C -0.087 4.087 7 N -0.374 5.374 8 N -0.374 5.374 9 C 0.353 3.647 10 O -0.408 6.408 11 C -0.159 4.159 12 C -0.105 4.105 13 C -0.159 4.159 14 C -0.073 4.073 15 C -0.195 4.195 16 S 0.121 5.879 17 C -0.656 4.656 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.512 5.512 21 Si 0.682 3.318 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.039 4.039 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.234 0.766 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.082 0.918 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.093 -15.279 -8.976 22.641 hybrid contribution 0.570 0.415 0.652 0.960 sum -13.523 -14.864 -8.325 21.751 Atomic orbital electron populations 1.21802 0.94907 1.01690 1.02158 1.21645 0.96846 0.94572 1.02522 1.20387 0.79048 0.96147 0.94539 1.21986 1.00324 1.01987 0.93566 1.21718 1.01361 1.00133 0.97231 1.22248 0.99988 0.96971 0.89515 1.58770 1.16529 1.57929 1.04217 1.46030 1.06628 1.08481 1.76264 1.18355 0.87220 0.83596 0.75540 1.90720 1.69581 1.31312 1.49138 1.19885 0.92263 0.94615 1.09140 1.21181 0.94643 0.96230 0.98443 1.21050 0.93866 0.98123 1.02850 1.21898 1.00553 0.91293 0.93567 1.22191 0.95490 0.99368 1.02494 1.83069 1.69079 1.21440 1.14325 1.22235 1.47675 1.07953 0.87705 0.89116 1.24746 0.94396 0.97066 0.95182 1.69927 1.43539 1.25259 1.12449 0.86733 0.79992 0.82617 0.82416 1.19042 1.19778 1.16339 1.21881 0.93228 0.97516 0.91271 0.92530 0.91995 0.92723 0.90269 0.91813 0.89694 0.91082 0.92837 0.92885 0.92648 0.90419 0.92821 0.84961 0.84915 0.76647 0.86330 0.85653 0.84954 0.91794 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.22 37.16 0.34 -0.72 16 2 C -0.12 -0.93 4.70 -26.73 -0.13 -1.05 16 3 C 0.18 1.82 0.29 -131.82 -0.04 1.78 16 4 C -0.14 -1.54 4.46 -26.73 -0.12 -1.66 16 5 C -0.15 -1.57 9.46 37.16 0.35 -1.22 16 6 C 0.04 0.46 5.18 -3.83 -0.02 0.44 16 7 N -0.85 -7.69 8.86 -10.37 -0.09 -7.78 16 8 N -0.72 -7.65 3.38 -48.54 -0.16 -7.81 16 9 C 0.56 8.32 6.98 -12.32 -0.09 8.23 16 10 O -0.53 -9.51 12.60 5.32 0.07 -9.44 16 11 C -0.15 -2.44 5.87 -105.00 -0.62 -3.06 16 12 C -0.09 -1.10 9.54 -39.12 -0.37 -1.48 16 13 C -0.14 -1.89 10.02 -39.67 -0.40 -2.29 16 14 C -0.05 -0.89 9.79 -39.25 -0.38 -1.28 16 15 C -0.08 -1.74 5.45 -39.00 -0.21 -1.95 16 16 S -0.11 -2.73 19.38 -107.50 -2.08 -4.81 16 17 C -0.51 -14.57 10.01 30.92 0.31 -14.26 16 18 H 0.09 2.83 8.02 -52.49 -0.42 2.41 16 19 C 0.10 2.74 5.50 -17.45 -0.10 2.64 16 20 N -0.88 -26.29 13.97 55.49 0.78 -25.52 16 21 Si 0.86 21.00 27.74 -169.99 -4.71 16.29 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 25 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 26 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 27 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.64 7.60 -51.93 -0.39 0.25 16 30 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 31 H 0.08 1.21 6.32 -51.93 -0.33 0.88 16 32 H 0.07 0.67 6.17 -51.93 -0.32 0.35 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 35 H 0.05 0.68 7.29 -51.93 -0.38 0.30 16 36 H 0.08 0.74 6.43 -51.92 -0.33 0.40 16 37 H 0.05 0.72 6.16 -51.93 -0.32 0.40 16 38 H 0.34 2.75 9.08 -39.29 -0.36 2.39 16 39 H 0.34 3.27 8.30 -39.29 -0.33 2.94 16 40 H 0.40 3.38 6.50 -40.82 -0.27 3.11 16 41 H 0.12 1.06 6.40 -52.49 -0.34 0.72 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.14 2.94 7.65 -52.49 -0.40 2.54 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -31.59 365.19 -8.91 -40.50 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.37 Total: 9.65 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -1.83 Total: -16.58 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.52 Total: -41.12 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.29 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.08 Total: -4.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.59 -8.91 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577059700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.917 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds