Wall clock time and date at job start Tue Mar 31 2020 13:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46926 * 60.00035 * 3 2 1 5 5 C 1.53004 * 109.46908 * 65.00135 * 4 3 2 6 6 C 1.52996 * 109.47465 * 300.00223 * 3 2 1 7 7 N 1.46899 * 109.47298 * 300.00179 * 6 3 2 8 8 N 1.46492 * 109.47018 * 180.02562 * 3 2 1 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 3 2 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 3 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 3 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31631 * 119.99738 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00147 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99772 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00042 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00031 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08998 * 109.46951 * 300.00147 * 1 2 3 27 27 H 1.09004 * 109.46862 * 59.99467 * 1 2 3 28 28 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46773 * 240.00794 * 2 1 3 30 30 H 1.08994 * 109.47379 * 120.00424 * 2 1 3 31 31 H 1.09000 * 109.47293 * 184.99578 * 4 3 2 32 32 H 1.08993 * 109.47654 * 305.00206 * 4 3 2 33 33 H 1.09005 * 109.47169 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47108 * 299.99477 * 5 4 3 35 35 H 1.09000 * 109.47552 * 59.99658 * 5 4 3 36 36 H 1.09010 * 109.47265 * 59.99788 * 6 3 2 37 37 H 1.08998 * 109.47545 * 179.97438 * 6 3 2 38 38 H 1.00894 * 111.00324 * 179.97438 * 7 6 3 39 39 H 1.00901 * 110.99944 * 303.95288 * 7 6 3 40 40 H 0.96996 * 120.00373 * 359.97438 * 8 3 2 41 41 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 42 42 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 43 43 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 44 44 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 2.1402 1.5187 2.4953 6 6 1.5300 2.1639 -1.2492 7 7 2.0196 1.4714 -2.4487 8 7 3.5050 1.4425 -0.0006 9 6 4.1789 2.6097 -0.0002 10 8 3.5712 3.6624 0.0002 11 6 5.6576 2.6097 -0.0003 12 6 6.3580 1.4013 -0.0002 13 6 7.7385 1.4028 0.0003 14 6 8.4331 2.5972 -0.0060 15 6 7.7453 3.8072 -0.0003 16 16 8.6360 5.3275 -0.0003 17 6 8.6738 5.6600 1.7296 18 1 8.2826 4.9347 2.4276 19 6 9.2061 6.8536 2.1950 20 7 9.2348 7.1017 3.4874 21 14 9.8822 8.1085 0.9878 22 1 8.7980 9.0382 0.5812 23 1 10.9769 8.8767 1.6334 24 1 10.4091 7.4082 -0.2110 25 6 6.3566 3.8155 -0.0003 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.8184 3.2140 1.2057 32 1 0.4438 2.0868 1.2953 33 1 1.7765 2.0322 3.3854 34 1 1.8518 0.4684 2.5390 35 1 3.2265 1.5955 2.4494 36 1 0.4399 2.1639 -1.2492 37 1 1.8930 3.1916 -1.2489 38 1 1.6958 1.9287 -3.2877 39 1 3.0261 1.4013 -2.4402 40 1 3.9900 0.6025 -0.0006 41 1 5.8194 0.4652 -0.0005 42 1 8.2774 0.4669 0.0008 43 1 9.5131 2.5920 -0.0105 44 1 9.6066 7.9364 3.8129 45 1 5.8202 4.7529 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577059700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:38 Heat of formation + Delta-G solvation = -44.424269 kcal Electronic energy + Delta-G solvation = -25196.741351 eV Core-core repulsion = 21724.766158 eV Total energy + Delta-G solvation = -3471.975192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74953 -39.78643 -38.23084 -34.73909 -34.47520 -34.13506 -32.19644 -31.94445 -31.67961 -28.04207 -27.93741 -25.66205 -24.47039 -23.68638 -23.58245 -21.57235 -20.17896 -20.02889 -18.96919 -17.34602 -17.19603 -17.14038 -17.00506 -16.65040 -16.17900 -15.82865 -15.69008 -15.45212 -15.12168 -14.98665 -14.71816 -14.47972 -13.93322 -13.85685 -13.67440 -13.57725 -13.15762 -13.10998 -13.09231 -12.84976 -12.69644 -12.62644 -12.35534 -12.28476 -12.09343 -11.87292 -11.49787 -11.36315 -11.24468 -11.03629 -10.74866 -10.22469 -9.92317 -9.75643 -9.52125 -9.16452 -8.56062 -6.30209 -0.20329 0.20128 1.04746 1.29162 1.41837 1.64550 1.79491 2.08873 2.19601 2.59225 2.82098 2.96015 3.47074 3.64140 3.89716 3.91209 3.94874 3.99873 4.10320 4.29914 4.31516 4.43286 4.51835 4.57606 4.60217 4.64889 4.70478 4.78396 4.88220 4.89449 4.93801 5.08954 5.18488 5.22454 5.27812 5.29065 5.30380 5.42794 5.43631 5.52570 5.64839 5.66578 5.82810 6.07722 6.12773 6.48258 6.57138 6.86357 7.20860 8.57679 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.003104 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.431844 B = 9017.753391 C = 9347.438003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.185 3.815 4 C -0.140 4.140 5 C -0.144 4.144 6 C 0.048 3.952 7 N -0.835 5.835 8 N -0.698 5.698 9 C 0.564 3.436 10 O -0.570 6.570 11 C -0.157 4.157 12 C -0.060 4.060 13 C -0.121 4.121 14 C -0.061 4.061 15 C -0.119 4.119 16 S -0.117 6.117 17 C -0.523 4.523 18 H 0.044 0.956 19 C 0.040 3.960 20 N -0.920 5.920 21 Si 0.922 3.078 22 H -0.263 1.263 23 H -0.257 1.257 24 H -0.226 1.226 25 C -0.044 4.044 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.088 0.912 37 H 0.017 0.983 38 H 0.345 0.655 39 H 0.337 0.663 40 H 0.413 0.587 41 H 0.174 0.826 42 H 0.176 0.824 43 H 0.139 0.861 44 H 0.278 0.722 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.286 -20.013 -10.033 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C 0.100 3.900 4 C -0.178 4.178 5 C -0.201 4.201 6 C -0.083 4.083 7 N -0.364 5.364 8 N -0.350 5.350 9 C 0.352 3.648 10 O -0.450 6.450 11 C -0.162 4.162 12 C -0.078 4.078 13 C -0.141 4.141 14 C -0.082 4.082 15 C -0.230 4.230 16 S 0.117 5.883 17 C -0.670 4.670 18 H 0.063 0.937 19 C -0.165 4.165 20 N -0.557 5.557 21 Si 0.743 3.257 22 H -0.188 1.188 23 H -0.181 1.181 24 H -0.149 1.149 25 C -0.066 4.066 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.035 0.965 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.252 0.748 41 H 0.191 0.809 42 H 0.194 0.806 43 H 0.156 0.844 44 H 0.088 0.912 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.647 -19.131 -10.478 26.274 hybrid contribution 0.577 1.386 1.133 1.881 sum -14.071 -17.744 -9.345 24.498 Atomic orbital electron populations 1.21804 0.94233 1.02526 1.01970 1.21610 0.97304 0.92348 1.03387 1.20497 0.78176 0.97717 0.93656 1.21959 1.01529 0.99850 0.94492 1.21699 0.99985 1.01663 0.96766 1.22160 1.00553 0.95175 0.90449 1.58799 1.16313 1.57296 1.03995 1.45844 1.07125 1.07705 1.74354 1.18287 0.86853 0.84162 0.75502 1.90726 1.70123 1.33117 1.51015 1.20038 0.93068 0.94478 1.08662 1.21755 0.94713 0.96826 0.94533 1.21562 0.94194 0.98400 0.99908 1.22073 1.01161 0.91370 0.93555 1.22060 0.95692 0.98530 1.06683 1.82607 1.70346 1.25038 1.10307 1.22365 1.47146 1.07245 0.90271 0.93719 1.25738 0.94553 0.99098 0.97074 1.70033 1.44836 1.26318 1.14540 0.85767 0.79692 0.79833 0.80433 1.18772 1.18076 1.14948 1.21613 0.93103 0.97998 0.93839 0.92462 0.92514 0.91377 0.89727 0.90520 0.93624 0.89334 0.93311 0.90217 0.94514 0.89381 0.96514 0.84292 0.85117 0.74839 0.80896 0.80634 0.84363 0.91245 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.22 71.98 0.66 -0.96 16 2 C -0.11 -1.30 4.70 30.60 0.14 -1.15 16 3 C 0.19 3.31 0.29 3.60 0.00 3.31 16 4 C -0.14 -2.98 4.46 30.60 0.14 -2.84 16 5 C -0.14 -2.86 9.46 71.98 0.68 -2.18 16 6 C 0.05 0.97 5.18 86.30 0.45 1.41 16 7 N -0.84 -13.63 8.86 -186.72 -1.65 -15.28 16 8 N -0.70 -13.28 3.38 -425.74 -1.44 -14.72 16 9 C 0.56 16.55 6.98 86.79 0.61 17.16 16 10 O -0.57 -21.66 12.60 -3.88 -0.05 -21.71 16 11 C -0.16 -4.89 5.87 -20.11 -0.12 -5.01 16 12 C -0.06 -1.30 9.54 22.57 0.22 -1.08 16 13 C -0.12 -2.79 10.02 22.21 0.22 -2.57 16 14 C -0.06 -2.02 9.79 22.48 0.22 -1.80 16 15 C -0.12 -5.03 5.45 22.65 0.12 -4.91 16 16 S -0.12 -5.86 19.38 -56.49 -1.09 -6.96 16 17 C -0.52 -31.71 10.01 67.94 0.68 -31.03 16 18 H 0.04 3.00 8.02 -2.91 -0.02 2.98 16 19 C 0.04 2.42 5.50 84.84 0.47 2.88 16 20 N -0.92 -57.57 13.97 21.64 0.30 -57.27 16 21 Si 0.92 44.43 27.74 68.60 1.90 46.33 16 22 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.23 -10.33 6.74 99.48 0.67 -9.66 16 25 C -0.04 -1.80 9.34 22.70 0.21 -1.58 16 26 H 0.06 0.63 6.32 -2.39 -0.02 0.61 16 27 H 0.06 0.69 6.43 -2.38 -0.02 0.68 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.99 7.60 -2.39 -0.02 0.97 16 30 H 0.08 0.77 6.56 -2.39 -0.02 0.75 16 31 H 0.04 1.36 6.32 -2.39 -0.02 1.34 16 32 H 0.09 1.55 6.17 -2.39 -0.01 1.53 16 33 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 1.15 6.57 -2.39 -0.02 1.13 16 35 H 0.04 0.86 7.29 -2.39 -0.02 0.84 16 36 H 0.09 1.57 6.43 -2.38 -0.02 1.55 16 37 H 0.02 0.47 6.16 -2.39 -0.01 0.45 16 38 H 0.34 5.09 9.08 -89.70 -0.81 4.28 16 39 H 0.34 5.76 8.30 -89.69 -0.74 5.01 16 40 H 0.41 5.18 6.50 -92.71 -0.60 4.58 16 41 H 0.17 1.90 6.40 -2.91 -0.02 1.88 16 42 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 44 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 45 H 0.10 4.87 7.65 -2.91 -0.02 4.85 16 Total: -1.00 -76.85 365.19 1.51 -75.33 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -1.16 Total: 24.65 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 4.70 Total: -30.36 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.79 Total: -87.28 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.33 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.09 Total: -6.96 kcal Total: -76.85 1.51 -75.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577059700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.908 kcal (2) G-P(sol) polarization free energy of solvation -76.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds