Wall clock time and date at job start Tue Mar 31 2020 13:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46560 * 2 1 4 4 C 1.50702 * 109.46713 * 180.02562 * 3 2 1 5 5 C 1.37474 * 122.44336 * 265.24076 * 4 3 2 6 6 C 1.36654 * 113.28898 * 180.23062 * 5 4 3 7 7 C 1.46582 * 125.45700 * 179.84208 * 6 5 4 8 8 O 1.21705 * 119.99595 * 359.71684 * 7 6 5 9 9 N 1.34774 * 120.00447 * 179.71522 * 7 6 5 10 10 C 1.46502 * 120.00215 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46804 * 180.02562 * 10 9 7 12 12 C 1.30994 * 119.99826 * 125.27541 * 11 10 9 13 13 C 1.50702 * 120.00204 * 179.71900 * 12 11 10 14 14 N 1.46500 * 109.46883 * 124.99760 * 13 12 11 15 15 C 1.36943 * 119.99537 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00004 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00422 * 180.02562 * 17 15 14 19 19 Si 1.86810 * 119.99902 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47261 * 89.99809 * 19 17 15 21 21 H 1.48494 * 109.47034 * 210.00404 * 19 17 15 22 22 H 1.48509 * 109.46803 * 330.00181 * 19 17 15 23 23 S 1.75825 * 109.08663 * 359.57275 * 6 5 4 24 24 C 1.33815 * 122.44991 * 85.00374 * 4 3 2 25 25 C 1.50700 * 124.52376 * 359.97438 * 24 4 3 26 26 H 1.08996 * 109.47233 * 299.99756 * 1 2 3 27 27 H 1.08994 * 109.47229 * 60.00613 * 1 2 3 28 28 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47233 * 240.00244 * 2 1 3 30 30 H 1.08994 * 109.47229 * 119.99387 * 2 1 3 31 31 H 1.08996 * 109.47148 * 60.00192 * 3 2 1 32 32 H 1.09004 * 109.46871 * 299.99638 * 3 2 1 33 33 H 1.07993 * 123.35555 * 0.04838 * 5 4 3 34 34 H 0.96997 * 119.99865 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47066 * 59.99906 * 10 9 7 36 36 H 1.09001 * 109.47002 * 300.00046 * 10 9 7 37 37 H 1.08002 * 119.99761 * 304.99301 * 11 10 9 38 38 H 1.08002 * 120.00350 * 359.72370 * 12 11 10 39 39 H 1.08998 * 109.47600 * 245.00508 * 13 12 11 40 40 H 1.09004 * 109.46937 * 5.00335 * 13 12 11 41 41 H 0.96999 * 120.00357 * 0.02562 * 14 13 12 42 42 H 0.96992 * 120.00213 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.47248 * 180.02562 * 25 24 4 44 44 H 1.09007 * 109.46841 * 300.00185 * 25 24 4 45 45 H 1.08994 * 109.47026 * 59.99925 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2849 1.5388 1.1552 6 6 5.6339 1.5258 0.9376 7 6 6.6638 1.6168 1.9767 8 8 6.3412 1.7186 3.1458 9 7 7.9678 1.5877 1.6375 10 6 8.9971 1.6792 2.6761 11 6 10.3611 1.6245 2.0376 12 6 11.2317 2.5752 2.2703 13 6 12.5979 2.5174 1.6369 14 7 12.8443 3.7555 0.8935 15 6 14.0291 3.9312 0.2297 16 1 14.7817 3.1569 0.2539 17 6 14.2628 5.1045 -0.4743 18 7 15.4014 5.2733 -1.1128 19 14 12.9608 6.4434 -0.5168 20 1 13.1723 7.3758 0.6194 21 1 13.0611 7.1909 -1.7960 22 1 11.6138 5.8276 -0.4077 23 16 5.9365 1.3748 -0.7878 24 6 4.2644 1.3445 -1.1259 25 6 3.6744 1.2233 -2.5073 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8901 33 1 3.8426 1.6196 2.1371 34 1 8.2249 1.5062 0.7058 35 1 8.8871 0.8466 3.3709 36 1 8.8863 2.6198 3.2156 37 1 10.6223 0.7992 1.3919 38 1 10.9705 3.4005 2.9161 39 1 13.3541 2.4033 2.4136 40 1 12.6466 1.6683 0.9550 41 1 12.1682 4.4507 0.8714 42 1 15.5645 6.0929 -1.6050 43 1 4.4777 1.1590 -3.2411 44 1 3.0597 0.3248 -2.5622 45 1 3.0590 2.0980 -2.7174 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699340766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:15 Heat of formation + Delta-G solvation = 3.087845 kcal Electronic energy + Delta-G solvation = -23144.293185 eV Core-core repulsion = 19674.378272 eV Total energy + Delta-G solvation = -3469.914913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00399 -38.91642 -36.45078 -34.90234 -34.58249 -32.97850 -32.32931 -30.98906 -29.08108 -27.77077 -26.04436 -24.42350 -23.36881 -22.18342 -21.60755 -20.83305 -19.81730 -18.94152 -18.16906 -17.59931 -16.82159 -15.91416 -15.54919 -15.21395 -15.12444 -14.67377 -14.59762 -14.28371 -13.92992 -13.83429 -13.74364 -13.43217 -13.23930 -13.12582 -12.80667 -12.51815 -12.36109 -12.22868 -12.19497 -12.09086 -11.75664 -11.53863 -11.37744 -11.13594 -10.97986 -10.89969 -10.71603 -10.32902 -10.17191 -9.64056 -9.46372 -9.14369 -8.93307 -8.81793 -8.70258 -7.27872 -5.80263 -3.16689 0.21033 1.14804 1.55589 2.02367 2.10848 3.01000 3.17430 3.35772 3.39072 3.43672 4.35012 4.42313 4.56374 4.56805 4.64528 4.71838 4.77990 4.83425 5.00982 5.09584 5.11763 5.16578 5.21019 5.37070 5.41626 5.46215 5.47554 5.49646 5.55267 5.60456 5.65278 5.67202 5.73475 5.85475 5.88269 6.01364 6.12633 6.14833 6.33085 6.45535 6.75319 6.98222 7.26932 7.94951 7.95928 8.38379 9.16877 9.89039 10.08623 11.37835 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.002210 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.314858 B =12667.624466 C =13629.212267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.058 4.058 4 C -0.123 4.123 5 C -0.045 4.045 6 C -0.269 4.269 7 C 0.590 3.410 8 O -0.534 6.534 9 N -0.721 5.721 10 C 0.155 3.845 11 C -0.198 4.198 12 C -0.113 4.113 13 C 0.177 3.823 14 N -0.753 5.753 15 C -0.248 4.248 16 H 0.091 0.909 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.885 3.115 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.277 1.277 23 S 0.204 5.796 24 C -0.194 4.194 25 C -0.084 4.084 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.400 0.600 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.373 -11.871 0.285 32.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.098 4.098 4 C -0.135 4.135 5 C -0.078 4.078 6 C -0.389 4.389 7 C 0.376 3.624 8 O -0.412 6.412 9 N -0.372 5.372 10 C 0.033 3.967 11 C -0.218 4.218 12 C -0.133 4.133 13 C 0.051 3.949 14 N -0.399 5.399 15 C -0.377 4.377 16 H 0.109 0.891 17 C -0.190 4.190 18 N -0.580 5.580 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.203 1.203 23 S 0.474 5.526 24 C -0.313 4.313 25 C -0.142 4.142 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.169 0.831 34 H 0.235 0.765 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -28.978 -11.921 0.136 31.335 hybrid contribution -1.901 1.106 0.307 2.220 sum -30.879 -10.815 0.442 32.721 Atomic orbital electron populations 1.21785 0.95597 1.01753 1.01885 1.21498 0.95637 0.96141 1.02436 1.20327 0.89007 0.97441 1.02991 1.18625 0.97490 1.06144 0.91287 1.20593 0.90872 0.96541 0.99792 1.24491 0.97978 1.19261 0.97207 1.16950 0.81639 0.76475 0.87314 1.90826 1.81744 1.50207 1.18458 1.45933 1.05222 1.74788 1.11234 1.20376 0.84245 1.02529 0.89550 1.22738 0.94216 1.01094 1.03706 1.23374 0.96459 0.96690 0.96750 1.19796 0.90882 0.90353 0.93911 1.42644 1.18719 1.16816 1.61679 1.19066 0.92600 1.02398 1.23673 0.89111 1.24674 0.96865 0.97840 0.99655 1.69697 1.23633 1.27255 1.37438 0.86542 0.81869 0.82760 0.77334 1.20994 1.21642 1.20291 1.83147 1.03254 1.67552 0.98643 1.24055 0.98379 1.08478 1.00432 1.20389 1.00939 1.03171 0.89750 0.92612 0.92714 0.92663 0.91930 0.91765 0.90840 0.90907 0.83110 0.76504 0.90591 0.90918 0.86419 0.87218 0.94203 0.94826 0.80513 0.92985 0.91203 0.90245 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 3 C -0.06 -0.37 5.11 -27.88 -0.14 -0.51 16 4 C -0.12 -1.05 5.04 -106.45 -0.54 -1.58 16 5 C -0.04 -0.46 9.78 -40.43 -0.40 -0.86 16 6 C -0.27 -3.06 6.45 -36.79 -0.24 -3.30 16 7 C 0.59 7.97 7.78 -12.90 -0.10 7.87 16 8 O -0.53 -8.83 16.84 5.18 0.09 -8.74 16 9 N -0.72 -8.70 5.54 -62.83 -0.35 -9.05 16 10 C 0.16 1.90 6.11 -5.19 -0.03 1.87 16 11 C -0.20 -2.53 9.24 -36.02 -0.33 -2.87 16 12 C -0.11 -1.70 9.24 -36.02 -0.33 -2.04 16 13 C 0.18 3.35 6.70 -5.19 -0.03 3.32 16 14 N -0.75 -17.91 5.40 -61.08 -0.33 -18.24 16 15 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 16 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 18 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 19 Si 0.88 22.11 27.74 -169.99 -4.71 17.40 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 23 S 0.20 1.85 22.08 -107.50 -2.37 -0.53 16 24 C -0.19 -1.58 6.28 -35.86 -0.23 -1.80 16 25 C -0.08 -0.47 9.44 36.01 0.34 -0.13 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.35 7.40 -51.93 -0.38 -0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.07 0.40 7.45 -51.93 -0.39 0.01 16 33 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.40 4.25 7.58 -40.82 -0.31 3.94 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 37 H 0.12 1.41 7.84 -52.49 -0.41 1.00 16 38 H 0.11 1.58 7.84 -52.49 -0.41 1.17 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.63 7.79 -51.93 -0.40 0.23 16 41 H 0.36 8.43 5.52 -40.82 -0.23 8.20 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 43 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 44 H 0.08 0.36 7.41 -51.93 -0.38 -0.02 16 45 H 0.08 0.38 7.92 -51.93 -0.41 -0.03 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -33.52 389.31 -10.24 -43.76 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.13 Total: 6.34 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.07 Total: -8.33 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.10 Total: -55.76 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.37 Total: -0.53 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.52 -10.24 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699340766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.844 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds