Wall clock time and date at job start Tue Mar 31 2020 13:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46560 * 2 1 4 4 C 1.50702 * 109.46713 * 180.02562 * 3 2 1 5 5 C 1.37474 * 122.44336 * 265.24076 * 4 3 2 6 6 C 1.36654 * 113.28898 * 180.23062 * 5 4 3 7 7 C 1.46582 * 125.45700 * 179.84208 * 6 5 4 8 8 O 1.21705 * 119.99595 * 359.71684 * 7 6 5 9 9 N 1.34774 * 120.00447 * 179.71522 * 7 6 5 10 10 C 1.46502 * 120.00215 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46804 * 180.02562 * 10 9 7 12 12 C 1.30994 * 119.99826 * 125.27541 * 11 10 9 13 13 C 1.50702 * 120.00204 * 179.71900 * 12 11 10 14 14 N 1.46500 * 109.46883 * 124.99760 * 13 12 11 15 15 C 1.36943 * 119.99537 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00004 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00422 * 180.02562 * 17 15 14 19 19 Si 1.86810 * 119.99902 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47261 * 89.99809 * 19 17 15 21 21 H 1.48494 * 109.47034 * 210.00404 * 19 17 15 22 22 H 1.48509 * 109.46803 * 330.00181 * 19 17 15 23 23 S 1.75825 * 109.08663 * 359.57275 * 6 5 4 24 24 C 1.33815 * 122.44991 * 85.00374 * 4 3 2 25 25 C 1.50700 * 124.52376 * 359.97438 * 24 4 3 26 26 H 1.08996 * 109.47233 * 299.99756 * 1 2 3 27 27 H 1.08994 * 109.47229 * 60.00613 * 1 2 3 28 28 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47233 * 240.00244 * 2 1 3 30 30 H 1.08994 * 109.47229 * 119.99387 * 2 1 3 31 31 H 1.08996 * 109.47148 * 60.00192 * 3 2 1 32 32 H 1.09004 * 109.46871 * 299.99638 * 3 2 1 33 33 H 1.07993 * 123.35555 * 0.04838 * 5 4 3 34 34 H 0.96997 * 119.99865 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47066 * 59.99906 * 10 9 7 36 36 H 1.09001 * 109.47002 * 300.00046 * 10 9 7 37 37 H 1.08002 * 119.99761 * 304.99301 * 11 10 9 38 38 H 1.08002 * 120.00350 * 359.72370 * 12 11 10 39 39 H 1.08998 * 109.47600 * 245.00508 * 13 12 11 40 40 H 1.09004 * 109.46937 * 5.00335 * 13 12 11 41 41 H 0.96999 * 120.00357 * 0.02562 * 14 13 12 42 42 H 0.96992 * 120.00213 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.47248 * 180.02562 * 25 24 4 44 44 H 1.09007 * 109.46841 * 300.00185 * 25 24 4 45 45 H 1.08994 * 109.47026 * 59.99925 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2849 1.5388 1.1552 6 6 5.6339 1.5258 0.9376 7 6 6.6638 1.6168 1.9767 8 8 6.3412 1.7186 3.1458 9 7 7.9678 1.5877 1.6375 10 6 8.9971 1.6792 2.6761 11 6 10.3611 1.6245 2.0376 12 6 11.2317 2.5752 2.2703 13 6 12.5979 2.5174 1.6369 14 7 12.8443 3.7555 0.8935 15 6 14.0291 3.9312 0.2297 16 1 14.7817 3.1569 0.2539 17 6 14.2628 5.1045 -0.4743 18 7 15.4014 5.2733 -1.1128 19 14 12.9608 6.4434 -0.5168 20 1 13.1723 7.3758 0.6194 21 1 13.0611 7.1909 -1.7960 22 1 11.6138 5.8276 -0.4077 23 16 5.9365 1.3748 -0.7878 24 6 4.2644 1.3445 -1.1259 25 6 3.6744 1.2233 -2.5073 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8901 33 1 3.8426 1.6196 2.1371 34 1 8.2249 1.5062 0.7058 35 1 8.8871 0.8466 3.3709 36 1 8.8863 2.6198 3.2156 37 1 10.6223 0.7992 1.3919 38 1 10.9705 3.4005 2.9161 39 1 13.3541 2.4033 2.4136 40 1 12.6466 1.6683 0.9550 41 1 12.1682 4.4507 0.8714 42 1 15.5645 6.0929 -1.6050 43 1 4.4777 1.1590 -3.2411 44 1 3.0597 0.3248 -2.5622 45 1 3.0590 2.0980 -2.7174 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699340766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:14 Heat of formation + Delta-G solvation = -17.480242 kcal Electronic energy + Delta-G solvation = -23145.185084 eV Core-core repulsion = 19674.378272 eV Total energy + Delta-G solvation = -3470.806812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95702 -39.64465 -37.80587 -36.36258 -35.11518 -34.50151 -33.14681 -32.70058 -29.83751 -28.88731 -26.93173 -25.65024 -24.33980 -23.39001 -22.65451 -21.75041 -20.96716 -19.78962 -19.53549 -18.94487 -17.63423 -16.86660 -16.64608 -16.59083 -16.13528 -15.69139 -15.68105 -15.26766 -15.04662 -14.94889 -14.68851 -14.36614 -14.35577 -13.91019 -13.89483 -13.66507 -13.56221 -13.06846 -12.96685 -12.85451 -12.79016 -12.72441 -12.36651 -12.21051 -11.99492 -11.98679 -11.80067 -11.70287 -11.46435 -11.38100 -11.08370 -10.52179 -10.12464 -9.65024 -9.38219 -9.31324 -8.04580 -5.39054 -0.55660 0.42854 0.84790 0.97603 1.27680 1.37852 1.40851 1.48417 2.07074 2.20229 2.47055 3.26974 3.57947 3.70572 3.80019 3.88923 4.02691 4.07027 4.08638 4.26031 4.29437 4.41134 4.51930 4.60408 4.61751 4.63936 4.69933 4.73791 4.87827 4.90321 4.94735 4.97319 5.02378 5.07823 5.16356 5.17378 5.21788 5.41556 5.48770 5.53780 5.59781 5.69051 5.80513 6.19114 6.30751 6.97138 7.05364 7.80422 8.00166 9.16593 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.002210 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.314858 B =12667.624466 C =13629.212267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.055 4.055 4 C -0.133 4.133 5 C -0.045 4.045 6 C -0.302 4.302 7 C 0.589 3.411 8 O -0.573 6.573 9 N -0.715 5.715 10 C 0.157 3.843 11 C -0.162 4.162 12 C -0.131 4.131 13 C 0.175 3.825 14 N -0.756 5.756 15 C -0.240 4.240 16 H 0.059 0.941 17 C -0.062 4.062 18 N -0.982 5.982 19 Si 0.956 3.044 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.251 1.251 23 S 0.221 5.779 24 C -0.185 4.185 25 C -0.087 4.087 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.408 0.592 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.367 0.633 42 H 0.259 0.741 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.322 -12.055 -0.586 35.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.095 4.095 4 C -0.145 4.145 5 C -0.080 4.080 6 C -0.422 4.422 7 C 0.377 3.623 8 O -0.455 6.455 9 N -0.366 5.366 10 C 0.034 3.966 11 C -0.182 4.182 12 C -0.151 4.151 13 C 0.050 3.950 14 N -0.402 5.402 15 C -0.371 4.371 16 H 0.077 0.923 17 C -0.254 4.254 18 N -0.632 5.632 19 Si 0.783 3.217 20 H -0.205 1.205 21 H -0.220 1.220 22 H -0.176 1.176 23 S 0.491 5.509 24 C -0.305 4.305 25 C -0.145 4.145 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.163 0.837 34 H 0.244 0.756 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.148 0.852 38 H 0.136 0.864 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.200 0.800 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -31.947 -12.144 -0.724 34.185 hybrid contribution -0.999 1.009 0.560 1.526 sum -32.947 -11.136 -0.165 34.778 Atomic orbital electron populations 1.21769 0.94747 1.02050 1.02271 1.21466 0.96329 0.95628 1.02014 1.20366 0.87471 0.97953 1.03682 1.18784 0.98623 1.06369 0.90686 1.20758 0.90923 0.95907 1.00386 1.24371 0.97784 1.21796 0.98227 1.17237 0.82194 0.75639 0.87261 1.90795 1.82353 1.52254 1.20119 1.45856 1.04870 1.74263 1.11610 1.20340 0.83841 1.02736 0.89684 1.22795 0.93591 1.00064 1.01708 1.23043 0.94963 0.98492 0.98568 1.19886 0.93284 0.88337 0.93490 1.42664 1.17236 1.18682 1.61648 1.19064 0.93480 1.01370 1.23149 0.92341 1.25524 0.99331 1.00666 0.99884 1.69878 1.26155 1.28108 1.39058 0.85395 0.79981 0.79300 0.77018 1.20485 1.22026 1.17599 1.83019 1.04078 1.67213 0.96582 1.24476 0.97862 1.06499 1.01633 1.20546 1.01484 1.04433 0.88043 0.92699 0.91866 0.92442 0.91575 0.92987 0.90875 0.89503 0.83704 0.75560 0.89815 0.91338 0.85173 0.86405 0.94559 0.94561 0.79995 0.93227 0.90489 0.88807 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.42 16 2 C -0.12 -1.13 5.92 30.60 0.18 -0.95 16 3 C -0.06 -0.59 5.11 29.85 0.15 -0.44 16 4 C -0.13 -2.05 5.04 -21.05 -0.11 -2.16 16 5 C -0.05 -0.92 9.78 21.72 0.21 -0.71 16 6 C -0.30 -6.66 6.45 24.08 0.16 -6.50 16 7 C 0.59 15.63 7.78 86.42 0.67 16.30 16 8 O -0.57 -19.10 16.84 -4.37 -0.07 -19.17 16 9 N -0.72 -16.26 5.54 -470.90 -2.61 -18.87 16 10 C 0.16 3.55 6.11 85.63 0.52 4.08 16 11 C -0.16 -3.76 9.24 25.65 0.24 -3.53 16 12 C -0.13 -3.69 9.24 25.65 0.24 -3.46 16 13 C 0.18 6.46 6.70 85.63 0.57 7.03 16 14 N -0.76 -35.25 5.40 -347.16 -1.87 -37.12 16 15 C -0.24 -13.73 10.47 84.03 0.88 -12.85 16 16 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 17 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 18 N -0.98 -62.86 13.97 21.65 0.30 -62.56 16 19 Si 0.96 45.36 27.74 68.60 1.90 47.26 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 23 S 0.22 3.60 22.08 -56.49 -1.25 2.35 16 24 C -0.18 -2.57 6.28 24.68 0.15 -2.42 16 25 C -0.09 -0.68 9.44 71.24 0.67 -0.01 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.59 7.40 -2.39 -0.02 0.57 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.79 8.11 -2.39 -0.02 0.77 16 32 H 0.09 0.70 7.45 -2.38 -0.02 0.68 16 33 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.41 7.89 7.58 -92.71 -0.70 7.19 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.66 7.79 -2.39 -0.02 1.64 16 37 H 0.13 2.74 7.84 -2.91 -0.02 2.72 16 38 H 0.12 3.15 7.84 -2.91 -0.02 3.13 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 1.32 7.79 -2.38 -0.02 1.31 16 41 H 0.37 16.30 5.52 -92.71 -0.51 15.79 16 42 H 0.26 15.75 8.31 -92.71 -0.77 14.97 16 43 H 0.08 0.52 8.11 -2.39 -0.02 0.50 16 44 H 0.09 0.52 7.41 -2.38 -0.02 0.50 16 45 H 0.09 0.54 7.92 -2.39 -0.02 0.53 16 Total: -1.00 -73.04 389.31 1.85 -71.19 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.28 Total: 26.17 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 5.73 Total: -9.25 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -4.18 Total: -118.55 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.07 Total: -19.17 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.25 Total: 2.35 kcal Total: -73.04 1.85 -71.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699340766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.710 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds