Wall clock time and date at job start Tue Mar 31 2020 12:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00157 * 2 1 4 4 C 1.52999 * 109.47517 * 186.64029 * 3 2 1 5 5 C 1.50700 * 109.46975 * 306.64677 * 3 2 1 6 6 O 1.21281 * 119.99907 * 145.00077 * 5 3 2 7 7 N 1.34774 * 119.99581 * 324.99291 * 5 3 2 8 8 C 1.46509 * 119.99663 * 180.02562 * 7 5 3 9 9 C 1.53500 * 114.20442 * 205.00480 * 8 7 5 10 10 N 1.47065 * 87.98154 * 220.14729 * 9 8 7 11 11 C 1.36939 * 136.05627 * 207.08285 * 10 9 8 12 12 H 1.07997 * 120.00145 * 354.74702 * 11 10 9 13 13 C 1.38815 * 120.00004 * 174.74242 * 11 10 9 14 14 N 1.31611 * 120.00252 * 183.95806 * 13 11 10 15 15 Si 1.86800 * 119.99890 * 3.95837 * 13 11 10 16 16 H 1.48500 * 109.47178 * 174.14046 * 15 13 11 17 17 H 1.48498 * 109.47600 * 294.14338 * 15 13 11 18 18 H 1.48509 * 109.47221 * 54.14098 * 15 13 11 19 19 C 1.47071 * 87.88621 * 27.34072 * 10 9 8 20 20 C 1.50707 * 109.46806 * 66.64185 * 3 2 1 21 21 C 1.38214 * 120.01440 * 3.33400 * 20 3 2 22 22 C 1.38223 * 120.02805 * 179.97438 * 21 20 3 23 23 C 1.38266 * 120.04872 * 0.02562 * 22 21 20 24 24 C 1.38184 * 120.02524 * 0.02562 * 23 22 21 25 25 C 1.38441 * 120.00959 * 183.05055 * 20 3 2 26 26 F 1.35095 * 120.02361 * 0.02562 * 25 20 3 27 27 H 1.09000 * 109.47026 * 65.72323 * 1 2 3 28 28 H 1.09008 * 109.46947 * 185.71728 * 1 2 3 29 29 H 1.08995 * 109.47638 * 305.71851 * 1 2 3 30 30 H 1.08996 * 109.47113 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.47215 * 300.00973 * 4 3 2 32 32 H 1.09007 * 109.46503 * 59.99887 * 4 3 2 33 33 H 0.96995 * 120.00453 * 0.02562 * 7 5 3 34 34 H 1.09000 * 113.28234 * 338.06723 * 8 7 5 35 35 H 1.08997 * 113.46715 * 105.37116 * 9 8 7 36 36 H 1.09004 * 113.46723 * 334.92799 * 9 8 7 37 37 H 0.97006 * 120.00008 * 5.01086 * 14 13 11 38 38 H 1.09007 * 113.46198 * 87.43740 * 19 10 9 39 39 H 1.08998 * 113.46999 * 217.87311 * 19 10 9 40 40 H 1.08002 * 119.98637 * 359.97438 * 21 20 3 41 41 H 1.07995 * 119.97837 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.98971 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.00605 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5266 1.1887 -0.1668 5 6 1.4398 2.1093 -1.1400 6 8 1.2550 3.3008 -1.0090 7 7 1.1351 1.5041 -2.3050 8 6 0.5811 2.2856 -3.4135 9 6 -0.2583 1.4662 -4.4035 10 7 0.3575 2.2440 -5.4891 11 6 0.0015 2.6210 -6.7566 12 1 -0.9166 2.2544 -7.1912 13 6 0.8208 3.4745 -7.4827 14 7 0.4419 3.8990 -8.6694 15 14 2.4612 4.0207 -6.7753 16 1 3.2027 4.8064 -7.7942 17 1 2.2270 4.8628 -5.5749 18 1 3.2582 2.8268 -6.3945 19 6 1.5264 2.4333 -4.6170 20 6 1.6999 1.9935 1.3045 21 6 1.0134 1.3182 2.2960 22 6 0.7291 1.9488 3.4927 23 6 1.1305 3.2557 3.6991 24 6 1.8160 3.9331 2.7088 25 6 2.1074 3.3001 1.5122 26 9 2.7829 3.9593 0.5456 27 1 -0.3633 0.4225 -0.9368 28 1 -0.3633 -1.0226 0.1024 29 1 -0.3634 0.5999 0.8343 30 1 3.9698 2.1844 -0.1672 31 1 3.9391 0.6072 0.6577 32 1 3.7510 0.6910 -1.1103 33 1 1.2827 0.5511 -2.4097 34 1 0.1120 3.2157 -3.0927 35 1 -1.3310 1.6326 -4.3047 36 1 0.0046 0.4085 -4.4240 37 1 -0.4399 3.6749 -9.0059 38 1 2.2599 1.6305 -4.6939 39 1 1.9743 3.4235 -4.7001 40 1 0.6991 0.2975 2.1357 41 1 0.1924 1.4206 4.2668 42 1 0.9075 3.7476 4.6344 43 1 2.1290 4.9541 2.8702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753378502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:07 Heat of formation + Delta-G solvation = -12.084222 kcal Electronic energy + Delta-G solvation = -28321.569394 eV Core-core repulsion = 24284.783396 eV Total energy + Delta-G solvation = -4036.785999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.81417 -41.00197 -39.22665 -38.18596 -37.42430 -33.77455 -33.01921 -32.14297 -31.00464 -29.87737 -27.85882 -26.66193 -25.43846 -24.94720 -23.21100 -22.99180 -21.72729 -20.23977 -19.76499 -18.07228 -17.90702 -17.48615 -16.84107 -16.27085 -16.06795 -15.68521 -15.49793 -15.38212 -15.12248 -14.92473 -14.69089 -14.13861 -13.76668 -13.57670 -13.16385 -13.11112 -12.73202 -12.61851 -12.51231 -12.31997 -12.29841 -12.00357 -11.99618 -11.71856 -11.66228 -11.38450 -11.27664 -10.64399 -10.50484 -10.37636 -9.57787 -9.51718 -9.19699 -9.15190 -8.95589 -8.81751 -8.55314 -7.21872 -6.34398 -3.28705 0.86378 0.98884 2.51575 2.98432 3.34560 3.41478 3.43593 3.46015 3.66087 4.10850 4.21304 4.46509 4.56239 4.57880 4.64432 4.76900 4.83095 4.99793 5.06657 5.07404 5.15319 5.17392 5.36402 5.37644 5.41285 5.50422 5.55708 5.70124 5.78641 5.84485 5.85857 5.92348 6.00807 6.09984 6.11588 6.22336 6.29199 6.36054 6.60009 6.65196 6.92624 7.02120 7.58164 8.19308 8.23157 8.93206 9.44994 10.28485 11.17176 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.003574 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.311871 B = 7832.504714 C = 8386.620154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.361 6.361 3 C 0.148 3.852 4 C -0.139 4.139 5 C 0.492 3.508 6 O -0.517 6.517 7 N -0.706 5.706 8 C 0.100 3.900 9 C 0.117 3.883 10 N -0.620 5.620 11 C -0.305 4.305 12 H 0.085 0.915 13 C -0.021 4.021 14 N -0.931 5.931 15 Si 1.071 2.929 16 H -0.294 1.294 17 H -0.289 1.289 18 H -0.290 1.290 19 C 0.080 3.920 20 C -0.147 4.147 21 C -0.081 4.081 22 C -0.142 4.142 23 C -0.085 4.085 24 C -0.164 4.164 25 C 0.147 3.853 26 F -0.118 7.118 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.403 0.597 34 H 0.122 0.878 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.261 0.739 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.141 0.859 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -8.167 27.645 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.280 6.280 3 C 0.105 3.895 4 C -0.196 4.196 5 C 0.276 3.724 6 O -0.392 6.392 7 N -0.358 5.358 8 C -0.005 4.005 9 C -0.010 4.010 10 N -0.349 5.349 11 C -0.431 4.431 12 H 0.102 0.898 13 C -0.220 4.220 14 N -0.573 5.573 15 Si 0.904 3.096 16 H -0.221 1.221 17 H -0.218 1.218 18 H -0.217 1.217 19 C -0.046 4.046 20 C -0.149 4.149 21 C -0.098 4.098 22 C -0.160 4.160 23 C -0.103 4.103 24 C -0.183 4.183 25 C 0.128 3.872 26 F -0.096 7.096 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.239 0.761 34 H 0.140 0.860 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.159 0.841 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.869 -6.492 27.045 28.081 hybrid contribution -1.450 -1.153 0.039 1.853 sum 2.419 -7.645 27.084 28.247 Atomic orbital electron populations 1.23320 0.80534 1.03662 1.02259 1.88002 1.20409 1.24927 1.94635 1.20488 0.96311 0.82879 0.89816 1.21837 0.89403 1.04253 1.04122 1.20915 0.78692 0.88627 0.84189 1.90768 1.51581 1.14690 1.82140 1.46061 1.64160 1.12637 1.12950 1.23507 0.96775 0.96719 0.83494 1.22638 0.97222 0.94767 0.86406 1.45779 1.14745 1.60971 1.13369 1.20134 1.08475 1.26230 0.88270 0.89769 1.25710 1.04726 0.95901 0.95636 1.70924 1.21644 1.47495 1.17254 0.83698 0.75840 0.76205 0.73825 1.22138 1.21779 1.21681 1.23307 0.92515 1.00236 0.88572 1.19994 1.03635 0.94193 0.97042 1.21045 0.96152 1.00434 0.92214 1.21134 1.01953 0.95372 0.97518 1.21048 0.96246 0.94501 0.98523 1.21175 1.02733 1.01342 0.93053 1.17376 0.94022 0.89749 0.86098 1.91569 1.76447 1.80195 1.61383 0.92518 0.88570 0.92430 0.89707 0.90278 0.90384 0.76134 0.86031 0.92953 0.94226 0.92847 0.93745 0.92282 0.84132 0.85282 0.85091 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.21 101.05 0.93 0.91 16 2 O -0.36 -3.78 9.06 -35.23 -0.32 -4.10 16 3 C 0.15 1.80 0.80 -92.92 -0.07 1.73 16 4 C -0.14 -1.50 8.64 37.16 0.32 -1.18 16 5 C 0.49 7.51 5.46 -10.99 -0.06 7.45 16 6 O -0.52 -9.73 12.81 5.56 0.07 -9.66 16 7 N -0.71 -10.37 4.11 -53.49 -0.22 -10.59 16 8 C 0.10 1.84 4.62 -67.68 -0.31 1.53 16 9 C 0.12 2.25 8.45 -8.50 -0.07 2.18 16 10 N -0.62 -15.42 3.69 -184.61 -0.68 -16.10 16 11 C -0.31 -8.89 11.09 -15.06 -0.17 -9.06 16 12 H 0.08 2.55 8.05 -52.49 -0.42 2.13 16 13 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 14 N -0.93 -29.71 13.70 55.49 0.76 -28.95 16 15 Si 1.07 27.72 25.10 -169.99 -4.27 23.46 16 16 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 17 H -0.29 -7.25 6.35 56.52 0.36 -6.89 16 18 H -0.29 -7.02 6.66 56.52 0.38 -6.64 16 19 C 0.08 1.75 5.75 -8.37 -0.05 1.71 16 20 C -0.15 -1.75 4.42 -104.55 -0.46 -2.22 16 21 C -0.08 -0.77 7.70 -39.60 -0.30 -1.07 16 22 C -0.14 -1.13 10.04 -39.58 -0.40 -1.53 16 23 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 24 C -0.16 -1.71 10.03 -39.51 -0.40 -2.10 16 25 C 0.15 1.91 6.20 -39.42 -0.24 1.67 16 26 F -0.12 -1.82 12.88 2.25 0.03 -1.79 16 27 H 0.06 0.58 6.18 -51.93 -0.32 0.26 16 28 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.06 0.51 5.12 -51.93 -0.27 0.24 16 30 H 0.08 0.99 6.55 -51.93 -0.34 0.65 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.40 4.98 7.91 -40.82 -0.32 4.65 16 34 H 0.12 2.44 7.45 -51.93 -0.39 2.06 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 37 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.06 1.40 4.01 -51.93 -0.21 1.19 16 40 H 0.14 1.12 5.56 -52.49 -0.29 0.83 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -35.01 341.95 -6.83 -41.84 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.58 Total: 2.55 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.78 Total: -1.80 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.14 Total: -55.65 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.25 Total: -13.76 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.79 kcal Atomic # 14 Polarization: 27.72 SS G_CDS: -4.27 Total: 23.46 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.01 -6.83 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753378502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.760 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds