Wall clock time and date at job start Tue Mar 31 2020 12:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00157 * 2 1 4 4 C 1.52999 * 109.47517 * 186.64029 * 3 2 1 5 5 C 1.50700 * 109.46975 * 306.64677 * 3 2 1 6 6 O 1.21281 * 119.99907 * 145.00077 * 5 3 2 7 7 N 1.34774 * 119.99581 * 324.99291 * 5 3 2 8 8 C 1.46509 * 119.99663 * 180.02562 * 7 5 3 9 9 C 1.53500 * 114.20442 * 205.00480 * 8 7 5 10 10 N 1.47065 * 87.98154 * 220.14729 * 9 8 7 11 11 C 1.36939 * 136.05627 * 207.08285 * 10 9 8 12 12 H 1.07997 * 120.00145 * 354.74702 * 11 10 9 13 13 C 1.38815 * 120.00004 * 174.74242 * 11 10 9 14 14 N 1.31611 * 120.00252 * 183.95806 * 13 11 10 15 15 Si 1.86800 * 119.99890 * 3.95837 * 13 11 10 16 16 H 1.48500 * 109.47178 * 174.14046 * 15 13 11 17 17 H 1.48498 * 109.47600 * 294.14338 * 15 13 11 18 18 H 1.48509 * 109.47221 * 54.14098 * 15 13 11 19 19 C 1.47071 * 87.88621 * 27.34072 * 10 9 8 20 20 C 1.50707 * 109.46806 * 66.64185 * 3 2 1 21 21 C 1.38214 * 120.01440 * 3.33400 * 20 3 2 22 22 C 1.38223 * 120.02805 * 179.97438 * 21 20 3 23 23 C 1.38266 * 120.04872 * 0.02562 * 22 21 20 24 24 C 1.38184 * 120.02524 * 0.02562 * 23 22 21 25 25 C 1.38441 * 120.00959 * 183.05055 * 20 3 2 26 26 F 1.35095 * 120.02361 * 0.02562 * 25 20 3 27 27 H 1.09000 * 109.47026 * 65.72323 * 1 2 3 28 28 H 1.09008 * 109.46947 * 185.71728 * 1 2 3 29 29 H 1.08995 * 109.47638 * 305.71851 * 1 2 3 30 30 H 1.08996 * 109.47113 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.47215 * 300.00973 * 4 3 2 32 32 H 1.09007 * 109.46503 * 59.99887 * 4 3 2 33 33 H 0.96995 * 120.00453 * 0.02562 * 7 5 3 34 34 H 1.09000 * 113.28234 * 338.06723 * 8 7 5 35 35 H 1.08997 * 113.46715 * 105.37116 * 9 8 7 36 36 H 1.09004 * 113.46723 * 334.92799 * 9 8 7 37 37 H 0.97006 * 120.00008 * 5.01086 * 14 13 11 38 38 H 1.09007 * 113.46198 * 87.43740 * 19 10 9 39 39 H 1.08998 * 113.46999 * 217.87311 * 19 10 9 40 40 H 1.08002 * 119.98637 * 359.97438 * 21 20 3 41 41 H 1.07995 * 119.97837 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.98971 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.00605 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5266 1.1887 -0.1668 5 6 1.4398 2.1093 -1.1400 6 8 1.2550 3.3008 -1.0090 7 7 1.1351 1.5041 -2.3050 8 6 0.5811 2.2856 -3.4135 9 6 -0.2583 1.4662 -4.4035 10 7 0.3575 2.2440 -5.4891 11 6 0.0015 2.6210 -6.7566 12 1 -0.9166 2.2544 -7.1912 13 6 0.8208 3.4745 -7.4827 14 7 0.4419 3.8990 -8.6694 15 14 2.4612 4.0207 -6.7753 16 1 3.2027 4.8064 -7.7942 17 1 2.2270 4.8628 -5.5749 18 1 3.2582 2.8268 -6.3945 19 6 1.5264 2.4333 -4.6170 20 6 1.6999 1.9935 1.3045 21 6 1.0134 1.3182 2.2960 22 6 0.7291 1.9488 3.4927 23 6 1.1305 3.2557 3.6991 24 6 1.8160 3.9331 2.7088 25 6 2.1074 3.3001 1.5122 26 9 2.7829 3.9593 0.5456 27 1 -0.3633 0.4225 -0.9368 28 1 -0.3633 -1.0226 0.1024 29 1 -0.3634 0.5999 0.8343 30 1 3.9698 2.1844 -0.1672 31 1 3.9391 0.6072 0.6577 32 1 3.7510 0.6910 -1.1103 33 1 1.2827 0.5511 -2.4097 34 1 0.1120 3.2157 -3.0927 35 1 -1.3310 1.6326 -4.3047 36 1 0.0046 0.4085 -4.4240 37 1 -0.4399 3.6749 -9.0059 38 1 2.2599 1.6305 -4.6939 39 1 1.9743 3.4235 -4.7001 40 1 0.6991 0.2975 2.1357 41 1 0.1924 1.4206 4.2668 42 1 0.9075 3.7476 4.6344 43 1 2.1290 4.9541 2.8702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753378502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:06 Heat of formation + Delta-G solvation = -37.291219 kcal Electronic energy + Delta-G solvation = -28322.662452 eV Core-core repulsion = 24284.783396 eV Total energy + Delta-G solvation = -4037.879056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.78474 -42.04410 -40.52222 -39.35863 -38.42313 -35.36557 -34.15399 -33.86075 -31.73076 -30.67152 -29.73555 -27.39597 -27.12281 -26.06900 -24.57441 -23.73767 -23.01508 -21.66668 -21.13555 -19.66688 -19.06944 -18.75430 -17.84474 -17.44515 -17.13445 -17.13111 -16.54580 -16.47235 -16.14230 -15.88650 -15.81330 -15.51292 -15.18652 -15.06645 -14.46891 -13.99902 -13.97054 -13.70136 -13.55440 -13.51721 -13.35977 -13.27243 -13.19680 -13.07282 -12.73037 -12.52589 -12.41651 -12.25852 -12.06907 -11.47897 -11.35144 -11.28951 -11.13309 -10.59476 -10.03872 -9.91924 -9.58886 -9.30052 -8.69347 -5.55222 0.12550 0.25385 1.32943 1.34693 1.41335 1.61352 1.85478 2.45812 2.50491 2.63175 2.93341 3.13794 3.28770 3.42015 3.47452 3.52577 3.79920 3.92470 4.06411 4.14652 4.23772 4.37913 4.38668 4.43838 4.47659 4.49381 4.53043 4.56913 4.64721 4.67318 4.84524 4.86691 4.92125 5.02730 5.09453 5.12770 5.18957 5.32895 5.43824 5.45312 5.79168 5.88411 5.94170 6.41362 6.63002 7.05840 7.24525 8.16336 8.84783 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.003574 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.311871 B = 7832.504714 C = 8386.620154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.356 6.356 3 C 0.157 3.843 4 C -0.139 4.139 5 C 0.491 3.509 6 O -0.554 6.554 7 N -0.693 5.693 8 C 0.126 3.874 9 C 0.124 3.876 10 N -0.654 5.654 11 C -0.289 4.289 12 H 0.060 0.940 13 C -0.079 4.079 14 N -0.968 5.968 15 Si 1.108 2.892 16 H -0.301 1.301 17 H -0.283 1.283 18 H -0.263 1.263 19 C 0.073 3.927 20 C -0.164 4.164 21 C -0.083 4.083 22 C -0.133 4.133 23 C -0.080 4.080 24 C -0.176 4.176 25 C 0.109 3.891 26 F -0.143 7.143 27 H 0.042 0.958 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.418 0.582 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.249 0.751 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 -10.464 31.347 33.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.274 6.274 3 C 0.114 3.886 4 C -0.196 4.196 5 C 0.276 3.724 6 O -0.432 6.432 7 N -0.346 5.346 8 C 0.020 3.980 9 C -0.002 4.002 10 N -0.383 5.383 11 C -0.416 4.416 12 H 0.078 0.922 13 C -0.271 4.271 14 N -0.613 5.613 15 Si 0.936 3.064 16 H -0.228 1.228 17 H -0.211 1.211 18 H -0.188 1.188 19 C -0.053 4.053 20 C -0.166 4.166 21 C -0.101 4.101 22 C -0.151 4.151 23 C -0.098 4.098 24 C -0.194 4.194 25 C 0.089 3.911 26 F -0.121 7.121 27 H 0.061 0.939 28 H 0.144 0.856 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.256 0.744 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.176 0.824 41 H 0.182 0.818 42 H 0.181 0.819 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.059 -8.863 30.812 32.317 hybrid contribution -1.644 -0.514 -0.946 1.965 sum 2.415 -9.377 29.866 31.397 Atomic orbital electron populations 1.23502 0.79616 1.05542 1.01633 1.88021 1.21304 1.23561 1.94500 1.20339 0.96692 0.83013 0.88575 1.21859 0.88658 1.03826 1.05291 1.21605 0.77630 0.88430 0.84715 1.90759 1.52919 1.16651 1.82822 1.45820 1.63838 1.13013 1.11943 1.22789 0.95200 0.96316 0.83728 1.22813 0.97574 0.95792 0.83998 1.45800 1.17200 1.62403 1.12893 1.20024 1.07044 1.24677 0.89888 0.92244 1.26860 1.07787 0.96738 0.95752 1.71006 1.21416 1.49878 1.19021 0.83233 0.73042 0.76906 0.73216 1.22846 1.21125 1.18822 1.23507 0.92632 0.99871 0.89283 1.20098 1.04829 0.94099 0.97552 1.21324 0.95428 1.01157 0.92189 1.21590 1.00692 0.95231 0.97561 1.21471 0.94670 0.94698 0.98943 1.21437 1.03126 1.01984 0.92893 1.17834 0.95747 0.90740 0.86738 1.91496 1.77287 1.80798 1.62563 0.93904 0.85557 0.92184 0.91175 0.88384 0.89723 0.74351 0.87935 0.92356 0.90855 0.94135 0.91681 0.94073 0.82435 0.81815 0.81884 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.21 113.37 1.04 0.94 16 2 O -0.36 -6.33 9.06 -148.98 -1.35 -7.68 16 3 C 0.16 3.54 0.80 -12.28 -0.01 3.53 16 4 C -0.14 -2.80 8.64 71.98 0.62 -2.17 16 5 C 0.49 14.44 5.46 87.66 0.48 14.92 16 6 O -0.55 -21.00 12.81 -3.03 -0.04 -21.04 16 7 N -0.69 -18.97 4.11 -441.52 -1.81 -20.78 16 8 C 0.13 4.46 4.62 45.55 0.21 4.67 16 9 C 0.12 4.51 8.45 83.18 0.70 5.22 16 10 N -0.65 -31.99 3.69 -737.97 -2.72 -34.72 16 11 C -0.29 -17.07 11.09 84.03 0.93 -16.14 16 12 H 0.06 3.72 8.05 -2.91 -0.02 3.70 16 13 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16 14 N -0.97 -63.71 13.70 21.65 0.30 -63.41 16 15 Si 1.11 56.59 25.10 68.60 1.72 58.31 16 16 H -0.30 -15.51 7.11 99.48 0.71 -14.81 16 17 H -0.28 -14.01 6.35 99.48 0.63 -13.38 16 18 H -0.26 -12.09 6.66 99.48 0.66 -11.43 16 19 C 0.07 3.08 5.75 83.27 0.48 3.56 16 20 C -0.16 -3.66 4.42 -19.82 -0.09 -3.75 16 21 C -0.08 -1.32 7.70 22.26 0.17 -1.15 16 22 C -0.13 -1.60 10.04 22.27 0.22 -1.37 16 23 C -0.08 -1.06 10.04 22.26 0.22 -0.84 16 24 C -0.18 -3.46 10.03 22.31 0.22 -3.23 16 25 C 0.11 2.80 6.20 22.37 0.14 2.94 16 26 F -0.14 -4.57 12.88 44.97 0.58 -4.00 16 27 H 0.04 0.76 6.18 -2.39 -0.01 0.74 16 28 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.06 0.87 5.12 -2.39 -0.01 0.86 16 30 H 0.07 1.63 6.55 -2.39 -0.02 1.61 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.42 9.03 7.91 -92.71 -0.73 8.29 16 34 H 0.10 4.10 7.45 -2.39 -0.02 4.08 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 37 H 0.25 16.34 8.73 -92.70 -0.81 15.53 16 38 H 0.07 2.51 8.07 -2.38 -0.02 2.49 16 39 H 0.04 1.91 4.01 -2.39 -0.01 1.90 16 40 H 0.16 1.88 5.56 -2.91 -0.02 1.86 16 41 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -79.10 341.95 2.65 -76.45 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.16 Total: 14.13 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 5.82 Total: 2.74 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -4.24 Total: -118.91 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.39 Total: -28.72 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.58 Total: -4.00 kcal Atomic # 14 Polarization: 56.59 SS G_CDS: 1.72 Total: 58.31 kcal Total: -79.10 2.65 -76.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753378502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.157 kcal (2) G-P(sol) polarization free energy of solvation -79.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds