Wall clock time and date at job start Tue Mar 31 2020 13:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47221 * 2 1 4 4 C 1.37470 * 123.35202 * 264.98061 * 3 2 1 5 5 C 1.33819 * 115.10221 * 180.02562 * 4 3 2 6 6 S 1.70616 * 110.95252 * 359.72311 * 5 4 3 7 7 C 1.36647 * 123.35198 * 84.99250 * 3 2 1 8 8 C 1.46588 * 125.45877 * 359.97438 * 7 3 2 9 9 O 1.21703 * 119.99931 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99989 * 179.72278 * 8 7 3 11 11 C 1.47021 * 125.64884 * 359.96001 * 10 8 7 12 12 C 1.54333 * 107.26888 * 178.85291 * 11 10 8 13 13 C 1.55157 * 103.01763 * 338.14374 * 12 11 10 14 14 H 1.09006 * 111.03602 * 277.21588 * 13 12 11 15 15 C 1.53004 * 111.00577 * 153.37791 * 13 12 11 16 16 C 1.53002 * 109.47186 * 181.34712 * 15 13 12 17 17 N 1.46502 * 109.46919 * 180.02562 * 16 15 13 18 18 C 1.36929 * 119.99877 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00056 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00127 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00123 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99966 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47004 * 90.00311 * 22 20 18 24 24 H 1.48497 * 109.47149 * 210.00266 * 22 20 18 25 25 H 1.48504 * 109.46656 * 330.00214 * 22 20 18 26 26 C 1.47419 * 125.64891 * 180.27532 * 10 8 7 27 27 H 1.08997 * 109.47221 * 60.00584 * 1 2 3 28 28 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47200 * 299.99868 * 1 2 3 30 30 H 1.09001 * 109.47417 * 239.99457 * 2 1 3 31 31 H 1.09002 * 109.46947 * 119.99825 * 2 1 3 32 32 H 1.08004 * 122.44487 * 0.03378 * 4 3 2 33 33 H 1.07994 * 124.52007 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.88257 * 298.40212 * 11 10 8 35 35 H 1.09000 * 109.88161 * 59.56145 * 11 10 8 36 36 H 1.08995 * 110.85292 * 219.67757 * 12 11 10 37 37 H 1.08997 * 110.66610 * 96.52009 * 12 11 10 38 38 H 1.08998 * 109.47254 * 301.35489 * 15 13 12 39 39 H 1.09006 * 109.46222 * 61.35057 * 15 13 12 40 40 H 1.08998 * 109.47179 * 300.00302 * 16 15 13 41 41 H 1.09001 * 109.46877 * 60.00157 * 16 15 13 42 42 H 0.96998 * 120.00032 * 0.02562 * 17 16 15 43 43 H 0.97002 * 119.99850 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.36637 * 322.92547 * 26 10 8 45 45 H 1.08999 * 110.36803 * 85.24509 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3790 2.0999 -1.1439 5 6 2.8052 3.3539 -0.9526 6 16 2.7862 3.7585 0.7048 7 6 2.1889 2.1623 1.1371 8 6 1.8993 1.7027 2.4986 9 8 1.4821 0.5746 2.6842 10 7 2.0998 2.5278 3.5453 11 6 2.6032 3.9068 3.4652 12 6 2.6403 4.4652 4.9034 13 6 1.6293 3.5602 5.6559 14 1 0.6070 3.9084 5.5081 15 6 1.9682 3.4802 7.1458 16 6 0.9717 2.5544 7.8465 17 7 1.2959 2.4783 9.2732 18 6 0.5358 1.7031 10.1076 19 1 -0.3031 1.1481 9.7140 20 6 0.8426 1.6314 11.4595 21 7 0.1116 0.8866 12.2616 22 14 2.2929 2.5918 12.1403 23 1 1.8372 3.9385 12.5694 24 1 2.8632 1.8680 13.3048 25 1 3.3312 2.7325 11.0880 26 6 1.8568 2.1947 4.9606 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3122 1.6539 -2.1253 33 1 3.1155 4.0220 -1.7423 34 1 3.6059 3.9111 3.0377 35 1 1.9341 4.5106 2.8522 36 1 2.3162 5.5056 4.9242 37 1 3.6386 4.3652 5.3293 38 1 2.9775 3.0871 7.2683 39 1 1.9103 4.4759 7.5855 40 1 -0.0375 2.9476 7.7241 41 1 1.0296 1.5588 7.4067 42 1 2.0490 2.9770 9.6267 43 1 0.3262 0.8362 13.2062 44 1 0.9701 1.5681 5.0561 45 1 2.7252 1.6921 5.3866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754944403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:33 Heat of formation + Delta-G solvation = 1.681404 kcal Electronic energy + Delta-G solvation = -24529.669824 eV Core-core repulsion = 21059.693924 eV Total energy + Delta-G solvation = -3469.975900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38935 -38.90120 -37.41281 -35.34861 -33.14881 -32.94232 -31.32205 -29.93861 -29.71175 -27.38964 -25.69433 -24.20251 -22.99043 -22.55520 -21.26795 -21.07364 -20.18943 -18.50940 -18.23508 -17.55356 -16.46999 -16.22894 -15.88569 -15.26181 -14.58142 -14.55581 -14.32244 -14.17243 -13.99840 -13.81018 -13.48041 -13.22627 -13.11393 -12.82072 -12.68849 -12.59122 -12.46251 -12.09840 -11.97112 -11.81565 -11.54554 -11.29305 -11.13882 -10.93865 -10.89793 -10.73756 -10.55168 -10.37269 -10.08613 -9.97969 -9.56835 -9.17166 -8.94223 -8.87432 -8.60676 -7.21210 -5.74469 -3.10122 0.23044 1.19338 1.60095 2.08685 2.73672 3.00345 3.38301 3.40497 3.46181 4.16561 4.33117 4.50637 4.57068 4.60784 4.66859 4.86990 4.90025 4.93836 5.11383 5.16802 5.26308 5.28041 5.35416 5.45451 5.50361 5.53818 5.58143 5.68098 5.69290 5.72994 5.81013 5.83993 5.93464 5.96599 6.00716 6.10429 6.12014 6.20315 6.25413 6.27944 6.73995 6.77184 7.28411 7.96301 8.02306 8.44551 9.23761 9.95935 10.15642 11.44052 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.002480 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.170605 B =11286.117994 C =12228.026359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 C -0.018 4.018 4 C -0.146 4.146 5 C -0.245 4.245 6 S 0.206 5.794 7 C -0.266 4.266 8 C 0.602 3.398 9 O -0.521 6.521 10 N -0.616 5.616 11 C 0.087 3.913 12 C -0.123 4.123 13 C -0.094 4.094 14 H 0.088 0.912 15 C -0.119 4.119 16 C 0.155 3.845 17 N -0.758 5.758 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.112 3.888 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.086 0.914 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.526 8.985 -30.384 32.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 C -0.034 4.034 4 C -0.177 4.177 5 C -0.383 4.383 6 S 0.475 5.525 7 C -0.386 4.386 8 C 0.391 3.609 9 O -0.399 6.399 10 N -0.350 5.350 11 C -0.037 4.037 12 C -0.161 4.161 13 C -0.114 4.114 14 H 0.107 0.893 15 C -0.157 4.157 16 C 0.027 3.973 17 N -0.403 5.403 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.009 4.009 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.503 9.515 -29.477 31.871 hybrid contribution 0.763 -0.419 -0.480 0.995 sum 8.266 9.096 -29.958 32.381 Atomic orbital electron populations 1.21602 0.94171 1.01929 1.01736 1.20430 0.96629 0.90510 1.03631 1.19530 0.95903 0.97504 0.90439 1.19905 1.03938 0.94316 0.99580 1.25556 1.07762 1.01380 1.03569 1.83328 1.60401 1.11457 0.97282 1.24374 1.17371 0.99569 0.97322 1.16527 0.78029 0.84327 0.82024 1.90827 1.46091 1.18343 1.84649 1.48353 1.65405 1.13971 1.07244 1.22173 0.99431 0.82967 0.99142 1.22689 1.00923 0.99956 0.92529 1.22348 0.99869 0.94031 0.95154 0.89335 1.21737 1.00500 1.01150 0.92292 1.20666 0.95595 0.96356 0.84634 1.42713 1.35973 1.57648 1.03972 1.19078 1.08837 1.20250 0.89191 0.89224 1.24693 0.98815 0.99809 0.96021 1.69708 1.40968 1.43332 1.04284 0.86518 0.83347 0.79955 0.78531 1.21109 1.21751 1.20340 1.22428 1.02576 0.97576 0.78348 0.93300 0.92203 0.92157 0.91337 0.88665 0.84094 0.81711 0.90856 0.90871 0.89571 0.90007 0.91577 0.91236 0.95528 0.95408 0.80725 0.93080 0.89562 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.78 37.16 0.36 -1.00 16 2 C -0.07 -0.74 5.50 -27.88 -0.15 -0.90 16 3 C -0.02 -0.19 5.16 -105.48 -0.54 -0.74 16 4 C -0.15 -1.20 9.96 -41.41 -0.41 -1.61 16 5 C -0.25 -1.74 10.92 29.18 0.32 -1.43 16 6 S 0.21 1.59 18.43 -107.50 -1.98 -0.39 16 7 C -0.27 -2.97 6.38 -36.79 -0.23 -3.20 16 8 C 0.60 8.16 7.81 -12.89 -0.10 8.06 16 9 O -0.52 -8.57 13.97 5.19 0.07 -8.49 16 10 N -0.62 -7.36 3.33 -172.09 -0.57 -7.93 16 11 C 0.09 0.75 5.17 -3.06 -0.02 0.74 16 12 C -0.12 -1.02 6.42 -24.89 -0.16 -1.18 16 13 C -0.09 -1.05 3.08 -88.47 -0.27 -1.32 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.12 -1.63 4.84 -26.73 -0.13 -1.76 16 16 C 0.15 2.92 6.11 -4.04 -0.02 2.89 16 17 N -0.76 -18.13 5.41 -59.91 -0.32 -18.46 16 18 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 19 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 21 N -0.93 -29.80 13.97 55.49 0.78 -29.02 16 22 Si 0.89 22.21 27.74 -169.99 -4.71 17.50 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 26 C 0.11 1.43 5.56 -2.53 -0.01 1.42 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.73 7.59 -51.93 -0.39 0.33 16 30 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.10 1.18 6.33 -51.93 -0.33 0.85 16 32 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.07 0.56 7.01 -51.93 -0.36 0.19 16 35 H 0.07 0.56 6.80 -51.93 -0.35 0.20 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 38 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.03 0.54 7.46 -51.93 -0.39 0.16 16 42 H 0.36 8.31 5.53 -40.82 -0.23 8.08 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 44 H 0.09 1.24 7.96 -51.93 -0.41 0.83 16 45 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -34.19 368.53 -9.94 -44.13 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.12 Total: 4.34 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.63 Total: -7.23 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.12 Total: -55.41 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.07 Total: -8.49 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -1.98 Total: -0.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.19 -9.94 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754944403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.814 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds