Wall clock time and date at job start Tue Mar 31 2020 13:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47221 * 2 1 4 4 C 1.37470 * 123.35202 * 264.98061 * 3 2 1 5 5 C 1.33819 * 115.10221 * 180.02562 * 4 3 2 6 6 S 1.70616 * 110.95252 * 359.72311 * 5 4 3 7 7 C 1.36647 * 123.35198 * 84.99250 * 3 2 1 8 8 C 1.46588 * 125.45877 * 359.97438 * 7 3 2 9 9 O 1.21703 * 119.99931 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99989 * 179.72278 * 8 7 3 11 11 C 1.47021 * 125.64884 * 359.96001 * 10 8 7 12 12 C 1.54333 * 107.26888 * 178.85291 * 11 10 8 13 13 C 1.55157 * 103.01763 * 338.14374 * 12 11 10 14 14 H 1.09006 * 111.03602 * 277.21588 * 13 12 11 15 15 C 1.53004 * 111.00577 * 153.37791 * 13 12 11 16 16 C 1.53002 * 109.47186 * 181.34712 * 15 13 12 17 17 N 1.46502 * 109.46919 * 180.02562 * 16 15 13 18 18 C 1.36929 * 119.99877 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00056 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00127 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00123 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99966 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47004 * 90.00311 * 22 20 18 24 24 H 1.48497 * 109.47149 * 210.00266 * 22 20 18 25 25 H 1.48504 * 109.46656 * 330.00214 * 22 20 18 26 26 C 1.47419 * 125.64891 * 180.27532 * 10 8 7 27 27 H 1.08997 * 109.47221 * 60.00584 * 1 2 3 28 28 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47200 * 299.99868 * 1 2 3 30 30 H 1.09001 * 109.47417 * 239.99457 * 2 1 3 31 31 H 1.09002 * 109.46947 * 119.99825 * 2 1 3 32 32 H 1.08004 * 122.44487 * 0.03378 * 4 3 2 33 33 H 1.07994 * 124.52007 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.88257 * 298.40212 * 11 10 8 35 35 H 1.09000 * 109.88161 * 59.56145 * 11 10 8 36 36 H 1.08995 * 110.85292 * 219.67757 * 12 11 10 37 37 H 1.08997 * 110.66610 * 96.52009 * 12 11 10 38 38 H 1.08998 * 109.47254 * 301.35489 * 15 13 12 39 39 H 1.09006 * 109.46222 * 61.35057 * 15 13 12 40 40 H 1.08998 * 109.47179 * 300.00302 * 16 15 13 41 41 H 1.09001 * 109.46877 * 60.00157 * 16 15 13 42 42 H 0.96998 * 120.00032 * 0.02562 * 17 16 15 43 43 H 0.97002 * 119.99850 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.36637 * 322.92547 * 26 10 8 45 45 H 1.08999 * 110.36803 * 85.24509 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3790 2.0999 -1.1439 5 6 2.8052 3.3539 -0.9526 6 16 2.7862 3.7585 0.7048 7 6 2.1889 2.1623 1.1371 8 6 1.8993 1.7027 2.4986 9 8 1.4821 0.5746 2.6842 10 7 2.0998 2.5278 3.5453 11 6 2.6032 3.9068 3.4652 12 6 2.6403 4.4652 4.9034 13 6 1.6293 3.5602 5.6559 14 1 0.6070 3.9084 5.5081 15 6 1.9682 3.4802 7.1458 16 6 0.9717 2.5544 7.8465 17 7 1.2959 2.4783 9.2732 18 6 0.5358 1.7031 10.1076 19 1 -0.3031 1.1481 9.7140 20 6 0.8426 1.6314 11.4595 21 7 0.1116 0.8866 12.2616 22 14 2.2929 2.5918 12.1403 23 1 1.8372 3.9385 12.5694 24 1 2.8632 1.8680 13.3048 25 1 3.3312 2.7325 11.0880 26 6 1.8568 2.1947 4.9606 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3122 1.6539 -2.1253 33 1 3.1155 4.0220 -1.7423 34 1 3.6059 3.9111 3.0377 35 1 1.9341 4.5106 2.8522 36 1 2.3162 5.5056 4.9242 37 1 3.6386 4.3652 5.3293 38 1 2.9775 3.0871 7.2683 39 1 1.9103 4.4759 7.5855 40 1 -0.0375 2.9476 7.7241 41 1 1.0296 1.5588 7.4067 42 1 2.0490 2.9770 9.6267 43 1 0.3262 0.8362 13.2062 44 1 0.9701 1.5681 5.0561 45 1 2.7252 1.6921 5.3866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754944403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:32 Heat of formation + Delta-G solvation = -20.011365 kcal Electronic energy + Delta-G solvation = -24530.610493 eV Core-core repulsion = 21059.693924 eV Total energy + Delta-G solvation = -3470.916570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30358 -39.68241 -38.36206 -37.00099 -34.63308 -33.71030 -33.11168 -30.95266 -30.65173 -28.59365 -26.65682 -25.44611 -24.32004 -23.29481 -22.79183 -21.89139 -21.23102 -19.64101 -19.23414 -19.05725 -17.36764 -17.12408 -16.71804 -16.53205 -16.16554 -15.79321 -15.33757 -15.24697 -15.04147 -14.82728 -14.65682 -14.39372 -14.20183 -13.92898 -13.74720 -13.65517 -13.33762 -13.24981 -13.07993 -12.90622 -12.83308 -12.45444 -12.32516 -12.11805 -12.02594 -11.86859 -11.81215 -11.60787 -11.57691 -11.38869 -10.97900 -10.96669 -9.99687 -9.67661 -9.31401 -9.29139 -8.03864 -5.38511 -0.47767 0.53388 0.99053 1.37702 1.39050 1.43260 1.50691 1.84831 2.10579 2.48721 3.27095 3.30230 3.51342 3.64175 3.77576 3.88823 3.98121 4.13427 4.18606 4.28772 4.31130 4.42097 4.45043 4.48389 4.50121 4.55017 4.69712 4.74250 4.78503 4.85357 4.87656 4.92248 5.04186 5.08499 5.10491 5.14311 5.24453 5.28050 5.34167 5.42419 5.44166 5.51133 5.73895 6.20137 6.37845 7.00126 7.07164 7.82452 8.03661 9.17956 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.002480 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.170605 B =11286.117994 C =12228.026359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.025 4.025 4 C -0.160 4.160 5 C -0.232 4.232 6 S 0.254 5.746 7 C -0.308 4.308 8 C 0.592 3.408 9 O -0.569 6.569 10 N -0.618 5.618 11 C 0.082 3.918 12 C -0.111 4.111 13 C -0.086 4.086 14 H 0.090 0.910 15 C -0.103 4.103 16 C 0.149 3.851 17 N -0.759 5.759 18 C -0.242 4.242 19 H 0.049 0.951 20 C -0.069 4.069 21 N -0.987 5.987 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.296 1.296 25 H -0.247 1.247 26 C 0.110 3.890 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.162 0.838 33 H 0.198 0.802 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.021 0.979 41 H 0.014 0.986 42 H 0.369 0.631 43 H 0.259 0.741 44 H 0.055 0.945 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.198 12.730 -32.806 36.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.113 4.113 3 C -0.042 4.042 4 C -0.190 4.190 5 C -0.369 4.369 6 S 0.524 5.476 7 C -0.428 4.428 8 C 0.382 3.618 9 O -0.451 6.451 10 N -0.351 5.351 11 C -0.041 4.041 12 C -0.149 4.149 13 C -0.106 4.106 14 H 0.108 0.892 15 C -0.141 4.141 16 C 0.023 3.977 17 N -0.405 5.405 18 C -0.373 4.373 19 H 0.067 0.933 20 C -0.260 4.260 21 N -0.637 5.637 22 Si 0.790 3.210 23 H -0.199 1.199 24 H -0.223 1.223 25 H -0.171 1.171 26 C -0.013 4.013 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.180 0.820 33 H 0.215 0.785 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.202 0.798 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.196 13.317 -31.949 36.084 hybrid contribution -0.157 -1.636 0.172 1.652 sum 10.039 11.682 -31.777 35.313 Atomic orbital electron populations 1.21544 0.94276 1.02024 1.01033 1.20390 0.96581 0.91161 1.03148 1.19744 0.95716 0.97418 0.91300 1.20048 1.04526 0.94803 0.99625 1.26012 1.05535 1.01262 1.04125 1.82994 1.58909 1.08331 0.97376 1.24317 1.19989 1.02375 0.96110 1.17031 0.77426 0.83974 0.83349 1.90789 1.48308 1.20396 1.85572 1.48444 1.64981 1.15254 1.06378 1.22445 1.00522 0.81065 1.00070 1.22710 1.00402 1.00549 0.91197 1.22226 1.01154 0.93669 0.93513 0.89182 1.21597 0.98883 1.00400 0.93266 1.20857 0.97158 0.97169 0.82520 1.42701 1.35566 1.56865 1.05362 1.19043 1.08117 1.19957 0.90135 0.93309 1.25656 1.02613 1.01467 0.96309 1.69914 1.43511 1.45653 1.04611 0.85276 0.79592 0.78155 0.77948 1.19924 1.22304 1.17085 1.22331 1.00852 0.98428 0.79671 0.91536 0.91784 0.95074 0.89077 0.91739 0.82027 0.78487 0.89230 0.89381 0.86690 0.88913 0.90945 0.89472 0.96086 0.96799 0.79767 0.93261 0.92662 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.78 71.98 0.70 -2.03 16 2 C -0.07 -1.55 5.50 29.85 0.16 -1.39 16 3 C -0.03 -0.51 5.16 -20.42 -0.11 -0.62 16 4 C -0.16 -2.20 9.96 21.08 0.21 -1.99 16 5 C -0.23 -2.41 10.92 66.81 0.73 -1.68 16 6 S 0.25 3.15 18.43 -56.49 -1.04 2.11 16 7 C -0.31 -6.74 6.38 24.08 0.15 -6.59 16 8 C 0.59 16.79 7.81 86.42 0.68 17.47 16 9 O -0.57 -20.55 13.97 -4.36 -0.06 -20.61 16 10 N -0.62 -14.77 3.33 -816.58 -2.72 -17.48 16 11 C 0.08 1.19 5.17 86.73 0.45 1.64 16 12 C -0.11 -1.42 6.42 31.79 0.20 -1.21 16 13 C -0.09 -1.77 3.08 -9.40 -0.03 -1.80 16 14 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 15 C -0.10 -2.63 4.84 30.60 0.15 -2.49 16 16 C 0.15 5.67 6.11 86.38 0.53 6.20 16 17 N -0.76 -36.10 5.41 -343.45 -1.86 -37.95 16 18 C -0.24 -14.33 10.47 84.03 0.88 -13.45 16 19 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 20 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 21 N -0.99 -64.90 13.97 21.65 0.30 -64.60 16 22 Si 0.96 45.60 27.74 68.60 1.90 47.50 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 25 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 26 C 0.11 2.88 5.56 86.86 0.48 3.37 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.03 0.81 7.59 -2.39 -0.02 0.79 16 30 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 31 H 0.06 1.77 6.33 -2.39 -0.02 1.75 16 32 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.20 0.76 8.06 -2.91 -0.02 0.73 16 34 H 0.09 1.05 7.01 -2.39 -0.02 1.03 16 35 H 0.09 1.04 6.80 -2.39 -0.02 1.03 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.05 8.04 -2.39 -0.02 1.03 16 38 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 39 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.01 0.57 7.46 -2.39 -0.02 0.55 16 42 H 0.37 16.18 5.53 -92.71 -0.51 15.66 16 43 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 44 H 0.05 1.76 7.96 -2.39 -0.02 1.74 16 45 H 0.07 1.81 8.00 -2.39 -0.02 1.80 16 Total: -1.00 -79.74 368.53 2.60 -77.14 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.41 Total: 22.19 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.66 Total: -8.29 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -4.27 Total: -120.04 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.06 Total: -20.61 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.50 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.04 Total: 2.11 kcal Total: -79.74 2.60 -77.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754944403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.125 kcal (2) G-P(sol) polarization free energy of solvation -79.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds