Wall clock time and date at job start Tue Mar 31 2020 13:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47280 * 2 1 4 4 C 1.33813 * 124.52014 * 89.99412 * 3 2 1 5 5 C 1.37472 * 115.10117 * 180.02562 * 4 3 2 6 6 C 1.36656 * 113.29429 * 0.02562 * 5 4 3 7 7 C 1.46583 * 125.45665 * 179.97438 * 6 5 4 8 8 O 1.21700 * 120.00242 * 8.13259 * 7 6 5 9 9 N 1.34777 * 119.99860 * 188.13512 * 7 6 5 10 10 C 1.46501 * 119.99964 * 359.10954 * 9 7 6 11 11 C 1.46498 * 119.99808 * 179.10990 * 9 7 6 12 12 H 1.09002 * 109.47197 * 0.02562 * 11 9 7 13 13 C 1.52995 * 109.47132 * 239.99774 * 11 9 7 14 14 N 1.46495 * 109.47172 * 55.00427 * 13 11 9 15 15 C 1.36940 * 120.00638 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99293 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00553 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99793 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00270 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47073 * 59.99544 * 19 17 15 21 21 H 1.48497 * 109.47410 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46824 * 300.00142 * 19 17 15 23 23 C 1.53006 * 109.47056 * 120.00084 * 11 9 7 24 24 C 1.53004 * 117.49626 * 231.25289 * 23 11 9 25 25 C 1.53002 * 117.49819 * 299.91225 * 23 11 9 26 26 S 1.70615 * 124.52365 * 270.27340 * 3 2 1 27 27 H 1.08994 * 109.47082 * 300.00095 * 1 2 3 28 28 H 1.09002 * 109.46743 * 60.00396 * 1 2 3 29 29 H 1.09002 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47541 * 239.99957 * 2 1 3 31 31 H 1.08997 * 109.47290 * 120.00044 * 2 1 3 32 32 H 1.07997 * 122.45250 * 359.97438 * 4 3 2 33 33 H 1.08002 * 123.35463 * 180.02562 * 5 4 3 34 34 H 1.08995 * 109.46925 * 276.39306 * 10 9 7 35 35 H 1.08996 * 109.46921 * 36.39480 * 10 9 7 36 36 H 1.08997 * 109.46889 * 156.39498 * 10 9 7 37 37 H 1.09005 * 109.47031 * 174.99979 * 13 11 9 38 38 H 1.09002 * 109.47734 * 295.00014 * 13 11 9 39 39 H 0.97007 * 120.00346 * 359.97438 * 14 13 11 40 40 H 0.97007 * 119.99643 * 180.02562 * 18 17 15 41 41 H 1.08993 * 115.55184 * 85.58221 * 23 11 9 42 42 H 1.09003 * 117.49561 * 214.99627 * 24 23 11 43 43 H 1.08995 * 117.50221 * 0.02562 * 24 23 11 44 44 H 1.09007 * 117.49596 * 359.97438 * 25 23 11 45 45 H 1.08999 * 117.49968 * 144.99765 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7367 3.4146 0.8775 6 6 2.8451 3.7238 -0.4491 7 6 3.2983 5.0094 -0.9883 8 8 3.7551 5.8552 -0.2420 9 7 3.2090 5.2546 -2.3105 10 6 2.6771 4.2291 -3.2115 11 6 3.6438 6.5467 -2.8468 12 1 4.0068 7.1744 -2.0329 13 6 2.4644 7.2359 -3.5359 14 7 1.3438 7.3400 -2.5981 15 6 0.1709 7.9250 -2.9948 16 1 0.0722 8.3099 -3.9991 17 6 -0.8910 8.0232 -2.1064 18 7 -0.7708 7.5536 -0.8827 19 14 -2.4912 8.8205 -2.6478 20 1 -3.0542 8.0690 -3.7982 21 1 -3.4594 8.8017 -1.5220 22 1 -2.2318 10.2252 -3.0535 23 6 4.7685 6.3258 -3.8604 24 6 6.0497 7.1432 -3.6832 25 6 6.0456 5.6466 -3.3617 26 16 2.3484 2.3347 -1.4057 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 2.1438 1.7377 2.0964 33 1 2.9814 4.1060 1.6703 34 1 3.4718 3.5326 -3.4785 35 1 1.8728 3.6888 -2.7124 36 1 2.2911 4.7032 -4.1139 37 1 2.7636 8.2337 -3.8567 38 1 2.1587 6.6516 -4.4039 39 1 1.4323 6.9939 -1.6962 40 1 -1.5131 7.6219 -0.2619 41 1 4.4474 6.1079 -4.8789 42 1 6.5715 7.4629 -4.5853 43 1 6.0916 7.8379 -2.8444 44 1 6.0846 5.3574 -2.3114 45 1 6.5646 4.9817 -4.0522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755561738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:20 Heat of formation + Delta-G solvation = 37.470974 kcal Electronic energy + Delta-G solvation = -25597.544049 eV Core-core repulsion = 22129.120101 eV Total energy + Delta-G solvation = -3468.423948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88749 -38.07618 -37.11084 -35.15529 -34.06531 -33.64812 -31.34416 -29.16350 -27.89676 -26.75556 -25.09521 -23.94737 -22.42180 -22.24431 -21.63469 -21.22374 -19.52816 -18.25699 -17.81147 -17.14517 -16.18121 -15.75705 -15.51224 -14.96529 -14.89918 -14.46250 -14.16687 -14.07161 -13.66085 -13.23888 -13.17757 -12.98885 -12.93224 -12.77481 -12.56733 -12.01556 -11.98679 -11.78691 -11.55206 -11.50183 -11.43050 -11.17611 -10.93302 -10.82723 -10.69808 -10.30768 -10.25882 -10.21380 -9.97256 -9.65028 -9.50570 -8.84090 -8.57218 -8.39277 -8.10942 -6.87609 -5.69703 -2.99823 0.74339 1.67453 2.10222 2.61960 3.16094 3.45863 3.50131 3.51701 3.58696 4.04438 4.55693 4.66061 4.74603 4.91518 4.93099 5.04325 5.11040 5.16063 5.26215 5.36468 5.39734 5.54225 5.58120 5.60286 5.66573 5.69597 5.71738 5.75263 5.86100 5.86554 5.96621 6.03460 6.08170 6.16180 6.21971 6.23845 6.35800 6.38334 6.50729 6.57022 6.70496 6.96841 7.68678 7.72471 8.47118 8.51272 9.58576 10.16811 10.52067 11.52085 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008627 B = 0.005368 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.732433 B = 5214.801267 C = 7497.221662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C -0.230 4.230 4 C -0.153 4.153 5 C -0.054 4.054 6 C -0.256 4.256 7 C 0.593 3.407 8 O -0.531 6.531 9 N -0.587 5.587 10 C 0.072 3.928 11 C 0.163 3.837 12 H 0.103 0.897 13 C 0.147 3.853 14 N -0.728 5.728 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.011 4.011 18 N -0.927 5.927 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.159 4.159 24 C -0.170 4.170 25 C -0.172 4.172 26 S 0.225 5.775 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.032 0.968 38 H 0.021 0.979 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.422 -15.467 -3.104 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.348 4.348 4 C -0.183 4.183 5 C -0.087 4.087 6 C -0.376 4.376 7 C 0.381 3.619 8 O -0.410 6.410 9 N -0.318 5.318 10 C -0.074 4.074 11 C 0.060 3.940 12 H 0.121 0.879 13 C 0.019 3.981 14 N -0.373 5.373 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.207 4.207 18 N -0.575 5.575 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.179 4.179 24 C -0.207 4.207 25 C -0.210 4.210 26 S 0.494 5.506 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.407 -15.254 -4.325 18.965 hybrid contribution -1.055 0.562 1.627 2.019 sum 9.352 -14.692 -2.698 17.624 Atomic orbital electron populations 1.21805 0.94243 1.01769 1.02913 1.20072 0.96240 0.89873 1.02839 1.24879 1.07125 1.02083 1.00743 1.19840 1.05006 0.94187 0.99254 1.20674 0.96675 0.96096 0.95271 1.24530 1.15920 0.99163 0.97961 1.16931 0.78069 0.85071 0.81813 1.90806 1.46465 1.46178 1.57545 1.47410 1.62522 1.15827 1.06045 1.21881 0.98435 0.91154 0.95895 1.20976 0.93396 0.83674 0.95916 0.87882 1.20951 0.87447 0.96807 0.92938 1.42298 1.10428 1.71831 1.12714 1.19142 0.90282 1.30992 0.96954 0.91317 1.24744 0.98340 1.01718 0.95945 1.69686 1.31779 1.51189 1.04890 0.86300 0.83665 0.79237 0.77142 1.21353 1.21737 1.21290 1.22599 0.89340 1.05792 1.00164 1.22971 1.00188 0.94269 1.03290 1.22840 1.00769 0.95301 1.02059 1.83457 1.60177 1.01127 1.05824 0.92156 0.92231 0.92210 0.91034 0.90435 0.84754 0.83307 0.92258 0.90914 0.88814 0.95071 0.96142 0.77910 0.93513 0.87485 0.88789 0.88565 0.88980 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.03 16 2 C -0.05 -0.48 6.36 -27.88 -0.18 -0.66 16 3 C -0.23 -2.84 5.53 -35.86 -0.20 -3.04 16 4 C -0.15 -2.04 9.99 -41.41 -0.41 -2.45 16 5 C -0.05 -0.87 10.02 -40.43 -0.41 -1.27 16 6 C -0.26 -4.34 6.25 -36.79 -0.23 -4.57 16 7 C 0.59 11.56 7.34 -12.90 -0.09 11.47 16 8 O -0.53 -12.07 16.18 5.19 0.08 -11.99 16 9 N -0.59 -10.16 2.12 -175.52 -0.37 -10.53 16 10 C 0.07 1.02 8.27 59.85 0.50 1.52 16 11 C 0.16 2.86 2.37 -67.93 -0.16 2.70 16 12 H 0.10 2.08 6.65 -51.93 -0.35 1.73 16 13 C 0.15 2.99 5.51 -4.05 -0.02 2.97 16 14 N -0.73 -19.04 5.43 -59.91 -0.33 -19.36 16 15 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 19 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 C -0.16 -2.13 4.83 -90.61 -0.44 -2.57 16 24 C -0.17 -2.04 10.18 -26.69 -0.27 -2.31 16 25 C -0.17 -2.09 10.13 -26.69 -0.27 -2.36 16 26 S 0.22 2.93 17.84 -107.50 -1.92 1.01 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 35 H 0.07 1.09 4.48 -22.31 -0.10 0.99 16 36 H 0.09 1.31 6.54 -51.93 -0.34 0.97 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.40 6.87 -51.93 -0.36 0.05 16 39 H 0.39 11.06 7.06 -40.82 -0.29 10.77 16 40 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.11 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.10 1.24 8.05 -51.93 -0.42 0.82 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -33.84 378.82 -10.06 -43.90 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.87 Total: 10.89 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.07 Total: -9.09 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.03 Total: -58.20 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.92 Total: 1.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.84 -10.06 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755561738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.375 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds