Wall clock time and date at job start Tue Mar 31 2020 13:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47280 * 2 1 4 4 C 1.33813 * 124.52014 * 89.99412 * 3 2 1 5 5 C 1.37472 * 115.10117 * 180.02562 * 4 3 2 6 6 C 1.36656 * 113.29429 * 0.02562 * 5 4 3 7 7 C 1.46583 * 125.45665 * 179.97438 * 6 5 4 8 8 O 1.21700 * 120.00242 * 8.13259 * 7 6 5 9 9 N 1.34777 * 119.99860 * 188.13512 * 7 6 5 10 10 C 1.46501 * 119.99964 * 359.10954 * 9 7 6 11 11 C 1.46498 * 119.99808 * 179.10990 * 9 7 6 12 12 H 1.09002 * 109.47197 * 0.02562 * 11 9 7 13 13 C 1.52995 * 109.47132 * 239.99774 * 11 9 7 14 14 N 1.46495 * 109.47172 * 55.00427 * 13 11 9 15 15 C 1.36940 * 120.00638 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99293 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00553 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99793 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00270 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47073 * 59.99544 * 19 17 15 21 21 H 1.48497 * 109.47410 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46824 * 300.00142 * 19 17 15 23 23 C 1.53006 * 109.47056 * 120.00084 * 11 9 7 24 24 C 1.53004 * 117.49626 * 231.25289 * 23 11 9 25 25 C 1.53002 * 117.49819 * 299.91225 * 23 11 9 26 26 S 1.70615 * 124.52365 * 270.27340 * 3 2 1 27 27 H 1.08994 * 109.47082 * 300.00095 * 1 2 3 28 28 H 1.09002 * 109.46743 * 60.00396 * 1 2 3 29 29 H 1.09002 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47541 * 239.99957 * 2 1 3 31 31 H 1.08997 * 109.47290 * 120.00044 * 2 1 3 32 32 H 1.07997 * 122.45250 * 359.97438 * 4 3 2 33 33 H 1.08002 * 123.35463 * 180.02562 * 5 4 3 34 34 H 1.08995 * 109.46925 * 276.39306 * 10 9 7 35 35 H 1.08996 * 109.46921 * 36.39480 * 10 9 7 36 36 H 1.08997 * 109.46889 * 156.39498 * 10 9 7 37 37 H 1.09005 * 109.47031 * 174.99979 * 13 11 9 38 38 H 1.09002 * 109.47734 * 295.00014 * 13 11 9 39 39 H 0.97007 * 120.00346 * 359.97438 * 14 13 11 40 40 H 0.97007 * 119.99643 * 180.02562 * 18 17 15 41 41 H 1.08993 * 115.55184 * 85.58221 * 23 11 9 42 42 H 1.09003 * 117.49561 * 214.99627 * 24 23 11 43 43 H 1.08995 * 117.50221 * 0.02562 * 24 23 11 44 44 H 1.09007 * 117.49596 * 359.97438 * 25 23 11 45 45 H 1.08999 * 117.49968 * 144.99765 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7367 3.4146 0.8775 6 6 2.8451 3.7238 -0.4491 7 6 3.2983 5.0094 -0.9883 8 8 3.7551 5.8552 -0.2420 9 7 3.2090 5.2546 -2.3105 10 6 2.6771 4.2291 -3.2115 11 6 3.6438 6.5467 -2.8468 12 1 4.0068 7.1744 -2.0329 13 6 2.4644 7.2359 -3.5359 14 7 1.3438 7.3400 -2.5981 15 6 0.1709 7.9250 -2.9948 16 1 0.0722 8.3099 -3.9991 17 6 -0.8910 8.0232 -2.1064 18 7 -0.7708 7.5536 -0.8827 19 14 -2.4912 8.8205 -2.6478 20 1 -3.0542 8.0690 -3.7982 21 1 -3.4594 8.8017 -1.5220 22 1 -2.2318 10.2252 -3.0535 23 6 4.7685 6.3258 -3.8604 24 6 6.0497 7.1432 -3.6832 25 6 6.0456 5.6466 -3.3617 26 16 2.3484 2.3347 -1.4057 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 2.1438 1.7377 2.0964 33 1 2.9814 4.1060 1.6703 34 1 3.4718 3.5326 -3.4785 35 1 1.8728 3.6888 -2.7124 36 1 2.2911 4.7032 -4.1139 37 1 2.7636 8.2337 -3.8567 38 1 2.1587 6.6516 -4.4039 39 1 1.4323 6.9939 -1.6962 40 1 -1.5131 7.6219 -0.2619 41 1 4.4474 6.1079 -4.8789 42 1 6.5715 7.4629 -4.5853 43 1 6.0916 7.8379 -2.8444 44 1 6.0846 5.3574 -2.3114 45 1 6.5646 4.9817 -4.0522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755561738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:20 Heat of formation + Delta-G solvation = 17.425103 kcal Electronic energy + Delta-G solvation = -25598.413303 eV Core-core repulsion = 22129.120101 eV Total energy + Delta-G solvation = -3469.293202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27938 -39.22037 -38.33260 -36.65750 -35.79217 -34.61095 -33.27845 -30.65257 -29.20675 -28.05499 -26.41086 -25.65661 -23.58515 -23.17995 -23.05492 -22.44886 -20.83077 -19.47974 -19.19898 -19.06772 -17.49157 -16.91803 -16.88261 -16.67746 -16.03824 -15.89534 -15.48098 -15.11184 -15.02132 -14.83529 -14.64614 -14.32960 -14.19077 -13.98981 -13.74293 -13.51196 -13.18785 -13.08706 -12.81352 -12.77145 -12.64720 -12.41854 -12.37817 -12.21326 -12.15494 -11.97706 -11.81931 -11.41585 -11.32312 -11.16221 -10.97138 -10.85041 -9.87942 -9.50571 -9.28621 -9.01916 -7.93477 -5.24608 -0.44249 0.54138 1.01014 1.43328 1.44513 1.48753 1.54826 1.85162 2.22607 2.54600 2.99225 3.38690 3.42781 3.67523 3.79601 3.94265 4.04143 4.08696 4.14892 4.18169 4.32119 4.37215 4.41143 4.43236 4.50309 4.53331 4.58964 4.72456 4.78368 4.82385 4.91028 4.93066 5.02303 5.03488 5.06774 5.15895 5.25101 5.27401 5.30349 5.36016 5.46157 5.48114 5.55539 6.24718 6.31710 7.08037 7.31400 8.06816 8.30457 9.29388 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008627 B = 0.005368 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.732433 B = 5214.801267 C = 7497.221662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C -0.219 4.219 4 C -0.166 4.166 5 C -0.065 4.065 6 C -0.305 4.305 7 C 0.581 3.419 8 O -0.585 6.585 9 N -0.585 5.585 10 C 0.066 3.934 11 C 0.170 3.830 12 H 0.065 0.935 13 C 0.146 3.854 14 N -0.743 5.743 15 C -0.244 4.244 16 H 0.081 0.919 17 C -0.077 4.077 18 N -0.971 5.971 19 Si 0.976 3.024 20 H -0.272 1.272 21 H -0.299 1.299 22 H -0.278 1.278 23 C -0.162 4.162 24 C -0.165 4.165 25 C -0.161 4.161 26 S 0.280 5.720 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.033 0.967 38 H 0.043 0.957 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.415 -17.810 -5.863 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.338 4.338 4 C -0.195 4.195 5 C -0.099 4.099 6 C -0.425 4.425 7 C 0.371 3.629 8 O -0.468 6.468 9 N -0.314 5.314 10 C -0.078 4.078 11 C 0.067 3.933 12 H 0.083 0.917 13 C 0.019 3.981 14 N -0.386 5.386 15 C -0.376 4.376 16 H 0.099 0.901 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.805 3.195 20 H -0.198 1.198 21 H -0.226 1.226 22 H -0.204 1.204 23 C -0.182 4.182 24 C -0.202 4.202 25 C -0.198 4.198 26 S 0.550 5.450 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.174 0.826 33 H 0.150 0.850 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.201 0.799 40 H 0.057 0.943 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.423 -17.605 -7.176 21.681 hybrid contribution -1.021 1.239 2.464 2.941 sum 9.402 -16.366 -4.712 19.454 Atomic orbital electron populations 1.21821 0.94090 1.03044 1.01849 1.20252 0.96169 0.87759 1.04848 1.25403 1.04868 1.03406 1.00108 1.19964 1.05574 0.93154 1.00853 1.20825 0.96938 0.97239 0.94909 1.24524 1.18589 1.00102 0.99304 1.17413 0.77559 0.85656 0.82226 1.90750 1.49076 1.48145 1.58845 1.47500 1.61879 1.16172 1.05874 1.22129 0.99493 0.91054 0.95154 1.20774 0.93662 0.83395 0.95512 0.91685 1.21150 0.86793 0.97510 0.92657 1.42535 1.11519 1.71633 1.12900 1.19623 0.90944 1.29758 0.97260 0.90080 1.25630 1.02092 1.03123 0.96031 1.69894 1.32510 1.53437 1.06295 0.85176 0.79134 0.78530 0.76682 1.19768 1.22570 1.20449 1.22480 0.88332 1.07535 0.99827 1.23066 0.99239 0.94028 1.03878 1.22842 0.99746 0.95925 1.01286 1.83007 1.58695 0.98379 1.04894 0.93277 0.93287 0.89821 0.88989 0.88499 0.82643 0.84963 0.88635 0.91595 0.88227 0.94947 0.93898 0.79888 0.94296 0.84940 0.85822 0.90373 0.91531 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.89 71.98 0.71 -1.69 16 2 C -0.05 -0.79 6.36 29.85 0.19 -0.60 16 3 C -0.22 -5.03 5.53 24.68 0.14 -4.89 16 4 C -0.17 -4.40 9.99 21.08 0.21 -4.19 16 5 C -0.06 -2.20 10.02 21.72 0.22 -1.98 16 6 C -0.31 -10.83 6.25 24.08 0.15 -10.68 16 7 C 0.58 24.16 7.34 86.42 0.63 24.80 16 8 O -0.59 -29.20 16.18 -4.35 -0.07 -29.27 16 9 N -0.58 -20.71 2.12 -827.43 -1.76 -22.47 16 10 C 0.07 1.78 8.27 127.77 1.06 2.84 16 11 C 0.17 6.08 2.37 44.99 0.11 6.19 16 12 H 0.06 2.83 6.65 -2.39 -0.02 2.81 16 13 C 0.15 5.94 5.51 86.38 0.48 6.41 16 14 N -0.74 -39.83 5.43 -343.46 -1.87 -41.70 16 15 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 17 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 18 N -0.97 -62.88 13.06 21.65 0.28 -62.60 16 19 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 C -0.16 -4.09 4.83 -10.79 -0.05 -4.15 16 24 C -0.16 -3.73 10.18 30.62 0.31 -3.42 16 25 C -0.16 -3.65 10.13 30.62 0.31 -3.34 16 26 S 0.28 6.94 17.84 -56.49 -1.01 5.94 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 34 H 0.10 1.89 7.83 -2.39 -0.02 1.87 16 35 H 0.07 1.91 4.48 -21.22 -0.10 1.81 16 36 H 0.10 2.57 6.54 -2.39 -0.02 2.56 16 37 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.04 1.58 6.87 -2.39 -0.02 1.57 16 39 H 0.37 22.22 7.06 -92.70 -0.65 21.56 16 40 H 0.25 15.66 8.31 -92.70 -0.77 14.89 16 41 H 0.13 2.72 8.11 -2.39 -0.02 2.70 16 42 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 2.06 8.05 -2.39 -0.02 2.04 16 44 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -77.98 378.82 3.63 -74.35 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: 0.25 Total: 38.34 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 5.77 Total: -11.94 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -3.34 Total: -126.76 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.07 Total: -29.27 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -1.01 Total: 5.94 kcal Total: -77.98 3.63 -74.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755561738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.779 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds