Wall clock time and date at job start Tue Mar 31 2020 13:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47198 * 2 1 4 4 C 1.33820 * 124.51872 * 89.99852 * 3 2 1 5 5 C 1.37477 * 115.09655 * 180.02562 * 4 3 2 6 6 C 1.36645 * 113.29987 * 359.97438 * 5 4 3 7 7 C 1.46575 * 125.46063 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00046 * 6.82882 * 7 6 5 9 9 N 1.34777 * 120.00400 * 186.82557 * 7 6 5 10 10 C 1.46501 * 119.99795 * 6.07239 * 9 7 6 11 11 C 1.46498 * 120.00390 * 186.06884 * 9 7 6 12 12 H 1.09001 * 109.46692 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.46984 * 120.00304 * 11 9 7 14 14 N 1.46504 * 109.47252 * 304.99687 * 13 11 9 15 15 C 1.36931 * 120.00342 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99809 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00357 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99745 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00309 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47178 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47421 * 120.00352 * 19 17 15 22 22 H 1.48503 * 109.47205 * 240.00355 * 19 17 15 23 23 C 1.52997 * 109.47358 * 240.00255 * 11 9 7 24 24 C 1.53002 * 117.50053 * 128.74428 * 23 11 9 25 25 C 1.53002 * 117.49674 * 60.08484 * 23 11 9 26 26 S 1.70615 * 124.52334 * 270.27135 * 3 2 1 27 27 H 1.08998 * 109.47277 * 60.00054 * 1 2 3 28 28 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46996 * 299.99789 * 1 2 3 30 30 H 1.09000 * 109.46996 * 240.00211 * 2 1 3 31 31 H 1.08998 * 109.47277 * 119.99946 * 2 1 3 32 32 H 1.07996 * 122.45434 * 359.97438 * 4 3 2 33 33 H 1.08003 * 123.34757 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47250 * 275.96072 * 10 9 7 35 35 H 1.09004 * 109.47209 * 35.95318 * 10 9 7 36 36 H 1.08994 * 109.47424 * 155.95446 * 10 9 7 37 37 H 1.09007 * 109.46665 * 185.00539 * 13 11 9 38 38 H 1.08996 * 109.47211 * 65.00254 * 13 11 9 39 39 H 0.97005 * 119.99440 * 0.02562 * 14 13 11 40 40 H 0.97007 * 119.99903 * 180.02562 * 18 17 15 41 41 H 1.08999 * 115.55201 * 274.41835 * 23 11 9 42 42 H 1.08997 * 117.49802 * 0.02562 * 24 23 11 43 43 H 1.09001 * 117.49472 * 145.02153 * 24 23 11 44 44 H 1.09006 * 117.49634 * 214.97628 * 25 23 11 45 45 H 1.09000 * 117.50104 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7367 3.4146 0.8775 6 6 2.8461 3.7236 -0.4490 7 6 3.2995 5.0090 -0.9882 8 8 3.7336 5.8641 -0.2389 9 7 3.2357 5.2440 -2.3138 10 6 2.5922 4.2710 -3.2000 11 6 3.8097 6.4724 -2.8685 12 1 4.2412 7.0674 -2.0636 13 6 4.9014 6.1141 -3.8789 14 7 5.8913 5.2433 -3.2402 15 6 6.9678 4.7906 -3.9552 16 1 7.0873 5.0759 -4.9899 17 6 7.9055 3.9651 -3.3502 18 7 7.7596 3.6171 -2.0892 19 14 9.3744 3.3482 -4.3254 20 1 9.3069 3.8787 -5.7108 21 1 10.6281 3.8110 -3.6781 22 1 9.3555 1.8637 -4.3629 23 6 2.7126 7.2779 -3.5672 24 6 2.5682 8.7529 -3.1871 25 6 1.5240 7.7359 -2.7196 26 16 2.3484 2.3347 -1.4057 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1439 1.7377 2.0965 33 1 2.9815 4.1060 1.6704 34 1 3.3068 3.4912 -3.4634 35 1 1.7385 3.8242 -2.6903 36 1 2.2524 4.7734 -4.1056 37 1 5.3889 7.0255 -4.2253 38 1 4.4551 5.5957 -4.7274 39 1 5.7838 4.9868 -2.3108 40 1 8.4151 3.0405 -1.6662 41 1 2.5157 7.0037 -4.6036 42 1 3.2552 9.1495 -2.4395 43 1 2.2760 9.4489 -3.9734 44 1 0.5452 7.7634 -3.1986 45 1 1.5235 7.4630 -1.6643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755561739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:24 Heat of formation + Delta-G solvation = 35.564850 kcal Electronic energy + Delta-G solvation = -25597.438011 eV Core-core repulsion = 22128.931407 eV Total energy + Delta-G solvation = -3468.506604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87909 -38.06576 -37.10589 -35.14174 -34.05628 -33.65879 -31.33791 -29.15924 -27.90596 -26.72036 -25.09406 -23.95976 -22.42411 -22.24513 -21.63244 -21.21249 -19.51589 -18.25164 -17.78046 -17.14356 -16.19712 -15.74495 -15.36609 -15.02702 -14.95227 -14.41869 -14.17798 -13.95982 -13.74520 -13.24182 -13.08204 -12.97469 -12.88425 -12.74482 -12.68930 -12.05587 -11.96015 -11.78365 -11.56681 -11.49810 -11.42257 -11.18718 -10.93564 -10.84329 -10.72230 -10.31018 -10.24644 -10.18477 -9.94022 -9.65941 -9.51781 -8.85337 -8.54821 -8.35722 -8.10091 -6.87751 -5.70214 -3.00200 0.76507 1.71032 2.15127 2.61662 3.18054 3.45207 3.50379 3.53115 3.59172 4.03621 4.55616 4.65879 4.74613 4.91300 4.94685 5.04408 5.09483 5.13312 5.24162 5.35726 5.38886 5.54603 5.59946 5.62580 5.66105 5.69579 5.72309 5.75998 5.84023 5.89401 5.98443 6.00193 6.04346 6.16353 6.22301 6.24579 6.36418 6.37963 6.48903 6.57704 6.72446 6.97655 7.69398 7.73514 8.46536 8.51341 9.58166 10.16225 10.51445 11.51733 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.005282 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.091491 B = 5300.131953 C = 7487.427779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C -0.228 4.228 4 C -0.154 4.154 5 C -0.059 4.059 6 C -0.256 4.256 7 C 0.594 3.406 8 O -0.534 6.534 9 N -0.588 5.588 10 C 0.068 3.932 11 C 0.164 3.836 12 H 0.102 0.898 13 C 0.148 3.852 14 N -0.728 5.728 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.927 5.927 19 Si 0.904 3.096 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.161 4.161 24 C -0.169 4.169 25 C -0.172 4.172 26 S 0.235 5.765 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.031 0.969 38 H 0.021 0.979 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.820 -2.101 0.943 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.346 4.346 4 C -0.184 4.184 5 C -0.092 4.092 6 C -0.376 4.376 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.319 5.319 10 C -0.077 4.077 11 C 0.061 3.939 12 H 0.120 0.880 13 C 0.019 3.981 14 N -0.373 5.373 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.575 5.575 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.180 4.180 24 C -0.207 4.207 25 C -0.209 4.209 26 S 0.505 5.495 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.573 -2.001 -0.349 18.684 hybrid contribution 1.072 -0.385 1.370 1.781 sum -17.501 -2.386 1.020 17.693 Atomic orbital electron populations 1.21785 0.94453 1.01780 1.02396 1.20088 0.95963 0.89987 1.03252 1.24776 1.07243 1.02122 1.00497 1.19823 1.05219 0.94163 0.99208 1.20637 0.97051 0.96338 0.95185 1.24539 1.15867 0.99235 0.97955 1.16909 0.77824 0.85162 0.81871 1.90796 1.46947 1.45778 1.57716 1.47405 1.57394 1.21273 1.05836 1.21862 0.97522 0.93129 0.95232 1.20973 0.91573 0.84263 0.97082 0.87955 1.20958 0.89270 0.94453 0.93420 1.42303 1.24839 1.57257 1.12889 1.19229 0.99780 1.23471 0.94690 0.91202 1.24742 0.99149 1.00785 0.96110 1.69706 1.36892 1.40192 1.10755 0.86160 0.83029 0.78278 0.78966 1.20596 1.21910 1.21949 1.22583 0.98938 0.96749 0.99743 1.22965 1.02683 0.91548 1.03483 1.22840 0.93582 1.03981 1.00487 1.83525 1.58801 1.01461 1.05728 0.92469 0.92195 0.92370 0.90788 0.90298 0.84772 0.83442 0.90891 0.91334 0.89539 0.95115 0.96103 0.78009 0.93610 0.87519 0.88555 0.88811 0.89140 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.53 6.36 -27.88 -0.18 -0.70 16 3 C -0.23 -2.90 5.53 -35.86 -0.20 -3.10 16 4 C -0.15 -2.06 10.00 -41.41 -0.41 -2.47 16 5 C -0.06 -0.93 10.02 -40.43 -0.41 -1.34 16 6 C -0.26 -4.39 6.21 -36.80 -0.23 -4.61 16 7 C 0.59 11.58 7.33 -12.90 -0.09 11.49 16 8 O -0.53 -12.05 16.19 5.19 0.08 -11.97 16 9 N -0.59 -10.16 2.12 -175.52 -0.37 -10.53 16 10 C 0.07 0.96 7.95 59.85 0.48 1.43 16 11 C 0.16 2.87 2.37 -67.93 -0.16 2.71 16 12 H 0.10 2.07 6.67 -51.93 -0.35 1.72 16 13 C 0.15 3.00 5.54 -4.04 -0.02 2.98 16 14 N -0.73 -18.96 5.43 -59.91 -0.33 -19.29 16 15 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 19 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 23 C -0.16 -2.15 4.38 -90.62 -0.40 -2.55 16 24 C -0.17 -2.05 10.18 -26.69 -0.27 -2.32 16 25 C -0.17 -2.10 10.13 -26.69 -0.27 -2.37 16 26 S 0.23 3.25 17.83 -107.50 -1.92 1.33 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 34 H 0.07 1.16 7.50 -51.93 -0.39 0.77 16 35 H 0.07 0.84 5.11 -27.36 -0.14 0.70 16 36 H 0.09 1.03 7.18 -51.93 -0.37 0.65 16 37 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 39 H 0.39 10.98 7.06 -40.82 -0.29 10.70 16 40 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.11 1.29 7.96 -51.93 -0.41 0.87 16 42 H 0.10 1.25 8.05 -51.93 -0.42 0.83 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -33.82 379.81 -10.12 -43.94 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.97 Total: 10.36 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.04 Total: -9.06 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.03 Total: -58.05 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.92 Total: 1.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.82 -10.12 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755561739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.505 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds