Wall clock time and date at job start Tue Mar 31 2020 13:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47198 * 2 1 4 4 C 1.33820 * 124.51872 * 89.99852 * 3 2 1 5 5 C 1.37477 * 115.09655 * 180.02562 * 4 3 2 6 6 C 1.36645 * 113.29987 * 359.97438 * 5 4 3 7 7 C 1.46575 * 125.46063 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00046 * 6.82882 * 7 6 5 9 9 N 1.34777 * 120.00400 * 186.82557 * 7 6 5 10 10 C 1.46501 * 119.99795 * 6.07239 * 9 7 6 11 11 C 1.46498 * 120.00390 * 186.06884 * 9 7 6 12 12 H 1.09001 * 109.46692 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.46984 * 120.00304 * 11 9 7 14 14 N 1.46504 * 109.47252 * 304.99687 * 13 11 9 15 15 C 1.36931 * 120.00342 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99809 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00357 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99745 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00309 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47178 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47421 * 120.00352 * 19 17 15 22 22 H 1.48503 * 109.47205 * 240.00355 * 19 17 15 23 23 C 1.52997 * 109.47358 * 240.00255 * 11 9 7 24 24 C 1.53002 * 117.50053 * 128.74428 * 23 11 9 25 25 C 1.53002 * 117.49674 * 60.08484 * 23 11 9 26 26 S 1.70615 * 124.52334 * 270.27135 * 3 2 1 27 27 H 1.08998 * 109.47277 * 60.00054 * 1 2 3 28 28 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46996 * 299.99789 * 1 2 3 30 30 H 1.09000 * 109.46996 * 240.00211 * 2 1 3 31 31 H 1.08998 * 109.47277 * 119.99946 * 2 1 3 32 32 H 1.07996 * 122.45434 * 359.97438 * 4 3 2 33 33 H 1.08003 * 123.34757 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47250 * 275.96072 * 10 9 7 35 35 H 1.09004 * 109.47209 * 35.95318 * 10 9 7 36 36 H 1.08994 * 109.47424 * 155.95446 * 10 9 7 37 37 H 1.09007 * 109.46665 * 185.00539 * 13 11 9 38 38 H 1.08996 * 109.47211 * 65.00254 * 13 11 9 39 39 H 0.97005 * 119.99440 * 0.02562 * 14 13 11 40 40 H 0.97007 * 119.99903 * 180.02562 * 18 17 15 41 41 H 1.08999 * 115.55201 * 274.41835 * 23 11 9 42 42 H 1.08997 * 117.49802 * 0.02562 * 24 23 11 43 43 H 1.09001 * 117.49472 * 145.02153 * 24 23 11 44 44 H 1.09006 * 117.49634 * 214.97628 * 25 23 11 45 45 H 1.09000 * 117.50104 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7367 3.4146 0.8775 6 6 2.8461 3.7236 -0.4490 7 6 3.2995 5.0090 -0.9882 8 8 3.7336 5.8641 -0.2389 9 7 3.2357 5.2440 -2.3138 10 6 2.5922 4.2710 -3.2000 11 6 3.8097 6.4724 -2.8685 12 1 4.2412 7.0674 -2.0636 13 6 4.9014 6.1141 -3.8789 14 7 5.8913 5.2433 -3.2402 15 6 6.9678 4.7906 -3.9552 16 1 7.0873 5.0759 -4.9899 17 6 7.9055 3.9651 -3.3502 18 7 7.7596 3.6171 -2.0892 19 14 9.3744 3.3482 -4.3254 20 1 9.3069 3.8787 -5.7108 21 1 10.6281 3.8110 -3.6781 22 1 9.3555 1.8637 -4.3629 23 6 2.7126 7.2779 -3.5672 24 6 2.5682 8.7529 -3.1871 25 6 1.5240 7.7359 -2.7196 26 16 2.3484 2.3347 -1.4057 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1439 1.7377 2.0965 33 1 2.9815 4.1060 1.6704 34 1 3.3068 3.4912 -3.4634 35 1 1.7385 3.8242 -2.6903 36 1 2.2524 4.7734 -4.1056 37 1 5.3889 7.0255 -4.2253 38 1 4.4551 5.5957 -4.7274 39 1 5.7838 4.9868 -2.3108 40 1 8.4151 3.0405 -1.6662 41 1 2.5157 7.0037 -4.6036 42 1 3.2552 9.1495 -2.4395 43 1 2.2760 9.4489 -3.9734 44 1 0.5452 7.7634 -3.1986 45 1 1.5235 7.4630 -1.6643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755561739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:23 Heat of formation + Delta-G solvation = 15.717096 kcal Electronic energy + Delta-G solvation = -25598.298674 eV Core-core repulsion = 22128.931407 eV Total energy + Delta-G solvation = -3469.367267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27463 -39.22260 -38.33458 -36.65123 -35.77775 -34.60941 -33.26876 -30.64077 -29.21250 -28.01243 -26.40635 -25.65576 -23.59095 -23.18411 -23.06070 -22.44513 -20.82687 -19.48134 -19.19676 -19.04383 -17.51020 -16.96066 -16.73081 -16.68178 -16.15313 -15.85122 -15.40995 -15.13194 -15.02101 -14.80966 -14.54595 -14.42083 -14.13310 -13.97257 -13.78245 -13.48035 -13.19178 -13.08298 -12.86272 -12.78096 -12.62176 -12.42668 -12.36075 -12.22690 -12.05297 -11.97411 -11.82008 -11.41881 -11.32349 -11.15757 -11.00905 -10.86555 -9.86875 -9.50287 -9.32284 -9.01499 -7.93290 -5.24156 -0.43934 0.54062 1.02801 1.42307 1.45298 1.47049 1.57055 1.87386 2.21453 2.54857 2.98140 3.39482 3.43078 3.68628 3.78920 3.94106 4.04344 4.10025 4.15227 4.18317 4.30862 4.37717 4.43627 4.44851 4.50586 4.53189 4.60230 4.76815 4.78371 4.82556 4.86123 4.94525 5.02153 5.05481 5.08450 5.15715 5.24850 5.27408 5.29624 5.36772 5.47200 5.48403 5.56142 6.25266 6.31845 7.07301 7.31941 8.06809 8.30650 9.30005 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.005282 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.091491 B = 5300.131953 C = 7487.427779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.214 4.214 4 C -0.165 4.165 5 C -0.063 4.063 6 C -0.303 4.303 7 C 0.583 3.417 8 O -0.584 6.584 9 N -0.585 5.585 10 C 0.065 3.935 11 C 0.170 3.830 12 H 0.065 0.935 13 C 0.147 3.853 14 N -0.743 5.743 15 C -0.241 4.241 16 H 0.081 0.919 17 C -0.076 4.076 18 N -0.971 5.971 19 Si 0.974 3.026 20 H -0.261 1.261 21 H -0.298 1.298 22 H -0.292 1.292 23 C -0.164 4.164 24 C -0.164 4.164 25 C -0.161 4.161 26 S 0.264 5.736 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.033 0.967 38 H 0.042 0.958 39 H 0.369 0.631 40 H 0.248 0.752 41 H 0.133 0.867 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.733 -3.293 -1.220 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.096 4.096 3 C -0.334 4.334 4 C -0.194 4.194 5 C -0.097 4.097 6 C -0.423 4.423 7 C 0.373 3.627 8 O -0.467 6.467 9 N -0.315 5.315 10 C -0.079 4.079 11 C 0.067 3.933 12 H 0.083 0.917 13 C 0.020 3.980 14 N -0.385 5.385 15 C -0.373 4.373 16 H 0.099 0.901 17 C -0.268 4.268 18 N -0.621 5.621 19 Si 0.803 3.197 20 H -0.185 1.185 21 H -0.226 1.226 22 H -0.219 1.219 23 C -0.183 4.183 24 C -0.201 4.201 25 C -0.198 4.198 26 S 0.534 5.466 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.201 0.799 40 H 0.057 0.943 41 H 0.151 0.849 42 H 0.097 0.903 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.525 -3.173 -2.589 20.929 hybrid contribution 1.616 -0.027 2.055 2.615 sum -18.908 -3.200 -0.534 19.185 Atomic orbital electron populations 1.21775 0.92823 1.03113 1.02379 1.20274 0.97255 0.87746 1.04283 1.25273 1.05063 1.03349 0.99700 1.19993 1.05475 0.93146 1.00769 1.20840 0.96672 0.97429 0.94759 1.24528 1.18693 0.99852 0.99252 1.17382 0.77303 0.85644 0.82390 1.90741 1.49446 1.47556 1.58998 1.47490 1.56713 1.21669 1.05606 1.22065 0.97431 0.92418 0.96025 1.20777 0.92480 0.84608 0.95435 0.91709 1.21147 0.88988 0.93544 0.94331 1.42531 1.25713 1.58028 1.12257 1.19683 1.00061 1.22376 0.95149 0.90095 1.25601 1.02325 1.01774 0.97088 1.69901 1.37972 1.41518 1.12747 0.85058 0.78917 0.77380 0.78298 1.18544 1.22571 1.21941 1.22476 0.98169 0.97104 1.00569 1.23059 1.02042 0.91298 1.03702 1.22833 0.94630 1.03284 0.99046 1.83222 1.57969 0.99809 1.05579 0.92542 0.90220 0.92395 0.90072 0.88976 0.82296 0.84328 0.92654 0.89383 0.86631 0.94944 0.94002 0.79943 0.94292 0.84890 0.90344 0.85813 0.86069 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.06 -0.95 6.36 29.85 0.19 -0.76 16 3 C -0.21 -5.15 5.53 24.68 0.14 -5.02 16 4 C -0.16 -4.31 10.00 21.09 0.21 -4.10 16 5 C -0.06 -2.07 10.02 21.72 0.22 -1.85 16 6 C -0.30 -10.86 6.21 24.07 0.15 -10.71 16 7 C 0.58 24.18 7.33 86.42 0.63 24.81 16 8 O -0.58 -28.78 16.19 -4.36 -0.07 -28.85 16 9 N -0.59 -20.77 2.12 -827.42 -1.76 -22.53 16 10 C 0.06 1.77 7.95 127.77 1.02 2.78 16 11 C 0.17 6.09 2.37 44.99 0.11 6.20 16 12 H 0.06 2.81 6.67 -2.39 -0.02 2.80 16 13 C 0.15 5.97 5.54 86.38 0.48 6.45 16 14 N -0.74 -39.55 5.43 -343.45 -1.87 -41.42 16 15 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 16 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 17 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 18 N -0.97 -62.47 13.06 21.65 0.28 -62.19 16 19 Si 0.97 47.16 29.55 68.60 2.03 49.18 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 23 C -0.16 -4.14 4.38 -10.79 -0.05 -4.19 16 24 C -0.16 -3.72 10.18 30.62 0.31 -3.41 16 25 C -0.16 -3.69 10.13 30.62 0.31 -3.38 16 26 S 0.26 7.15 17.83 -56.49 -1.01 6.14 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 33 H 0.14 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.05 1.74 7.50 -2.39 -0.02 1.72 16 35 H 0.09 2.06 5.11 -18.01 -0.09 1.97 16 36 H 0.12 2.44 7.18 -2.39 -0.02 2.43 16 37 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 39 H 0.37 22.01 7.06 -92.70 -0.65 21.35 16 40 H 0.25 15.50 8.31 -92.70 -0.77 14.73 16 41 H 0.13 2.71 7.96 -2.39 -0.02 2.69 16 42 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16 43 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -77.04 379.81 3.59 -73.45 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: 0.25 Total: 37.47 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.73 Total: -11.25 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -3.34 Total: -126.14 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.07 Total: -28.85 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Atomic # 16 Polarization: 7.15 SS G_CDS: -1.01 Total: 6.14 kcal Total: -77.04 3.59 -73.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755561739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.165 kcal (2) G-P(sol) polarization free energy of solvation -77.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds