Wall clock time and date at job start Tue Mar 31 2020 13:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50691 * 109.47581 * 2 1 4 4 C 1.37469 * 123.35458 * 264.70928 * 3 2 1 5 5 C 1.33819 * 115.10032 * 179.76283 * 4 3 2 6 6 S 1.70617 * 110.95648 * 0.49004 * 5 4 3 7 7 C 1.36653 * 123.35061 * 85.00120 * 3 2 1 8 8 C 1.46589 * 125.45544 * 0.02562 * 7 3 2 9 9 O 1.21701 * 119.99693 * 350.43458 * 8 7 3 10 10 N 1.34774 * 119.99502 * 170.43274 * 8 7 3 11 11 C 1.46499 * 120.00379 * 0.33699 * 10 8 7 12 12 C 1.46502 * 119.99534 * 180.33136 * 10 8 7 13 13 H 1.08997 * 109.47571 * 0.02562 * 12 10 8 14 14 C 1.52998 * 109.47527 * 240.00033 * 12 10 8 15 15 N 1.46506 * 109.46669 * 54.99946 * 14 12 10 16 16 C 1.36939 * 119.99562 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00552 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99624 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00037 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99786 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47277 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47120 * 120.00646 * 20 18 16 23 23 H 1.48505 * 109.47075 * 240.00421 * 20 18 16 24 24 C 1.53008 * 109.46902 * 120.00301 * 12 10 8 25 25 C 1.53001 * 117.49550 * 248.74462 * 24 12 10 26 26 C 1.52999 * 117.49595 * 180.08849 * 24 12 10 27 27 H 1.08998 * 109.47497 * 59.99215 * 1 2 3 28 28 H 1.08999 * 109.47740 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47059 * 299.99847 * 1 2 3 30 30 H 1.09011 * 109.47059 * 240.00153 * 2 1 3 31 31 H 1.08998 * 109.47497 * 120.00784 * 2 1 3 32 32 H 1.08005 * 122.44887 * 0.02562 * 4 3 2 33 33 H 1.08009 * 124.52301 * 180.21138 * 5 4 3 34 34 H 1.08999 * 109.47428 * 83.47974 * 11 10 8 35 35 H 1.09005 * 109.46881 * 203.48004 * 11 10 8 36 36 H 1.08998 * 109.46694 * 323.47463 * 11 10 8 37 37 H 1.08993 * 109.47561 * 174.99946 * 14 12 10 38 38 H 1.08999 * 109.47329 * 295.00866 * 14 12 10 39 39 H 0.96999 * 120.00039 * 0.02562 * 15 14 12 40 40 H 0.96998 * 119.99595 * 179.97438 * 19 18 16 41 41 H 1.08994 * 115.54874 * 34.41864 * 24 12 10 42 42 H 1.09000 * 117.49833 * 0.02562 * 25 24 12 43 43 H 1.08999 * 117.49499 * 145.01809 * 25 24 12 44 44 H 1.08998 * 117.49653 * 214.97685 * 26 24 12 45 45 H 1.08994 * 117.50153 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3842 2.0980 -1.1434 5 6 2.8043 3.3541 -0.9525 6 16 2.7927 3.7562 0.7055 7 6 2.1891 2.1621 1.1371 8 6 1.9006 1.7020 2.4987 9 8 1.3244 0.6446 2.6744 10 7 2.2736 2.4501 3.5559 11 6 2.9607 3.7265 3.3442 12 6 1.9917 1.9868 4.9169 13 1 1.4798 1.0255 4.8748 14 6 1.1026 3.0079 5.6295 15 7 -0.1031 3.2460 4.8320 16 6 -1.0528 4.1283 5.2736 17 1 -0.9128 4.6488 6.2095 18 6 -2.1950 4.3543 4.5178 19 7 -2.3653 3.7204 3.3770 20 14 -3.4901 5.5583 5.1198 21 1 -3.0633 6.1355 6.4197 22 1 -3.6535 6.6482 4.1245 23 1 -4.7830 4.8487 5.2934 24 6 3.3059 1.8310 5.6850 25 6 3.7489 0.4119 6.0464 26 6 3.2237 1.3508 7.1353 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.3218 1.6505 -2.1244 33 1 3.1140 4.0226 -1.7423 34 1 2.2251 4.5080 3.1536 35 1 3.5381 3.9802 4.2333 36 1 3.6302 3.6411 2.4883 37 1 0.8200 2.6226 6.6091 38 1 1.6487 3.9434 5.7505 39 1 -0.2290 2.7783 3.9916 40 1 -3.1636 3.8782 2.8491 41 1 4.0836 2.5534 5.4373 42 1 3.1043 -0.4108 5.7366 43 1 4.8181 0.2007 6.0367 44 1 3.9477 1.7568 7.8416 45 1 2.2336 1.1462 7.5424 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755572335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:21 Heat of formation + Delta-G solvation = 40.421224 kcal Electronic energy + Delta-G solvation = -26112.430635 eV Core-core repulsion = 22644.134619 eV Total energy + Delta-G solvation = -3468.296016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95201 -38.32892 -37.06666 -35.12341 -34.02614 -32.45979 -31.31983 -29.46510 -27.90988 -26.68742 -25.06134 -24.03142 -22.47201 -22.11057 -21.58263 -21.17723 -19.31139 -18.16128 -17.75613 -17.09634 -16.34748 -15.61034 -15.29251 -15.14774 -14.68052 -14.19971 -14.02152 -13.80729 -13.50961 -13.27768 -13.11579 -12.99281 -12.92795 -12.69261 -12.55939 -12.02456 -11.91522 -11.64721 -11.50110 -11.43344 -11.05739 -11.03452 -10.82640 -10.70284 -10.54082 -10.31952 -10.29593 -10.08509 -9.78949 -9.62873 -9.42478 -8.84047 -8.60836 -8.39368 -8.01397 -6.86141 -5.69356 -2.98982 0.77320 1.72708 2.14560 2.60230 3.22839 3.45464 3.50681 3.53315 3.57080 3.95496 4.59333 4.76798 4.90616 4.98630 5.03138 5.09327 5.20918 5.33763 5.38695 5.40515 5.57681 5.60336 5.61846 5.73578 5.77528 5.79488 5.89242 5.95315 5.99312 6.02510 6.04479 6.22750 6.23288 6.26721 6.29452 6.34000 6.49505 6.53676 6.67685 6.76624 6.81104 7.00585 7.70326 7.74281 8.47510 8.54676 9.59240 10.17762 10.53191 11.52400 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008896 B = 0.005683 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.830095 B = 4925.563529 C = 6532.183396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.025 4.025 4 C -0.146 4.146 5 C -0.267 4.267 6 S 0.225 5.775 7 C -0.258 4.258 8 C 0.594 3.406 9 O -0.522 6.522 10 N -0.590 5.590 11 C 0.066 3.934 12 C 0.166 3.834 13 H 0.103 0.897 14 C 0.148 3.852 15 N -0.728 5.728 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.926 5.926 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.292 1.292 24 C -0.160 4.160 25 C -0.178 4.178 26 C -0.169 4.169 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.021 0.979 39 H 0.386 0.614 40 H 0.253 0.747 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.327 -3.183 -4.711 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.040 4.040 4 C -0.178 4.178 5 C -0.403 4.403 6 S 0.496 5.504 7 C -0.378 4.378 8 C 0.382 3.618 9 O -0.400 6.400 10 N -0.322 5.322 11 C -0.079 4.079 12 C 0.062 3.938 13 H 0.121 0.879 14 C 0.020 3.980 15 N -0.372 5.372 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.574 5.574 20 Si 0.735 3.265 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.180 4.180 25 C -0.215 4.215 26 C -0.207 4.207 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.039 0.961 39 H 0.221 0.779 40 H 0.063 0.937 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.323 -2.263 -3.738 16.898 hybrid contribution -1.151 -0.362 -1.095 1.629 sum 15.173 -2.626 -4.833 16.139 Atomic orbital electron populations 1.21626 0.93908 1.01473 1.02670 1.20306 0.96884 0.90532 1.02545 1.19437 0.96413 0.97601 0.90566 1.19800 1.04339 0.94395 0.99226 1.25774 1.08245 1.01294 1.05026 1.83573 1.59011 1.12358 0.95485 1.24409 1.16582 0.99177 0.97607 1.16843 0.78470 0.83864 0.82603 1.90781 1.41318 1.22867 1.85069 1.47362 1.58289 1.20700 1.05831 1.21935 0.97761 0.86711 1.01536 1.20936 0.92936 1.00331 0.79566 0.87886 1.20938 0.88241 0.94850 0.94014 1.42309 1.18492 1.51677 1.24760 1.19227 0.97882 1.16334 1.03684 0.91268 1.24741 0.98517 1.00437 0.97136 1.69702 1.28372 1.45306 1.14022 0.86171 0.82028 0.80623 0.77681 1.20631 1.21976 1.21931 1.22558 0.99412 0.98069 0.97949 1.23012 1.01111 0.93595 1.03759 1.22926 1.03010 1.03601 0.91157 0.93523 0.92790 0.90915 0.91974 0.89493 0.84725 0.82290 0.90728 0.89555 0.91356 0.95293 0.96149 0.77925 0.93656 0.87724 0.88626 0.89198 0.88848 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.72 37.15 0.36 -1.87 16 2 C -0.06 -0.94 5.47 -27.89 -0.15 -1.10 16 3 C -0.03 -0.39 5.16 -105.48 -0.54 -0.94 16 4 C -0.15 -1.94 9.96 -41.41 -0.41 -2.35 16 5 C -0.27 -3.28 10.92 29.18 0.32 -2.96 16 6 S 0.23 3.02 17.92 -107.50 -1.93 1.09 16 7 C -0.26 -4.33 6.22 -36.79 -0.23 -4.56 16 8 C 0.59 11.27 7.31 -12.89 -0.09 11.18 16 9 O -0.52 -11.17 12.81 5.19 0.07 -11.10 16 10 N -0.59 -10.11 2.24 -175.51 -0.39 -10.50 16 11 C 0.07 0.93 7.98 59.85 0.48 1.40 16 12 C 0.17 2.86 2.41 -67.93 -0.16 2.70 16 13 H 0.10 2.03 6.65 -51.93 -0.35 1.69 16 14 C 0.15 2.99 5.32 -4.04 -0.02 2.97 16 15 N -0.73 -18.80 5.43 -59.91 -0.33 -19.13 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 20 Si 0.90 22.74 29.55 -169.99 -5.02 17.71 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 C -0.16 -2.14 5.12 -90.62 -0.46 -2.60 16 25 C -0.18 -2.14 10.18 -26.69 -0.27 -2.42 16 26 C -0.17 -2.01 9.80 -26.70 -0.26 -2.27 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.45 7.20 -51.92 -0.37 1.08 16 30 H 0.06 0.75 8.12 -51.92 -0.42 0.33 16 31 H 0.09 1.42 6.59 -51.93 -0.34 1.07 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.07 1.19 7.76 -51.93 -0.40 0.78 16 35 H 0.09 1.01 6.52 -51.93 -0.34 0.67 16 36 H 0.07 0.83 4.64 -23.51 -0.11 0.72 16 37 H 0.03 0.59 7.47 -51.93 -0.39 0.20 16 38 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 39 H 0.39 10.90 7.06 -40.82 -0.29 10.62 16 40 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.10 1.25 6.68 -51.93 -0.35 0.90 16 42 H 0.10 1.25 8.05 -51.93 -0.42 0.83 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 1.26 7.66 -51.93 -0.40 0.86 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -32.96 370.48 -9.66 -42.62 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -6.66 Total: 11.90 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.70 Total: -10.20 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.01 Total: -57.60 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.93 Total: 1.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.96 -9.66 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755572335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.044 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds