Wall clock time and date at job start Tue Mar 31 2020 13:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50691 * 109.47581 * 2 1 4 4 C 1.37469 * 123.35458 * 264.70928 * 3 2 1 5 5 C 1.33819 * 115.10032 * 179.76283 * 4 3 2 6 6 S 1.70617 * 110.95648 * 0.49004 * 5 4 3 7 7 C 1.36653 * 123.35061 * 85.00120 * 3 2 1 8 8 C 1.46589 * 125.45544 * 0.02562 * 7 3 2 9 9 O 1.21701 * 119.99693 * 350.43458 * 8 7 3 10 10 N 1.34774 * 119.99502 * 170.43274 * 8 7 3 11 11 C 1.46499 * 120.00379 * 0.33699 * 10 8 7 12 12 C 1.46502 * 119.99534 * 180.33136 * 10 8 7 13 13 H 1.08997 * 109.47571 * 0.02562 * 12 10 8 14 14 C 1.52998 * 109.47527 * 240.00033 * 12 10 8 15 15 N 1.46506 * 109.46669 * 54.99946 * 14 12 10 16 16 C 1.36939 * 119.99562 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00552 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99624 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00037 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99786 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47277 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47120 * 120.00646 * 20 18 16 23 23 H 1.48505 * 109.47075 * 240.00421 * 20 18 16 24 24 C 1.53008 * 109.46902 * 120.00301 * 12 10 8 25 25 C 1.53001 * 117.49550 * 248.74462 * 24 12 10 26 26 C 1.52999 * 117.49595 * 180.08849 * 24 12 10 27 27 H 1.08998 * 109.47497 * 59.99215 * 1 2 3 28 28 H 1.08999 * 109.47740 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47059 * 299.99847 * 1 2 3 30 30 H 1.09011 * 109.47059 * 240.00153 * 2 1 3 31 31 H 1.08998 * 109.47497 * 120.00784 * 2 1 3 32 32 H 1.08005 * 122.44887 * 0.02562 * 4 3 2 33 33 H 1.08009 * 124.52301 * 180.21138 * 5 4 3 34 34 H 1.08999 * 109.47428 * 83.47974 * 11 10 8 35 35 H 1.09005 * 109.46881 * 203.48004 * 11 10 8 36 36 H 1.08998 * 109.46694 * 323.47463 * 11 10 8 37 37 H 1.08993 * 109.47561 * 174.99946 * 14 12 10 38 38 H 1.08999 * 109.47329 * 295.00866 * 14 12 10 39 39 H 0.96999 * 120.00039 * 0.02562 * 15 14 12 40 40 H 0.96998 * 119.99595 * 179.97438 * 19 18 16 41 41 H 1.08994 * 115.54874 * 34.41864 * 24 12 10 42 42 H 1.09000 * 117.49833 * 0.02562 * 25 24 12 43 43 H 1.08999 * 117.49499 * 145.01809 * 25 24 12 44 44 H 1.08998 * 117.49653 * 214.97685 * 26 24 12 45 45 H 1.08994 * 117.50153 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3842 2.0980 -1.1434 5 6 2.8043 3.3541 -0.9525 6 16 2.7927 3.7562 0.7055 7 6 2.1891 2.1621 1.1371 8 6 1.9006 1.7020 2.4987 9 8 1.3244 0.6446 2.6744 10 7 2.2736 2.4501 3.5559 11 6 2.9607 3.7265 3.3442 12 6 1.9917 1.9868 4.9169 13 1 1.4798 1.0255 4.8748 14 6 1.1026 3.0079 5.6295 15 7 -0.1031 3.2460 4.8320 16 6 -1.0528 4.1283 5.2736 17 1 -0.9128 4.6488 6.2095 18 6 -2.1950 4.3543 4.5178 19 7 -2.3653 3.7204 3.3770 20 14 -3.4901 5.5583 5.1198 21 1 -3.0633 6.1355 6.4197 22 1 -3.6535 6.6482 4.1245 23 1 -4.7830 4.8487 5.2934 24 6 3.3059 1.8310 5.6850 25 6 3.7489 0.4119 6.0464 26 6 3.2237 1.3508 7.1353 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.3218 1.6505 -2.1244 33 1 3.1140 4.0226 -1.7423 34 1 2.2251 4.5080 3.1536 35 1 3.5381 3.9802 4.2333 36 1 3.6302 3.6411 2.4883 37 1 0.8200 2.6226 6.6091 38 1 1.6487 3.9434 5.7505 39 1 -0.2290 2.7783 3.9916 40 1 -3.1636 3.8782 2.8491 41 1 4.0836 2.5534 5.4373 42 1 3.1043 -0.4108 5.7366 43 1 4.8181 0.2007 6.0367 44 1 3.9477 1.7568 7.8416 45 1 2.2336 1.1462 7.5424 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755572335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:20 Heat of formation + Delta-G solvation = 20.923030 kcal Electronic energy + Delta-G solvation = -26113.276140 eV Core-core repulsion = 22644.134619 eV Total energy + Delta-G solvation = -3469.141521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28931 -39.49325 -38.27275 -36.57828 -35.81549 -33.64180 -33.25178 -30.91781 -29.34249 -27.98043 -26.49496 -25.70125 -23.84634 -23.25262 -22.90459 -22.34517 -20.67030 -19.34667 -19.13918 -18.99715 -17.60220 -16.90632 -16.67812 -16.53173 -16.22479 -15.60111 -15.38345 -15.05232 -14.99769 -14.79321 -14.65553 -14.42579 -14.18013 -13.98468 -13.76163 -13.45779 -13.18014 -13.10526 -12.90831 -12.81085 -12.74253 -12.40674 -12.25505 -12.20570 -12.06362 -11.81547 -11.75934 -11.36824 -11.32742 -11.02076 -10.90511 -10.78811 -9.84943 -9.57847 -9.17471 -8.99709 -7.92448 -5.22955 -0.37435 0.60252 1.08923 1.44566 1.46170 1.48268 1.56156 1.94916 2.24081 2.54505 2.91169 3.39954 3.52112 3.72171 3.94238 3.96474 4.04026 4.13136 4.16059 4.18743 4.31287 4.36225 4.40048 4.50476 4.51109 4.53746 4.65837 4.76183 4.79590 4.80371 4.88165 4.89163 5.04445 5.06663 5.09431 5.12531 5.24131 5.29797 5.38552 5.46078 5.48432 5.55146 5.64995 6.26040 6.37130 7.16593 7.32795 8.08642 8.32354 9.30304 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008896 B = 0.005683 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.830095 B = 4925.563529 C = 6532.183396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.061 4.061 3 C -0.030 4.030 4 C -0.158 4.158 5 C -0.251 4.251 6 S 0.250 5.750 7 C -0.305 4.305 8 C 0.581 3.419 9 O -0.564 6.564 10 N -0.592 5.592 11 C 0.064 3.936 12 C 0.174 3.826 13 H 0.067 0.933 14 C 0.148 3.852 15 N -0.741 5.741 16 C -0.241 4.241 17 H 0.079 0.921 18 C -0.076 4.076 19 N -0.967 5.967 20 Si 0.973 3.027 21 H -0.262 1.262 22 H -0.293 1.293 23 H -0.298 1.298 24 C -0.167 4.167 25 C -0.172 4.172 26 C -0.159 4.159 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.163 0.837 33 H 0.195 0.805 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.128 0.872 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.586 -1.654 -5.040 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.047 4.047 4 C -0.188 4.188 5 C -0.387 4.387 6 S 0.521 5.479 7 C -0.425 4.425 8 C 0.371 3.629 9 O -0.446 6.446 10 N -0.322 5.322 11 C -0.081 4.081 12 C 0.070 3.930 13 H 0.085 0.915 14 C 0.021 3.979 15 N -0.384 5.384 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.268 4.268 19 N -0.618 5.618 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.225 1.225 24 C -0.187 4.187 25 C -0.209 4.209 26 C -0.196 4.196 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.180 0.820 33 H 0.212 0.788 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.202 0.798 40 H 0.056 0.944 41 H 0.146 0.854 42 H 0.095 0.905 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.634 -0.703 -4.010 19.074 hybrid contribution -1.820 -0.853 -0.999 2.245 sum 16.814 -1.556 -5.009 17.613 Atomic orbital electron populations 1.21537 0.95107 1.01742 1.00603 1.20278 0.95718 0.90922 1.03084 1.19756 0.95826 0.97816 0.91258 1.20018 1.04541 0.94729 0.99497 1.26219 1.06092 1.01314 1.05116 1.83306 1.58143 1.09999 0.96460 1.24445 1.19469 1.01699 0.96884 1.17339 0.77951 0.83665 0.83951 1.90739 1.43207 1.24745 1.85900 1.47467 1.57959 1.21466 1.05334 1.22111 0.97489 0.84597 1.03860 1.20699 0.94491 0.97531 0.80258 0.91453 1.21110 0.86940 0.96274 0.93553 1.42524 1.20008 1.51145 1.24695 1.19664 0.98199 1.15844 1.03576 0.90305 1.25596 1.00964 1.02766 0.97522 1.69899 1.28828 1.47449 1.15592 0.85076 0.78773 0.78143 0.77777 1.18663 1.21995 1.22520 1.22466 0.97735 0.99790 0.98671 1.23039 1.02198 0.92298 1.03376 1.23012 1.03085 1.02745 0.90759 0.92373 0.91423 0.95910 0.88540 0.91660 0.81968 0.78760 0.92777 0.86821 0.89295 0.95178 0.94558 0.79800 0.94356 0.85400 0.90530 0.86663 0.85974 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.72 71.98 0.70 -3.74 16 2 C -0.06 -1.85 5.47 29.84 0.16 -1.68 16 3 C -0.03 -0.95 5.16 -20.42 -0.11 -1.05 16 4 C -0.16 -3.82 9.96 21.08 0.21 -3.61 16 5 C -0.25 -5.44 10.92 66.81 0.73 -4.71 16 6 S 0.25 6.40 17.92 -56.49 -1.01 5.39 16 7 C -0.31 -10.49 6.22 24.08 0.15 -10.34 16 8 C 0.58 23.37 7.31 86.42 0.63 24.01 16 9 O -0.56 -26.36 12.81 -4.35 -0.06 -26.41 16 10 N -0.59 -20.88 2.24 -827.39 -1.86 -22.74 16 11 C 0.06 1.74 7.98 127.77 1.02 2.76 16 12 C 0.17 6.19 2.41 44.99 0.11 6.30 16 13 H 0.07 2.88 6.65 -2.39 -0.02 2.86 16 14 C 0.15 6.07 5.32 86.38 0.46 6.53 16 15 N -0.74 -39.56 5.43 -343.44 -1.87 -41.43 16 16 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 18 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 19 N -0.97 -62.19 13.06 21.65 0.28 -61.90 16 20 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 24 C -0.17 -4.26 5.12 -10.79 -0.06 -4.32 16 25 C -0.17 -3.97 10.18 30.62 0.31 -3.66 16 26 C -0.16 -3.49 9.80 30.62 0.30 -3.19 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.02 0.96 7.20 -2.38 -0.02 0.95 16 30 H 0.10 2.21 8.12 -2.38 -0.02 2.19 16 31 H 0.06 2.26 6.59 -2.39 -0.02 2.25 16 32 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.20 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.05 1.72 7.76 -2.39 -0.02 1.70 16 35 H 0.11 2.42 6.52 -2.38 -0.02 2.41 16 36 H 0.09 2.06 4.64 -20.46 -0.09 1.97 16 37 H 0.03 1.24 7.47 -2.39 -0.02 1.22 16 38 H 0.04 1.39 7.84 -2.39 -0.02 1.37 16 39 H 0.37 22.08 7.06 -92.71 -0.65 21.42 16 40 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.13 2.68 6.68 -2.39 -0.02 2.66 16 42 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16 43 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 2.13 7.66 -2.39 -0.02 2.11 16 Total: -1.00 -75.99 370.48 3.71 -72.28 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: 0.26 Total: 39.11 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 5.93 Total: -13.75 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -3.44 Total: -126.07 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.06 Total: -26.41 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.01 Total: 5.39 kcal Total: -75.99 3.71 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755572335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.206 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds