Wall clock time and date at job start Tue Mar 31 2020 14:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.74793 * 2 1 4 4 C 1.52261 * 109.60621 * 239.58297 * 2 1 3 5 5 C 1.39005 * 124.27762 * 42.92437 * 4 2 1 6 6 C 1.33029 * 115.65993 * 180.02562 * 5 4 2 7 7 S 1.75785 * 109.60314 * 359.97438 * 6 5 4 8 8 C 1.34798 * 122.07066 * 222.93833 * 4 2 1 9 9 C 1.51408 * 123.96435 * 359.87910 * 8 4 2 10 10 C 1.53363 * 108.07126 * 344.48110 * 9 8 4 11 11 N 1.46895 * 109.61296 * 120.43202 * 2 1 3 12 12 C 1.46901 * 111.00148 * 48.21081 * 11 2 1 13 13 C 1.52990 * 109.47470 * 189.03440 * 12 11 2 14 14 C 1.50701 * 109.47349 * 179.97438 * 13 12 11 15 15 O 1.21274 * 120.00147 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00076 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99870 * 359.97438 * 16 14 13 18 18 C 1.46498 * 119.99962 * 180.02562 * 16 14 13 19 19 C 1.50695 * 109.47750 * 89.99618 * 18 16 14 20 20 H 1.08006 * 119.99649 * 0.02562 * 19 18 16 21 21 C 1.37871 * 120.00463 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00638 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99883 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47026 * 89.99789 * 23 21 19 25 25 H 1.48494 * 109.47338 * 210.00229 * 23 21 19 26 26 H 1.48498 * 109.47138 * 330.00258 * 23 21 19 27 27 H 1.09002 * 109.46474 * 292.32978 * 1 2 3 28 28 H 1.08994 * 109.47053 * 52.32817 * 1 2 3 29 29 H 1.08995 * 109.46977 * 172.33325 * 1 2 3 30 30 H 1.07995 * 122.17459 * 0.08944 * 5 4 2 31 31 H 1.07997 * 125.19450 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.74788 * 224.83413 * 9 8 4 33 33 H 1.08995 * 109.74603 * 104.11910 * 9 8 4 34 34 H 1.09000 * 109.53171 * 288.95236 * 10 9 8 35 35 H 1.09000 * 109.60016 * 168.75789 * 10 9 8 36 36 H 1.08998 * 109.47328 * 69.03227 * 12 11 2 37 37 H 1.09002 * 109.46724 * 309.03655 * 12 11 2 38 38 H 1.09006 * 109.47540 * 59.99949 * 13 12 11 39 39 H 1.09002 * 109.47323 * 299.99849 * 13 12 11 40 40 H 1.08998 * 109.46476 * 90.00753 * 17 16 14 41 41 H 1.09000 * 109.47177 * 209.99884 * 17 16 14 42 42 H 1.08996 * 109.47506 * 330.00565 * 17 16 14 43 43 H 1.09001 * 109.46970 * 210.00133 * 18 16 14 44 44 H 1.09001 * 109.46974 * 329.99317 * 18 16 14 45 45 H 0.96990 * 120.00475 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0409 -0.7262 -1.2369 5 6 1.5113 -0.5679 -2.5123 6 6 2.0898 -1.2878 -3.4697 7 16 3.3927 -2.2463 -2.7813 8 6 3.0689 -1.5965 -1.1824 9 6 3.8184 -1.9419 0.0870 10 6 3.4809 -0.8814 1.1422 11 7 2.0231 -0.7009 1.1931 12 6 1.3389 -1.9891 1.3673 13 6 1.7092 -2.5834 2.7275 14 6 1.0068 -3.9047 2.9065 15 8 0.2819 -4.3294 2.0319 16 7 1.1843 -4.6144 4.0385 17 6 2.0604 -4.1016 5.0947 18 6 0.5019 -5.8991 4.2121 19 6 1.3737 -7.0071 3.6798 20 1 2.3397 -6.7773 3.2550 21 6 0.9382 -8.3140 3.7351 22 7 1.6991 -9.2811 3.2711 23 14 -0.7324 -8.7115 4.4705 24 1 -1.7646 -8.6737 3.4035 25 1 -0.6966 -10.0665 5.0769 26 1 -1.0640 -7.7101 5.5157 27 1 -0.3632 0.3905 0.9507 28 1 -0.3633 0.6280 -0.8134 29 1 -0.3633 -1.0184 -0.1371 30 1 0.6846 0.0972 -2.7132 31 1 1.8028 -1.2840 -4.5109 32 1 4.8910 -1.9404 -0.1066 33 1 3.5090 -2.9252 0.4413 34 1 3.9560 0.0625 0.8751 35 1 3.8421 -1.2081 2.1174 36 1 1.6457 -2.6733 0.5762 37 1 0.2607 -1.8373 1.3184 38 1 1.4024 -1.8993 3.5187 39 1 2.7875 -2.7353 2.7764 40 1 1.4783 -3.4912 5.7850 41 1 2.5054 -4.9371 5.6352 42 1 2.8493 -3.4951 4.6499 43 1 0.3074 -6.0669 5.2714 44 1 -0.4420 -5.8857 3.6671 45 1 1.3929 -10.2005 3.3103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042764624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:34 Heat of formation + Delta-G solvation = 10.800220 kcal Electronic energy + Delta-G solvation = -25563.301822 eV Core-core repulsion = 22093.721343 eV Total energy + Delta-G solvation = -3469.580479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48063 -38.92190 -36.41063 -34.89252 -33.05391 -32.62124 -31.80079 -29.54916 -28.29634 -27.20690 -25.99752 -25.10351 -23.37216 -22.34706 -21.90844 -20.33156 -18.40437 -17.92047 -17.37987 -16.95910 -16.40203 -16.21709 -15.49804 -15.39318 -14.84332 -14.63257 -14.51452 -13.91248 -13.80029 -13.40961 -13.10816 -12.89500 -12.72867 -12.53986 -12.34368 -12.25669 -11.99755 -11.96339 -11.91020 -11.80017 -11.49996 -11.40315 -11.17725 -11.01257 -10.89488 -10.82394 -10.50492 -10.48195 -10.13003 -9.53555 -8.97359 -8.64299 -8.58160 -8.43176 -8.37051 -7.67550 -6.08083 -4.06722 0.90913 1.54986 1.92851 2.57427 3.29828 3.35782 3.37668 3.39240 3.63757 4.09588 4.40425 4.56126 4.62144 4.83246 4.86660 5.05438 5.15148 5.17077 5.22053 5.24573 5.28842 5.36173 5.39706 5.53521 5.58392 5.60677 5.66525 5.72651 5.78548 5.87182 5.91512 6.04683 6.08233 6.11288 6.18532 6.21571 6.28048 6.40743 6.71485 6.94946 6.99260 7.00290 7.36275 7.62303 8.27890 8.48041 8.93716 9.01800 9.52481 11.05382 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.003346 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.095613 B = 8365.875096 C = 9003.589918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.149 3.851 3 H 0.094 0.906 4 C -0.140 4.140 5 C -0.119 4.119 6 C -0.221 4.221 7 S 0.099 5.901 8 C -0.172 4.172 9 C -0.090 4.090 10 C 0.058 3.942 11 N -0.527 5.527 12 C 0.060 3.940 13 C -0.134 4.134 14 C 0.507 3.493 15 O -0.543 6.543 16 N -0.599 5.599 17 C 0.084 3.916 18 C 0.215 3.785 19 C -0.528 4.528 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.877 3.123 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.266 1.266 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 22.047 -6.374 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.356 4.356 7 S 0.365 5.635 8 C -0.290 4.290 9 C -0.131 4.131 10 C -0.072 4.072 11 N -0.249 5.249 12 C -0.068 4.068 13 C -0.175 4.175 14 C 0.293 3.707 15 O -0.421 6.421 16 N -0.331 5.331 17 C -0.060 4.060 18 C 0.094 3.906 19 C -0.567 4.567 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.537 5.537 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.190 1.190 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.180 0.820 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.874 20.846 -7.066 22.349 hybrid contribution -1.468 -0.088 0.028 1.471 sum 2.406 20.758 -7.038 22.050 Atomic orbital electron populations 1.21941 0.93375 1.02809 1.02376 1.20680 0.95413 0.96602 0.83531 0.88831 1.20394 0.97440 1.00814 0.96763 1.19912 1.01735 1.01768 0.91548 1.25381 1.02660 1.04169 1.03415 1.84208 1.34022 1.45244 1.00014 1.24777 1.02511 1.03246 0.98436 1.21013 0.99440 1.01587 0.91047 1.22275 0.88578 0.98101 0.98211 1.62387 1.04359 1.21730 1.36405 1.22000 0.99995 0.88779 0.96031 1.21634 1.01364 0.95231 0.99245 1.20349 0.82437 0.85843 0.82076 1.90667 1.39278 1.71223 1.40925 1.47843 1.46609 1.21903 1.16775 1.21653 0.93624 0.99688 0.91018 1.19646 0.93899 0.80421 0.96591 1.21331 1.04764 0.90094 1.40471 0.90860 1.24858 0.97121 0.96130 0.94920 1.69894 1.37306 1.00092 1.46394 0.86844 0.84941 0.77870 0.80003 1.19917 1.21069 1.19049 0.91166 0.92060 0.91690 0.84566 0.82023 0.89931 0.89275 0.90436 0.89358 0.92905 0.89408 0.88831 0.89590 0.93637 0.90698 0.92118 0.95302 0.94611 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.83 37.16 0.29 -1.17 16 2 C 0.15 1.56 3.13 -68.09 -0.21 1.35 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.14 -1.64 5.00 -104.78 -0.52 -2.17 16 5 C -0.12 -1.28 9.46 -41.11 -0.39 -1.67 16 6 C -0.22 -2.35 11.21 28.92 0.32 -2.03 16 7 S 0.10 1.17 23.32 -107.50 -2.51 -1.34 16 8 C -0.17 -2.14 5.66 -35.18 -0.20 -2.34 16 9 C -0.09 -1.03 5.69 -27.35 -0.16 -1.19 16 10 C 0.06 0.58 5.52 -3.59 -0.02 0.56 16 11 N -0.53 -5.95 4.84 -226.81 -1.10 -7.05 16 12 C 0.06 0.84 3.13 -3.83 -0.01 0.83 16 13 C -0.13 -1.92 4.14 -27.89 -0.12 -2.04 16 14 C 0.51 10.25 7.67 -10.98 -0.08 10.17 16 15 O -0.54 -13.40 15.56 5.56 0.09 -13.31 16 16 N -0.60 -12.36 2.86 -182.96 -0.52 -12.88 16 17 C 0.08 1.28 10.24 59.85 0.61 1.89 16 18 C 0.22 5.33 4.23 -5.20 -0.02 5.30 16 19 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 20 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 21 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 22 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 23 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.49 7.58 -51.93 -0.39 0.10 16 29 H 0.06 0.77 6.60 -51.93 -0.34 0.43 16 30 H 0.14 1.19 7.50 -52.49 -0.39 0.80 16 31 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.20 6.89 -51.93 -0.36 0.85 16 34 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 35 H 0.09 0.79 6.83 -51.93 -0.35 0.44 16 36 H 0.05 0.89 5.37 -51.93 -0.28 0.61 16 37 H 0.09 1.33 5.76 -51.93 -0.30 1.03 16 38 H 0.09 1.16 8.11 -51.93 -0.42 0.73 16 39 H 0.09 1.11 5.95 -51.93 -0.31 0.80 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 42 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 43 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 44 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -34.45 361.22 -10.19 -44.64 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.75 Total: 0.70 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.95 Total: -6.15 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.85 Total: -47.09 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.45 -10.19 -44.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042764624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.437 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds