Wall clock time and date at job start Tue Mar 31 2020 14:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.75011 * 2 1 4 4 C 1.52261 * 109.60841 * 120.43392 * 2 1 3 5 5 C 1.39007 * 124.27347 * 317.14793 * 4 2 1 6 6 C 1.33027 * 115.65999 * 179.88494 * 5 4 2 7 7 S 1.75780 * 109.60487 * 0.02562 * 6 5 4 8 8 C 1.34800 * 122.07386 * 137.09646 * 4 2 1 9 9 C 1.51400 * 123.96620 * 0.12000 * 8 4 2 10 10 C 1.53356 * 108.07550 * 15.47850 * 9 8 4 11 11 N 1.46905 * 109.61072 * 239.56708 * 2 1 3 12 12 C 1.46900 * 111.00163 * 311.75043 * 11 2 1 13 13 C 1.53002 * 109.47223 * 177.30554 * 12 11 2 14 14 C 1.50708 * 109.46905 * 185.17493 * 13 12 11 15 15 O 1.21273 * 119.99916 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99555 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00182 * 359.97438 * 16 14 13 18 18 C 1.46504 * 119.99779 * 180.02562 * 16 14 13 19 19 C 1.50697 * 109.47589 * 89.99353 * 18 16 14 20 20 H 1.08006 * 119.99849 * 359.97438 * 19 18 16 21 21 C 1.37869 * 120.00169 * 179.97438 * 19 18 16 22 22 N 1.31520 * 119.99879 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00369 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47468 * 270.00662 * 23 21 19 25 25 H 1.48506 * 109.46605 * 30.00331 * 23 21 19 26 26 H 1.48499 * 109.47109 * 149.99728 * 23 21 19 27 27 H 1.08999 * 109.47416 * 180.43168 * 1 2 3 28 28 H 1.08998 * 109.47457 * 300.43189 * 1 2 3 29 29 H 1.08994 * 109.47339 * 60.43287 * 1 2 3 30 30 H 1.08005 * 122.17323 * 359.90873 * 5 4 2 31 31 H 1.07999 * 125.19349 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.74433 * 255.83538 * 9 8 4 33 33 H 1.09000 * 109.74838 * 135.12422 * 9 8 4 34 34 H 1.09007 * 109.53684 * 191.32119 * 10 9 8 35 35 H 1.09000 * 109.59983 * 71.12615 * 10 9 8 36 36 H 1.09003 * 109.47288 * 57.30398 * 12 11 2 37 37 H 1.09006 * 109.47255 * 297.30439 * 12 11 2 38 38 H 1.08997 * 109.46700 * 65.17622 * 13 12 11 39 39 H 1.08994 * 109.46950 * 305.17066 * 13 12 11 40 40 H 1.08994 * 109.47521 * 270.00515 * 17 16 14 41 41 H 1.08998 * 109.47457 * 30.01002 * 17 16 14 42 42 H 1.09001 * 109.47191 * 150.00481 * 17 16 14 43 43 H 1.09001 * 109.47015 * 329.98879 * 18 16 14 44 44 H 1.08999 * 109.46705 * 209.99831 * 18 16 14 45 45 H 0.97000 * 120.00004 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0409 -0.7265 1.2367 5 6 1.5104 -0.5696 2.5119 6 6 2.0878 -1.2910 3.4688 7 16 3.3908 -2.2491 2.7802 8 6 3.0693 -1.5963 1.1821 9 6 3.8194 -1.9408 -0.0872 10 6 3.4810 -0.8807 -1.1424 11 7 2.0230 -0.7010 -1.1932 12 6 1.3395 -1.9896 -1.3668 13 6 1.8299 -2.6579 -2.6528 14 6 1.0389 -3.9171 -2.8977 15 8 0.1691 -4.2476 -2.1200 16 7 1.2991 -4.6763 -3.9805 17 6 2.3502 -4.2773 -4.9195 18 6 0.5298 -5.9001 -4.2189 19 6 -0.6847 -5.5762 -5.0503 20 1 -0.8657 -4.5602 -5.3689 21 6 -1.5647 -6.5768 -5.4042 22 7 -1.3445 -7.8139 -5.0158 23 14 -3.0704 -6.1753 -6.4341 24 1 -4.2056 -5.8343 -5.5395 25 1 -2.7719 -5.0195 -7.3175 26 1 -3.4306 -7.3527 -7.2643 27 1 -0.3634 -1.0276 0.0077 28 1 -0.3634 0.5205 0.8861 29 1 -0.3634 0.5071 -0.8938 30 1 0.6827 0.0946 2.7127 31 1 1.7999 -1.2884 4.5098 32 1 3.5112 -2.9245 -0.4416 33 1 4.8920 -1.9381 0.1066 34 1 3.8419 -1.2086 -2.1173 35 1 3.9556 0.0640 -0.8770 36 1 0.2639 -1.8247 -1.4304 37 1 1.5585 -2.6347 -0.5158 38 1 2.8865 -2.9061 -2.5530 39 1 1.6946 -1.9750 -3.4915 40 1 1.9228 -3.6410 -5.6944 41 1 3.1255 -3.7282 -4.3853 42 1 2.7846 -5.1658 -5.3777 43 1 0.2148 -6.3229 -3.2649 44 1 1.1509 -6.6222 -4.7489 45 1 -0.5628 -8.0224 -4.4807 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042764628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:38 Heat of formation + Delta-G solvation = 3.195164 kcal Electronic energy + Delta-G solvation = -25511.615167 eV Core-core repulsion = 22041.704908 eV Total energy + Delta-G solvation = -3469.910259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55483 -38.92132 -36.48266 -34.93834 -33.10888 -32.89645 -31.79449 -29.46591 -27.54300 -27.21328 -25.95079 -24.93938 -23.43652 -22.39470 -22.31431 -20.44151 -18.57877 -18.00761 -17.47988 -16.92752 -16.44650 -16.12746 -15.71064 -15.35921 -14.79425 -14.60889 -14.37862 -13.86753 -13.69596 -13.51366 -13.34334 -12.97515 -12.64402 -12.57452 -12.34836 -12.30954 -12.02405 -11.96147 -11.82207 -11.77685 -11.48737 -11.31139 -11.19240 -11.02156 -10.91805 -10.86504 -10.59069 -10.52357 -10.10637 -9.11600 -8.97143 -8.72292 -8.49418 -8.42237 -8.36705 -7.60743 -6.37232 -4.08843 0.82424 1.46123 1.83473 2.50694 3.37432 3.45448 3.48731 3.61599 3.64592 4.07920 4.47703 4.55060 4.57004 4.76448 4.81417 4.98984 5.10529 5.12952 5.16577 5.23182 5.29596 5.33690 5.39837 5.48659 5.50675 5.55644 5.61283 5.68747 5.72491 5.80813 5.91048 5.99629 6.09427 6.10405 6.13748 6.15525 6.25544 6.33654 6.80740 6.94593 6.96911 7.13481 7.41206 8.05620 8.29918 8.45337 8.79398 9.03049 9.60927 11.00211 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002969 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.316366 B = 9427.381501 C = 9530.793960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.148 3.852 3 H 0.095 0.905 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.219 4.219 7 S 0.093 5.907 8 C -0.175 4.175 9 C -0.088 4.088 10 C 0.057 3.943 11 N -0.527 5.527 12 C 0.063 3.937 13 C -0.136 4.136 14 C 0.505 3.495 15 O -0.544 6.544 16 N -0.600 5.600 17 C 0.087 3.913 18 C 0.235 3.765 19 C -0.605 4.605 20 H 0.051 0.949 21 C 0.019 3.981 22 N -0.911 5.911 23 Si 1.074 2.926 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.284 1.284 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.138 0.862 31 H 0.163 0.837 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.020 0.980 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.947 17.300 12.119 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.037 3.963 3 H 0.113 0.887 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.354 4.354 7 S 0.359 5.641 8 C -0.293 4.293 9 C -0.129 4.129 10 C -0.073 4.073 11 N -0.248 5.248 12 C -0.065 4.065 13 C -0.177 4.177 14 C 0.292 3.708 15 O -0.421 6.421 16 N -0.332 5.332 17 C -0.057 4.057 18 C 0.115 3.885 19 C -0.644 4.644 20 H 0.070 0.930 21 C -0.185 4.185 22 N -0.547 5.547 23 Si 0.903 3.097 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.209 1.209 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.038 0.962 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.082 15.671 12.023 23.154 hybrid contribution 0.634 1.081 0.967 1.583 sum 12.716 16.752 12.990 24.720 Atomic orbital electron populations 1.21965 0.93185 1.03268 1.02301 1.20703 0.95579 0.96615 0.83382 0.88742 1.20432 0.97206 1.00573 0.96816 1.19949 1.01709 1.01716 0.91540 1.25377 1.02481 1.04089 1.03435 1.84126 1.34327 1.45483 1.00178 1.24749 1.02634 1.03553 0.98334 1.21006 0.99342 1.01371 0.91164 1.22290 0.88732 0.98128 0.98118 1.62401 1.04234 1.21687 1.36487 1.21978 1.00019 0.88332 0.96145 1.21690 1.00037 0.96020 0.99931 1.20302 0.84160 0.84876 0.81496 1.90666 1.33126 1.72039 1.46311 1.47956 1.35920 1.26276 1.23080 1.21610 0.90081 1.00639 0.93357 1.19343 0.90968 0.81092 0.97054 1.22273 1.09401 0.96917 1.35765 0.93029 1.25821 1.01792 0.93020 0.97904 1.70775 1.29529 1.19415 1.34988 0.83468 0.75123 0.75214 0.75938 1.21351 1.21508 1.20931 0.91459 0.92024 0.91151 0.84423 0.81960 0.89650 0.90001 0.89364 0.90384 0.89046 0.93417 0.89947 0.88575 0.93055 0.92464 0.91618 0.94954 0.96188 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.22 37.16 0.31 -1.27 16 2 C 0.15 1.57 3.13 -68.09 -0.21 1.36 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.14 -1.54 4.94 -104.78 -0.52 -2.06 16 5 C -0.12 -1.23 9.44 -41.11 -0.39 -1.62 16 6 C -0.22 -2.18 11.21 28.92 0.32 -1.86 16 7 S 0.09 0.99 23.32 -107.50 -2.51 -1.51 16 8 C -0.18 -2.02 5.62 -35.18 -0.20 -2.22 16 9 C -0.09 -0.90 5.63 -27.36 -0.15 -1.05 16 10 C 0.06 0.54 5.39 -3.59 -0.02 0.52 16 11 N -0.53 -6.03 4.89 -226.79 -1.11 -7.13 16 12 C 0.06 0.90 3.01 -3.82 -0.01 0.89 16 13 C -0.14 -2.00 3.70 -27.88 -0.10 -2.10 16 14 C 0.51 10.56 7.67 -10.98 -0.08 10.47 16 15 O -0.54 -13.83 15.49 5.56 0.09 -13.74 16 16 N -0.60 -12.90 2.86 -182.96 -0.52 -13.43 16 17 C 0.09 1.39 10.29 59.84 0.62 2.00 16 18 C 0.24 6.23 4.52 -5.19 -0.02 6.21 16 19 C -0.60 -17.64 9.39 -34.44 -0.32 -17.96 16 20 H 0.05 1.52 7.81 -52.48 -0.41 1.11 16 21 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 22 N -0.91 -28.15 13.65 55.43 0.76 -27.39 16 23 Si 1.07 25.99 29.90 -169.99 -5.08 20.91 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H 0.07 0.86 6.27 -51.93 -0.33 0.53 16 28 H 0.06 0.53 7.24 -51.93 -0.38 0.16 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.14 1.18 7.30 -52.48 -0.38 0.79 16 31 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.09 0.99 6.35 -51.93 -0.33 0.66 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.74 6.84 -51.93 -0.36 0.39 16 35 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 36 H 0.09 1.50 5.84 -51.93 -0.30 1.19 16 37 H 0.05 0.77 5.61 -51.93 -0.29 0.48 16 38 H 0.08 1.00 5.46 -51.93 -0.28 0.72 16 39 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 42 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 43 H 0.03 0.96 7.29 -51.93 -0.38 0.58 16 44 H 0.02 0.53 7.76 -51.93 -0.40 0.13 16 45 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -34.64 361.18 -10.45 -45.09 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.63 Total: 0.00 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.89 Total: -8.23 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.87 Total: -47.95 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.91 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.64 -10.45 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042764628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.283 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds