Wall clock time and date at job start Tue Mar 31 2020 13:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 N 1.46508 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.36805 * 119.99739 * 261.86844 * 4 3 2 6 6 H 1.07999 * 119.99902 * 196.33914 * 5 4 3 7 7 C 1.39054 * 119.99796 * 16.34048 * 5 4 3 8 8 N 1.31366 * 120.00293 * 12.67161 * 7 5 4 9 9 Si 1.86806 * 119.99718 * 192.67063 * 7 5 4 10 10 H 1.48498 * 109.47015 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46929 * 119.99803 * 9 7 5 12 12 H 1.48497 * 109.47231 * 240.00083 * 9 7 5 13 13 C 1.34772 * 120.00158 * 81.87334 * 4 3 2 14 14 O 1.21723 * 120.00052 * 181.73506 * 13 4 3 15 15 C 1.46723 * 119.99987 * 1.73254 * 13 4 3 16 16 C 1.36454 * 125.56329 * 169.95804 * 15 13 4 17 17 C 1.40641 * 107.64308 * 180.02562 * 16 15 13 18 18 C 1.40386 * 107.33490 * 0.02562 * 17 16 15 19 19 C 1.40141 * 119.96035 * 180.02562 * 18 17 16 20 20 C 1.35470 * 121.68602 * 359.97203 * 19 18 17 21 21 C 1.40984 * 121.17088 * 0.02694 * 20 19 18 22 22 C 1.40352 * 121.18381 * 179.97438 * 21 20 19 23 23 C 1.36300 * 119.69942 * 180.02562 * 22 21 20 24 24 C 1.39110 * 120.93071 * 359.96958 * 23 22 21 25 25 C 1.36479 * 120.82725 * 0.08663 * 24 23 22 26 26 C 1.39733 * 119.68691 * 359.90345 * 25 24 23 27 27 N 1.37324 * 107.33709 * 359.97438 * 18 17 16 28 28 H 0.97004 * 125.59456 * 180.02562 * 27 18 17 29 29 H 1.09001 * 109.47040 * 60.00165 * 1 2 3 30 30 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47135 * 300.00132 * 1 2 3 32 32 H 1.09008 * 109.47471 * 240.00310 * 2 1 3 33 33 H 1.08994 * 109.47684 * 119.99958 * 2 1 3 34 34 H 1.08992 * 109.46941 * 60.00238 * 3 2 1 35 35 H 1.09001 * 109.47083 * 299.99809 * 3 2 1 36 36 H 0.97002 * 119.99919 * 179.97438 * 8 7 5 37 37 H 1.07999 * 126.18025 * 0.05286 * 16 15 13 38 38 H 1.08001 * 119.15494 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.41525 * 179.75290 * 20 19 18 40 40 H 1.08001 * 120.15068 * 359.97438 * 22 21 20 41 41 H 1.08006 * 119.53557 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.58337 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.15758 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1895 1.6099 1.1720 6 1 5.2367 1.8730 1.1531 7 6 3.5367 1.4412 2.3882 8 7 2.3472 0.8849 2.4237 9 14 4.3515 2.0056 3.9716 10 1 5.6785 2.5960 3.6623 11 1 3.4977 3.0262 4.6311 12 1 4.5257 0.8439 4.8801 13 6 4.1784 1.2777 -1.1563 14 8 5.3952 1.2460 -1.1526 15 6 3.4448 1.1363 -2.4191 16 6 3.9992 1.1582 -3.6658 17 6 2.9592 0.9916 -4.5978 18 6 1.7633 0.8695 -3.8727 19 6 0.5495 0.6903 -4.5498 20 6 0.4910 0.6306 -5.9019 21 6 1.6553 0.7464 -6.6885 22 6 1.5951 0.6841 -8.0893 23 6 2.7398 0.7990 -8.8202 24 6 3.9707 0.9783 -8.1975 25 6 4.0638 1.0420 -6.8374 26 6 2.9092 0.9279 -6.0587 27 7 2.0817 0.9605 -2.5400 28 1 1.4516 0.9094 -1.8042 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 1.8921 0.7670 3.2721 37 1 5.0473 1.2809 -3.8953 38 1 -0.3628 0.5983 -3.9790 39 1 -0.4639 0.4875 -6.3857 40 1 0.6461 0.5449 -8.5859 41 1 2.6904 0.7502 -9.8981 42 1 4.8641 1.0672 -8.7980 43 1 5.0250 1.1818 -6.3653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:30 Heat of formation + Delta-G solvation = 73.213503 kcal Electronic energy + Delta-G solvation = -26803.146453 eV Core-core repulsion = 23200.828466 eV Total energy + Delta-G solvation = -3602.317987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38930 -39.35226 -38.01918 -35.82080 -35.02256 -33.01822 -31.98851 -31.55554 -30.54204 -28.88763 -28.12897 -26.16984 -25.01202 -23.17399 -22.83315 -21.98379 -21.08082 -20.22128 -19.69101 -18.00284 -17.50941 -16.99744 -16.23199 -15.74309 -15.16605 -14.84726 -14.59131 -14.31957 -14.11020 -14.05728 -13.65619 -13.38380 -13.10822 -12.99243 -12.79011 -12.67452 -12.54218 -12.35485 -11.99286 -11.89074 -11.53715 -11.22467 -11.09607 -10.90811 -10.79828 -10.61284 -10.59727 -10.44570 -10.38167 -10.09512 -9.60196 -9.16054 -8.79083 -8.73975 -7.97727 -7.72330 -7.21791 -6.52590 -4.04428 0.69850 1.27218 1.95710 2.72705 3.08401 3.14707 3.21434 3.24783 3.44288 3.94571 4.18129 4.36687 4.56530 4.76742 4.93371 4.96425 4.98469 5.15192 5.21181 5.32104 5.42858 5.45523 5.50052 5.58544 5.65159 5.81949 5.85732 5.89216 6.01955 6.04530 6.15654 6.18398 6.27107 6.42320 6.45703 6.46633 6.59031 6.63154 6.70993 6.85498 7.00884 7.08853 7.09564 7.24263 7.35123 7.48177 7.75360 7.92117 8.28382 8.94002 9.14009 9.71652 10.44014 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.003412 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.367917 B = 8204.657272 C = 9261.750734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C 0.104 3.896 4 N -0.428 5.428 5 C -0.295 4.295 6 H 0.108 0.892 7 C 0.027 3.973 8 N -0.871 5.871 9 Si 0.933 3.067 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.495 3.505 14 O -0.573 6.573 15 C 0.054 3.946 16 C -0.139 4.139 17 C -0.106 4.106 18 C 0.060 3.940 19 C -0.088 4.088 20 C -0.110 4.110 21 C -0.065 4.065 22 C -0.103 4.103 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.106 4.106 26 C 0.002 3.998 27 N -0.560 5.560 28 H 0.432 0.568 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.035 0.965 36 H 0.270 0.730 37 H 0.148 0.852 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -0.497 -13.446 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.185 4.185 3 C -0.020 4.020 4 N -0.144 5.144 5 C -0.423 4.423 6 H 0.126 0.874 7 C -0.176 4.176 8 N -0.511 5.511 9 Si 0.760 3.240 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.284 3.716 14 O -0.457 6.457 15 C -0.060 4.060 16 C -0.165 4.165 17 C -0.112 4.112 18 C -0.053 4.053 19 C -0.108 4.108 20 C -0.129 4.129 21 C -0.065 4.065 22 C -0.121 4.121 23 C -0.151 4.151 24 C -0.139 4.139 25 C -0.124 4.124 26 C 0.001 3.999 27 N -0.172 5.172 28 H 0.284 0.716 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.166 0.834 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.943 -0.545 -13.012 14.758 hybrid contribution -0.235 0.109 1.115 1.145 sum -7.178 -0.436 -11.897 13.901 Atomic orbital electron populations 1.21691 0.96617 1.00989 1.00869 1.22238 0.94565 0.98101 1.03577 1.21983 0.81534 0.97030 1.01474 1.43698 1.05080 1.59490 1.06176 1.19899 0.96954 1.43726 0.81709 0.87384 1.25379 0.96439 0.96036 0.99710 1.69952 1.14156 1.40136 1.26886 0.85735 0.79459 0.78443 0.80411 1.19060 1.20512 1.20580 1.16899 0.87038 0.85659 0.82045 1.90682 1.12300 1.57068 1.85657 1.20829 0.81760 1.06909 0.96484 1.20504 0.98815 1.07953 0.89216 1.18851 0.92878 1.08053 0.91413 1.18372 0.95304 1.07367 0.84233 1.19672 0.94679 1.02197 0.94256 1.20454 0.97288 1.02586 0.92604 1.17865 0.92724 1.02588 0.93333 1.20904 0.98439 1.00289 0.92475 1.20711 0.92761 1.02046 0.99592 1.20810 0.97615 1.00824 0.94637 1.20867 0.97924 0.99923 0.93662 1.18328 0.92768 0.98231 0.90529 1.44052 1.08359 1.58053 1.06712 0.71581 0.94819 0.93124 0.91708 0.94408 0.86662 0.86140 0.94788 0.91925 0.83446 0.86468 0.85621 0.86036 0.86537 0.86355 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.77 37.15 0.36 -1.82 16 2 C -0.15 -2.82 4.65 -26.73 -0.12 -2.94 16 3 C 0.10 2.18 4.10 -4.04 -0.02 2.17 16 4 N -0.43 -10.58 2.64 -116.28 -0.31 -10.89 16 5 C -0.29 -7.75 9.40 -15.03 -0.14 -7.89 16 6 H 0.11 3.00 7.32 -52.49 -0.38 2.61 16 7 C 0.03 0.66 5.11 -17.45 -0.09 0.57 16 8 N -0.87 -20.37 8.19 55.50 0.45 -19.91 16 9 Si 0.93 19.37 29.57 -169.99 -5.03 14.34 16 10 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.49 12.41 7.52 -12.84 -0.10 12.32 16 14 O -0.57 -16.06 16.51 5.17 0.09 -15.97 16 15 C 0.05 1.16 6.40 -82.32 -0.53 0.63 16 16 C -0.14 -2.75 10.45 -39.32 -0.41 -3.16 16 17 C -0.11 -1.90 6.20 -104.94 -0.65 -2.55 16 18 C 0.06 1.03 7.25 -83.88 -0.61 0.43 16 19 C -0.09 -1.24 9.91 -39.86 -0.40 -1.64 16 20 C -0.11 -1.39 9.67 -39.53 -0.38 -1.78 16 21 C -0.06 -0.90 5.74 -106.82 -0.61 -1.52 16 22 C -0.10 -1.18 9.77 -39.48 -0.39 -1.57 16 23 C -0.13 -1.44 9.95 -39.96 -0.40 -1.84 16 24 C -0.12 -1.41 9.96 -39.89 -0.40 -1.80 16 25 C -0.11 -1.47 9.74 -39.66 -0.39 -1.86 16 26 C 0.00 0.03 5.89 -104.85 -0.62 -0.59 16 27 N -0.56 -10.38 4.17 -7.29 -0.03 -10.41 16 28 H 0.43 7.52 2.52 -40.82 -0.10 7.42 16 29 H 0.03 0.44 7.44 -51.93 -0.39 0.06 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.74 6.34 -51.92 -0.33 0.41 16 33 H 0.12 2.57 6.26 -51.93 -0.33 2.24 16 34 H 0.12 2.69 5.87 -51.93 -0.31 2.38 16 35 H 0.03 0.66 5.17 -51.93 -0.27 0.40 16 36 H 0.27 5.99 8.31 -40.82 -0.34 5.65 16 37 H 0.15 2.78 8.06 -52.49 -0.42 2.35 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.13 1.63 8.04 -52.49 -0.42 1.21 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -28.81 345.77 -10.53 -39.34 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.04 Total: 13.14 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -5.88 Total: -14.84 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.12 Total: -41.22 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.09 Total: -15.97 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.81 -10.53 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.554 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds