Wall clock time and date at job start Tue Mar 31 2020 13:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 N 1.46508 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.36805 * 119.99739 * 261.86844 * 4 3 2 6 6 H 1.07999 * 119.99902 * 196.33914 * 5 4 3 7 7 C 1.39054 * 119.99796 * 16.34048 * 5 4 3 8 8 N 1.31366 * 120.00293 * 12.67161 * 7 5 4 9 9 Si 1.86806 * 119.99718 * 192.67063 * 7 5 4 10 10 H 1.48498 * 109.47015 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46929 * 119.99803 * 9 7 5 12 12 H 1.48497 * 109.47231 * 240.00083 * 9 7 5 13 13 C 1.34772 * 120.00158 * 81.87334 * 4 3 2 14 14 O 1.21723 * 120.00052 * 181.73506 * 13 4 3 15 15 C 1.46723 * 119.99987 * 1.73254 * 13 4 3 16 16 C 1.36454 * 125.56329 * 169.95804 * 15 13 4 17 17 C 1.40641 * 107.64308 * 180.02562 * 16 15 13 18 18 C 1.40386 * 107.33490 * 0.02562 * 17 16 15 19 19 C 1.40141 * 119.96035 * 180.02562 * 18 17 16 20 20 C 1.35470 * 121.68602 * 359.97203 * 19 18 17 21 21 C 1.40984 * 121.17088 * 0.02694 * 20 19 18 22 22 C 1.40352 * 121.18381 * 179.97438 * 21 20 19 23 23 C 1.36300 * 119.69942 * 180.02562 * 22 21 20 24 24 C 1.39110 * 120.93071 * 359.96958 * 23 22 21 25 25 C 1.36479 * 120.82725 * 0.08663 * 24 23 22 26 26 C 1.39733 * 119.68691 * 359.90345 * 25 24 23 27 27 N 1.37324 * 107.33709 * 359.97438 * 18 17 16 28 28 H 0.97004 * 125.59456 * 180.02562 * 27 18 17 29 29 H 1.09001 * 109.47040 * 60.00165 * 1 2 3 30 30 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47135 * 300.00132 * 1 2 3 32 32 H 1.09008 * 109.47471 * 240.00310 * 2 1 3 33 33 H 1.08994 * 109.47684 * 119.99958 * 2 1 3 34 34 H 1.08992 * 109.46941 * 60.00238 * 3 2 1 35 35 H 1.09001 * 109.47083 * 299.99809 * 3 2 1 36 36 H 0.97002 * 119.99919 * 179.97438 * 8 7 5 37 37 H 1.07999 * 126.18025 * 0.05286 * 16 15 13 38 38 H 1.08001 * 119.15494 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.41525 * 179.75290 * 20 19 18 40 40 H 1.08001 * 120.15068 * 359.97438 * 22 21 20 41 41 H 1.08006 * 119.53557 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.58337 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.15758 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1895 1.6099 1.1720 6 1 5.2367 1.8730 1.1531 7 6 3.5367 1.4412 2.3882 8 7 2.3472 0.8849 2.4237 9 14 4.3515 2.0056 3.9716 10 1 5.6785 2.5960 3.6623 11 1 3.4977 3.0262 4.6311 12 1 4.5257 0.8439 4.8801 13 6 4.1784 1.2777 -1.1563 14 8 5.3952 1.2460 -1.1526 15 6 3.4448 1.1363 -2.4191 16 6 3.9992 1.1582 -3.6658 17 6 2.9592 0.9916 -4.5978 18 6 1.7633 0.8695 -3.8727 19 6 0.5495 0.6903 -4.5498 20 6 0.4910 0.6306 -5.9019 21 6 1.6553 0.7464 -6.6885 22 6 1.5951 0.6841 -8.0893 23 6 2.7398 0.7990 -8.8202 24 6 3.9707 0.9783 -8.1975 25 6 4.0638 1.0420 -6.8374 26 6 2.9092 0.9279 -6.0587 27 7 2.0817 0.9605 -2.5400 28 1 1.4516 0.9094 -1.8042 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 1.8921 0.7670 3.2721 37 1 5.0473 1.2809 -3.8953 38 1 -0.3628 0.5983 -3.9790 39 1 -0.4639 0.4875 -6.3857 40 1 0.6461 0.5449 -8.5859 41 1 2.6904 0.7502 -9.8981 42 1 4.8641 1.0672 -8.7980 43 1 5.0250 1.1818 -6.3653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:29 Heat of formation + Delta-G solvation = 59.613219 kcal Electronic energy + Delta-G solvation = -26803.736206 eV Core-core repulsion = 23200.828466 eV Total energy + Delta-G solvation = -3602.907740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.78736 -40.68876 -39.50623 -37.65710 -36.12199 -34.65242 -33.40799 -33.16291 -31.72176 -30.07520 -29.47859 -27.78581 -26.68546 -24.49637 -23.92717 -23.23806 -22.61080 -21.57302 -21.18850 -19.32221 -19.20118 -18.58949 -17.58119 -16.87449 -16.79067 -16.20665 -16.10683 -15.82042 -15.66484 -15.34120 -15.17482 -14.75973 -14.30726 -14.11989 -14.08859 -14.03162 -13.82500 -13.71082 -13.69631 -13.20492 -12.93211 -12.84285 -12.63701 -12.38966 -12.21443 -12.11311 -11.90005 -11.77570 -11.64143 -11.59853 -11.00476 -10.80157 -10.72212 -9.98618 -9.80569 -8.92944 -8.47448 -8.39200 -6.02130 -0.41324 0.21451 0.65566 1.32040 1.40865 1.48720 1.53449 2.00533 2.18296 2.22364 2.39257 2.83717 3.02765 3.28455 3.64987 3.73621 3.92865 3.96703 4.03020 4.14576 4.23605 4.25331 4.28267 4.35553 4.48698 4.53704 4.58756 4.69308 4.75895 4.79682 4.90147 5.01241 5.08967 5.17796 5.22196 5.31527 5.32906 5.40762 5.41843 5.57888 5.62607 5.70100 5.74260 5.80840 5.94051 6.05483 6.19971 6.38346 6.45992 7.00845 7.23980 7.81570 8.54651 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.003412 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.367917 B = 8204.657272 C = 9261.750734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.108 3.892 4 N -0.436 5.436 5 C -0.345 4.345 6 H 0.076 0.924 7 C 0.005 3.995 8 N -0.866 5.866 9 Si 0.995 3.005 10 H -0.279 1.279 11 H -0.263 1.263 12 H -0.273 1.273 13 C 0.480 3.520 14 O -0.625 6.625 15 C 0.012 3.988 16 C -0.137 4.137 17 C -0.136 4.136 18 C 0.070 3.930 19 C -0.116 4.116 20 C -0.077 4.077 21 C -0.087 4.087 22 C -0.093 4.093 23 C -0.132 4.132 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.020 4.020 27 N -0.555 5.555 28 H 0.434 0.566 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.279 0.721 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.172 0.828 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.143 0.857 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.121 -0.945 -16.389 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.174 4.174 3 C -0.015 4.015 4 N -0.151 5.151 5 C -0.472 4.472 6 H 0.094 0.906 7 C -0.198 4.198 8 N -0.504 5.504 9 Si 0.818 3.182 10 H -0.204 1.204 11 H -0.187 1.187 12 H -0.198 1.198 13 C 0.271 3.729 14 O -0.513 6.513 15 C -0.100 4.100 16 C -0.163 4.163 17 C -0.141 4.141 18 C -0.043 4.043 19 C -0.135 4.135 20 C -0.096 4.096 21 C -0.087 4.087 22 C -0.111 4.111 23 C -0.150 4.150 24 C -0.128 4.128 25 C -0.154 4.154 26 C -0.021 4.021 27 N -0.168 5.168 28 H 0.287 0.713 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.189 0.811 40 H 0.178 0.822 41 H 0.171 0.829 42 H 0.161 0.839 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.812 -1.001 -15.947 19.293 hybrid contribution 0.890 0.207 1.700 1.930 sum -9.922 -0.794 -14.247 17.380 Atomic orbital electron populations 1.21630 0.92967 1.02601 1.02082 1.22055 0.97597 0.96139 1.01588 1.22064 0.79515 0.98385 1.01512 1.43887 1.06539 1.58941 1.05727 1.19771 0.96502 1.47492 0.83475 0.90569 1.26044 0.97073 0.95186 1.01496 1.70029 1.14080 1.38310 1.28005 0.84854 0.78183 0.78338 0.76803 1.20412 1.18727 1.19809 1.17437 0.86902 0.85176 0.83378 1.90600 1.14430 1.59523 1.86750 1.20207 0.83314 1.11488 0.95026 1.20596 0.99130 1.06926 0.89689 1.19032 0.92438 1.09866 0.92813 1.18908 0.96584 1.05533 0.83284 1.20019 0.94274 1.04097 0.95152 1.21031 0.98614 0.97966 0.91986 1.18264 0.92256 1.03225 0.94996 1.21355 1.00399 0.98158 0.91193 1.21188 0.91946 1.00330 1.01531 1.21196 0.99477 0.98386 0.93696 1.20978 0.97434 1.02022 0.95002 1.18565 0.94632 0.99372 0.89494 1.43801 1.07009 1.58378 1.07583 0.71322 0.92277 0.91311 0.91787 0.95110 0.89869 0.87443 0.93138 0.91050 0.84314 0.83402 0.81053 0.82195 0.82904 0.83887 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.77 71.98 0.70 -3.17 16 2 C -0.14 -5.31 4.65 30.59 0.14 -5.17 16 3 C 0.11 4.74 4.10 86.38 0.35 5.10 16 4 N -0.44 -23.21 2.64 -640.02 -1.69 -24.90 16 5 C -0.34 -19.49 9.40 84.11 0.79 -18.70 16 6 H 0.08 4.67 7.32 -2.91 -0.02 4.65 16 7 C 0.01 0.27 5.11 84.96 0.43 0.71 16 8 N -0.87 -41.20 8.19 21.68 0.18 -41.02 16 9 Si 0.99 40.73 29.57 68.60 2.03 42.76 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 12 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 13 C 0.48 26.40 7.52 86.46 0.65 27.05 16 14 O -0.62 -38.77 16.51 -4.42 -0.07 -38.85 16 15 C 0.01 0.57 6.40 39.98 0.26 0.83 16 16 C -0.14 -5.87 10.45 22.44 0.23 -5.64 16 17 C -0.14 -5.04 6.20 -20.07 -0.12 -5.17 16 18 C 0.07 2.39 7.25 39.27 0.28 2.68 16 19 C -0.12 -2.89 9.91 22.09 0.22 -2.67 16 20 C -0.08 -1.59 9.67 22.30 0.22 -1.37 16 21 C -0.09 -2.12 5.74 -21.29 -0.12 -2.24 16 22 C -0.09 -1.64 9.77 22.33 0.22 -1.43 16 23 C -0.13 -2.22 9.95 22.03 0.22 -2.00 16 24 C -0.11 -2.25 9.96 22.07 0.22 -2.03 16 25 C -0.14 -3.76 9.74 22.22 0.22 -3.54 16 26 C -0.02 -0.62 5.89 -20.01 -0.12 -0.74 16 27 N -0.56 -21.19 4.17 -176.97 -0.74 -21.93 16 28 H 0.43 15.25 2.52 -92.71 -0.23 15.02 16 29 H 0.06 1.40 7.44 -2.39 -0.02 1.38 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.03 1.24 6.34 -2.38 -0.02 1.22 16 33 H 0.08 3.82 6.26 -2.39 -0.01 3.81 16 34 H 0.11 4.94 5.87 -2.39 -0.01 4.93 16 35 H 0.05 2.03 5.17 -2.39 -0.01 2.02 16 36 H 0.28 12.25 8.31 -92.71 -0.77 11.48 16 37 H 0.14 5.91 8.06 -2.91 -0.02 5.89 16 38 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.12 3.26 8.04 -2.91 -0.02 3.24 16 Total: -1.00 -70.40 345.77 5.32 -65.08 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: 0.82 Total: 36.37 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.79 Total: -17.51 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -2.25 Total: -87.86 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.07 Total: -38.85 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -70.40 5.32 -65.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.697 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds