Wall clock time and date at job start Tue Mar 31 2020 13:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47426 * 2 1 4 4 N 1.46492 * 109.47405 * 180.02562 * 3 2 1 5 5 C 1.37102 * 120.00270 * 270.00352 * 4 3 2 6 6 H 1.07998 * 120.00662 * 145.32138 * 5 4 3 7 7 C 1.38952 * 119.99417 * 325.32644 * 5 4 3 8 8 N 1.31408 * 120.00265 * 337.23547 * 7 5 4 9 9 Si 1.86804 * 119.99867 * 157.24602 * 7 5 4 10 10 H 1.48501 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47011 * 119.99605 * 9 7 5 12 12 H 1.48505 * 109.46569 * 239.99331 * 9 7 5 13 13 C 1.34781 * 120.00331 * 89.99735 * 4 3 2 14 14 O 1.21286 * 119.99560 * 4.88827 * 13 4 3 15 15 C 1.50697 * 120.00235 * 184.88666 * 13 4 3 16 16 C 1.52997 * 109.47221 * 177.74169 * 15 13 4 17 17 N 1.46500 * 109.47323 * 179.97438 * 16 15 13 18 18 C 1.34782 * 119.99905 * 179.97438 * 17 16 15 19 19 O 1.21562 * 119.99668 * 0.02562 * 18 17 16 20 20 C 1.47721 * 119.99813 * 179.97438 * 18 17 16 21 21 C 1.39657 * 120.11863 * 0.27471 * 20 18 17 22 22 C 1.37831 * 119.87951 * 180.22939 * 21 20 18 23 23 C 1.38656 * 120.11815 * 359.49438 * 22 21 20 24 24 F 1.35105 * 119.88286 * 180.27673 * 23 22 21 25 25 C 1.38652 * 120.24027 * 0.25906 * 23 22 21 26 26 C 1.37839 * 120.11653 * 359.97438 * 25 23 22 27 27 H 1.08999 * 109.47154 * 59.99864 * 1 2 3 28 28 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47212 * 299.99756 * 1 2 3 30 30 H 1.09001 * 109.47106 * 239.99836 * 2 1 3 31 31 H 1.09002 * 109.47116 * 120.00669 * 2 1 3 32 32 H 1.08995 * 109.46726 * 59.99946 * 3 2 1 33 33 H 1.08999 * 109.47066 * 300.00190 * 3 2 1 34 34 H 0.97001 * 120.00412 * 184.95659 * 8 7 5 35 35 H 1.08999 * 109.47345 * 57.73747 * 15 13 4 36 36 H 1.09007 * 109.47185 * 297.73857 * 15 13 4 37 37 H 1.08999 * 109.47306 * 59.99554 * 16 15 13 38 38 H 1.09007 * 109.46786 * 299.99931 * 16 15 13 39 39 H 0.97002 * 119.99580 * 359.97438 * 17 16 15 40 40 H 1.08002 * 120.05757 * 0.02562 * 21 20 18 41 41 H 1.07998 * 119.94225 * 179.77052 * 22 21 20 42 42 H 1.08000 * 119.94397 * 180.02562 * 25 23 22 43 43 H 1.07999 * 120.06000 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1911 1.4422 1.1864 6 1 5.1272 0.9101 1.2690 7 6 3.6818 2.1266 2.2832 8 7 2.8296 3.1110 2.1057 9 14 4.2089 1.6476 4.0101 10 1 5.1687 0.5166 3.9389 11 1 4.8593 2.8086 4.6691 12 1 3.0172 1.2364 4.7951 13 6 4.1785 1.4426 -1.1681 14 8 3.5749 1.5322 -2.2163 15 6 5.6814 1.3314 -1.1711 16 6 6.1875 1.2987 -2.6146 17 7 7.6485 1.1912 -2.6175 18 6 8.3185 1.1451 -3.7861 19 8 7.7104 1.1931 -4.8376 20 6 9.7918 1.0373 -3.7890 21 6 10.4924 0.9773 -2.5824 22 6 11.8674 0.8815 -2.5909 23 6 12.5542 0.8342 -3.7945 24 9 13.9015 0.7347 -3.7972 25 6 11.8631 0.8883 -4.9953 26 6 10.4884 0.9889 -4.9983 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.5293 3.6354 2.8645 35 1 5.9790 0.4154 -0.6608 36 1 6.1103 2.1905 -0.6551 37 1 5.8899 2.2148 -3.1248 38 1 5.7585 0.4396 -3.1306 39 1 8.1337 1.1533 -1.7784 40 1 9.9581 1.0091 -1.6444 41 1 12.4105 0.8388 -1.6584 42 1 12.4029 0.8507 -5.9300 43 1 9.9511 1.0306 -5.9342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:11 Heat of formation + Delta-G solvation = -99.417101 kcal Electronic energy + Delta-G solvation = -26051.468603 eV Core-core repulsion = 22010.895566 eV Total energy + Delta-G solvation = -4040.573037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.29931 -40.26656 -38.78458 -38.17796 -35.50121 -34.75166 -32.87467 -31.80406 -31.41038 -31.25438 -29.74611 -26.06915 -25.02890 -24.04076 -23.38813 -22.41940 -20.69533 -20.59925 -19.16539 -18.41471 -17.63535 -16.83226 -16.63037 -16.09615 -15.99544 -15.52533 -15.34811 -15.05409 -14.72226 -14.35146 -14.29270 -14.10378 -13.90829 -13.61301 -13.48254 -13.16424 -12.91409 -12.66632 -12.52678 -12.21918 -11.70396 -11.47597 -11.43954 -11.37181 -11.18077 -11.00287 -10.86161 -10.67524 -10.38939 -10.32086 -10.01661 -9.77444 -9.55800 -9.21353 -9.17404 -8.87022 -8.50814 -7.56828 -6.46091 -4.12721 0.38464 0.84018 2.61575 3.01993 3.12443 3.15212 3.17251 3.52171 3.80174 3.80776 4.02674 4.29532 4.46054 4.53107 4.72055 4.83210 4.90915 4.94925 5.35117 5.47816 5.52430 5.63145 5.67967 5.76026 5.78516 5.80339 5.90224 5.92989 6.06727 6.25835 6.37137 6.40307 6.42928 6.49897 6.53391 6.63076 6.66742 6.78789 7.08915 7.28855 7.45977 7.52732 7.87095 8.20755 8.28754 8.98528 9.43668 9.87682 10.55191 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.002549 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.349740 B =10981.527665 C =12386.203450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.437 5.437 5 C -0.345 4.345 6 H 0.091 0.909 7 C 0.046 3.954 8 N -0.856 5.856 9 Si 0.913 3.087 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.471 3.529 14 O -0.604 6.604 15 C -0.132 4.132 16 C 0.135 3.865 17 N -0.721 5.721 18 C 0.554 3.446 19 O -0.534 6.534 20 C -0.140 4.140 21 C -0.057 4.057 22 C -0.160 4.160 23 C 0.119 3.881 24 F -0.137 7.137 25 C -0.162 4.162 26 C -0.032 4.032 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.271 0.729 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.398 0.602 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.486 -4.483 -4.294 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.014 4.014 4 N -0.154 5.154 5 C -0.473 4.473 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.492 5.492 9 Si 0.739 3.261 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.259 3.741 14 O -0.491 6.491 15 C -0.172 4.172 16 C 0.012 3.988 17 N -0.373 5.373 18 C 0.341 3.659 19 O -0.412 6.412 20 C -0.143 4.143 21 C -0.076 4.076 22 C -0.179 4.179 23 C 0.099 3.901 24 F -0.115 7.115 25 C -0.181 4.181 26 C -0.051 4.051 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.233 0.767 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.580 -4.298 -5.397 15.232 hybrid contribution 0.804 -0.188 1.613 1.812 sum 14.384 -4.486 -3.783 15.535 Atomic orbital electron populations 1.21657 0.96562 1.00458 1.01444 1.21817 0.94735 0.99388 1.01174 1.21500 0.81363 0.94702 1.03852 1.43455 1.04843 1.62679 1.04437 1.19437 1.07742 1.32773 0.87350 0.89167 1.25342 0.96514 0.94022 1.00230 1.69863 1.31736 1.15635 1.31951 0.86105 0.78736 0.78840 0.82380 1.19162 1.20705 1.20450 1.20045 0.88540 0.81165 0.84303 1.90559 1.70318 1.56213 1.31987 1.21517 0.96091 1.04057 0.95555 1.21188 0.76733 1.03514 0.97335 1.46025 1.08883 1.74240 1.08108 1.18091 0.86587 0.77087 0.84144 1.90801 1.69468 1.49736 1.31219 1.20135 0.93735 1.06221 0.94250 1.21244 0.93400 0.95153 0.97809 1.21098 0.94794 1.04580 0.97429 1.17983 0.77003 1.00340 0.94756 1.91523 1.29363 1.93177 1.97445 1.21151 0.94750 1.04743 0.97434 1.21174 0.92680 0.92787 0.98463 0.93110 0.93621 0.92959 0.93164 0.92298 0.87448 0.92649 0.91873 0.89793 0.88906 0.90575 0.90830 0.76697 0.84272 0.83978 0.84013 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.13 -2.66 6.26 -26.73 -0.17 -2.83 16 3 C 0.11 2.56 5.05 -4.05 -0.02 2.54 16 4 N -0.44 -10.52 2.54 -114.82 -0.29 -10.81 16 5 C -0.35 -8.18 8.73 -14.93 -0.13 -8.31 16 6 H 0.09 1.99 6.95 -52.49 -0.36 1.62 16 7 C 0.05 1.08 4.95 -17.47 -0.09 1.00 16 8 N -0.86 -21.67 11.34 55.50 0.63 -21.05 16 9 Si 0.91 18.30 29.61 -169.99 -5.03 13.27 16 10 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 C 0.47 10.93 7.62 -10.98 -0.08 10.85 16 14 O -0.60 -15.60 15.54 5.55 0.09 -15.51 16 15 C -0.13 -2.35 4.44 -27.89 -0.12 -2.47 16 16 C 0.14 2.29 4.97 -4.04 -0.02 2.27 16 17 N -0.72 -9.57 5.51 -61.29 -0.34 -9.91 16 18 C 0.55 7.91 7.77 -12.38 -0.10 7.82 16 19 O -0.53 -9.71 16.34 5.31 0.09 -9.63 16 20 C -0.14 -1.54 5.87 -104.97 -0.62 -2.16 16 21 C -0.06 -0.49 9.54 -39.20 -0.37 -0.86 16 22 C -0.16 -1.28 10.01 -39.58 -0.40 -1.68 16 23 C 0.12 1.06 7.31 -39.27 -0.29 0.77 16 24 F -0.14 -1.29 17.26 2.25 0.04 -1.25 16 25 C -0.16 -1.38 10.01 -39.57 -0.40 -1.78 16 26 C -0.03 -0.32 9.59 -39.20 -0.38 -0.70 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.11 2.67 5.36 -51.93 -0.28 2.39 16 33 H 0.06 1.36 7.36 -51.93 -0.38 0.98 16 34 H 0.27 6.46 8.32 -40.82 -0.34 6.12 16 35 H 0.08 1.35 7.68 -51.93 -0.40 0.95 16 36 H 0.09 1.59 8.10 -51.92 -0.42 1.17 16 37 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 38 H 0.07 1.36 8.12 -51.92 -0.42 0.94 16 39 H 0.40 3.98 6.50 -40.82 -0.27 3.71 16 40 H 0.14 0.87 6.40 -52.49 -0.34 0.54 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.15 1.45 7.65 -52.49 -0.40 1.05 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -30.50 368.82 -7.85 -38.35 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.78 Total: 8.53 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.81 Total: 2.44 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.00 Total: -41.76 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: 0.17 Total: -25.14 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.50 -7.85 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.064 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds