Wall clock time and date at job start Tue Mar 31 2020 13:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46935 * 2 1 4 4 N 1.46496 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99966 * 180.02562 * 4 3 2 6 6 O 1.21274 * 119.99770 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99753 * 179.97438 * 5 4 3 8 8 N 1.46496 * 109.47169 * 179.97438 * 7 5 4 9 9 C 1.40006 * 120.00396 * 179.97438 * 8 7 5 10 10 C 1.38641 * 120.09903 * 0.02562 * 9 8 7 11 11 C 1.38280 * 120.00547 * 180.02562 * 10 9 8 12 12 C 1.38268 * 120.20490 * 359.97438 * 11 10 9 13 13 C 1.38241 * 120.19705 * 359.97336 * 12 11 10 14 14 C 1.38729 * 119.99523 * 0.02963 * 13 12 11 15 15 S 1.76194 * 120.10217 * 179.97438 * 14 13 12 16 16 C 1.81396 * 103.00211 * 6.23015 * 15 14 13 17 17 H 1.09001 * 109.47062 * 309.43389 * 16 15 14 18 18 C 1.53002 * 109.47208 * 69.43132 * 16 15 14 19 19 C 1.50698 * 109.47379 * 189.43443 * 16 15 14 20 20 H 1.08005 * 120.00123 * 359.97438 * 19 16 15 21 21 C 1.37880 * 120.00381 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99399 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 120.00151 * 179.97438 * 21 19 16 24 24 H 1.48502 * 109.47159 * 90.00062 * 23 21 19 25 25 H 1.48504 * 109.46742 * 209.99890 * 23 21 19 26 26 H 1.48492 * 109.47375 * 329.99711 * 23 21 19 27 27 H 1.08998 * 109.46994 * 60.00015 * 1 2 3 28 28 H 1.09003 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47228 * 300.00237 * 1 2 3 30 30 H 1.08995 * 109.47065 * 240.00407 * 2 1 3 31 31 H 1.08998 * 109.46994 * 119.99985 * 2 1 3 32 32 H 1.09001 * 109.46840 * 59.99862 * 3 2 1 33 33 H 1.09002 * 109.47226 * 300.00326 * 3 2 1 34 34 H 0.97000 * 119.99812 * 359.97438 * 4 3 2 35 35 H 1.09001 * 109.47478 * 59.99928 * 7 5 4 36 36 H 1.09002 * 109.47479 * 299.99846 * 7 5 4 37 37 H 0.97004 * 119.99890 * 359.97438 * 8 7 5 38 38 H 1.08002 * 119.99546 * 0.02562 * 10 9 8 39 39 H 1.08004 * 119.89887 * 180.27223 * 11 10 9 40 40 H 1.08005 * 119.89839 * 180.02562 * 12 11 10 41 41 H 1.07998 * 120.00627 * 180.02562 * 13 12 11 42 42 H 1.08994 * 109.47392 * 187.44181 * 18 16 15 43 43 H 1.09001 * 109.47161 * 307.43875 * 18 16 15 44 44 H 1.09001 * 109.46962 * 67.43683 * 18 16 15 45 45 H 0.97007 * 119.99369 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1788 2.6099 -0.0002 6 8 3.5724 3.6601 0.0002 7 6 5.6858 2.6098 -0.0003 8 7 6.1742 3.9910 -0.0004 9 6 7.5506 4.2469 0.0001 10 6 8.4534 3.1947 0.0001 11 6 9.8125 3.4497 0.0012 12 6 10.2759 4.7524 0.0016 13 6 9.3832 5.8079 0.0004 14 6 8.0179 5.5616 -0.0005 15 16 6.8776 6.9048 -0.0013 16 6 7.9530 8.3530 -0.1923 17 1 8.7565 8.3085 0.5429 18 6 8.5506 8.3623 -1.6008 19 6 7.1472 9.6087 0.0198 20 1 6.0933 9.5422 0.2464 21 6 7.7550 10.8425 -0.0765 22 7 9.0382 10.9235 -0.3530 23 14 6.7559 12.3989 0.1857 24 1 6.7883 12.7717 1.6228 25 1 7.3343 13.5007 -0.6247 26 1 5.3510 12.1617 -0.2326 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9565 -0.8900 34 1 3.9900 0.6026 -0.0006 35 1 6.0492 2.0963 -0.8904 36 1 6.0492 2.0957 0.8895 37 1 5.5438 4.7283 -0.0008 38 1 8.0952 2.1759 -0.0006 39 1 10.5143 2.6287 -0.0033 40 1 11.3385 4.9459 0.0019 41 1 9.7485 6.8243 0.0004 42 1 9.2962 9.1540 -1.6739 43 1 9.0215 7.4001 -1.8020 44 1 7.7598 8.5394 -2.3298 45 1 9.4658 11.7916 -0.4211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066861117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:49 Heat of formation + Delta-G solvation = -24.593271 kcal Electronic energy + Delta-G solvation = -23936.855608 eV Core-core repulsion = 20465.740352 eV Total energy + Delta-G solvation = -3471.115256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10138 -38.76372 -36.27173 -35.03899 -34.01623 -33.04327 -31.00610 -30.17604 -29.58850 -27.36184 -25.48881 -25.24082 -22.54777 -22.10547 -21.70215 -20.97909 -20.44796 -18.12682 -17.01379 -16.63625 -16.30608 -16.05362 -15.86567 -15.50126 -15.31659 -14.82311 -14.18881 -13.96704 -13.76886 -13.55088 -13.43069 -13.32316 -12.98824 -12.82682 -12.51287 -12.49058 -12.31420 -11.83579 -11.61578 -11.58295 -11.35155 -11.08757 -10.96478 -10.92006 -10.49784 -10.36125 -10.13790 -9.91025 -9.89892 -9.42116 -9.32642 -8.98725 -8.79186 -8.43001 -7.46108 -6.25346 -6.15309 -4.23013 1.77635 1.99779 2.37390 2.61385 2.75250 3.27137 3.33031 3.38885 3.64008 3.90658 4.24359 4.34341 4.36139 4.47994 4.50688 4.77361 5.04407 5.12509 5.17139 5.17941 5.20131 5.25730 5.33724 5.42276 5.55905 5.65842 5.65924 5.75056 5.90637 6.03480 6.09414 6.32742 6.55005 6.67530 6.75474 6.83465 6.86565 7.01692 7.07319 7.21929 7.42180 7.60113 7.67406 7.84129 7.90848 8.03005 8.07794 8.75910 9.40414 10.91165 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.002913 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.198180 B = 9610.375706 C =11653.552617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.117 3.883 4 N -0.732 5.732 5 C 0.506 3.494 6 O -0.523 6.523 7 C 0.112 3.888 8 N -0.736 5.736 9 C 0.222 3.778 10 C -0.192 4.192 11 C -0.095 4.095 12 C -0.159 4.159 13 C -0.088 4.088 14 C -0.129 4.129 15 S -0.175 6.175 16 C 0.099 3.901 17 H 0.050 0.950 18 C -0.138 4.138 19 C -0.509 4.509 20 H 0.066 0.934 21 C 0.070 3.930 22 N -0.887 5.887 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.271 1.271 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.401 0.599 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.417 0.583 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.134 0.866 42 H 0.088 0.912 43 H 0.020 0.980 44 H 0.040 0.960 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -23.895 0.138 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.386 5.386 5 C 0.292 3.708 6 O -0.398 6.398 7 C -0.017 4.017 8 N -0.372 5.372 9 C 0.114 3.886 10 C -0.217 4.217 11 C -0.117 4.117 12 C -0.180 4.180 13 C -0.113 4.113 14 C -0.246 4.246 15 S 0.072 5.928 16 C -0.029 4.029 17 H 0.068 0.932 18 C -0.197 4.197 19 C -0.548 4.548 20 H 0.085 0.915 21 C -0.134 4.134 22 N -0.525 5.525 23 Si 0.733 3.267 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.196 1.196 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.236 0.764 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.257 0.743 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.151 0.849 42 H 0.107 0.893 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.546 -23.054 0.210 24.588 hybrid contribution 0.951 0.611 0.005 1.130 sum -7.596 -22.443 0.216 23.694 Atomic orbital electron populations 1.21685 0.94456 1.02193 1.02512 1.21737 0.97117 0.95719 1.02740 1.21437 0.79209 0.97240 1.02786 1.45904 1.07525 1.08505 1.76629 1.20680 0.90191 0.83914 0.76043 1.90768 1.69850 1.31130 1.48030 1.20927 0.90422 0.87192 1.03176 1.44426 1.04018 1.05722 1.83053 1.17245 0.83208 0.91796 0.96305 1.20385 0.92987 0.96654 1.11635 1.20728 0.94443 0.96395 1.00152 1.20809 0.98985 0.92453 1.05775 1.21250 0.91346 1.00170 0.98537 1.21470 0.97472 0.95497 1.10133 1.85166 1.17250 1.00096 1.90330 1.21049 0.94836 0.89555 0.97411 0.93225 1.22080 1.01327 0.99588 0.96752 1.20649 0.95929 0.88640 1.49595 0.91545 1.24888 0.95118 0.98901 0.94489 1.69892 1.09684 1.25065 1.47838 0.86362 0.80242 0.81861 0.78272 1.20402 1.21003 1.19618 0.92256 0.92141 0.92252 0.91249 0.91251 0.91295 0.91294 0.76437 0.89550 0.89534 0.74286 0.86670 0.86753 0.86676 0.84870 0.89324 0.96143 0.94047 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.14 -0.64 6.05 -26.72 -0.16 -0.80 16 3 C 0.12 0.90 5.67 -4.04 -0.02 0.87 16 4 N -0.73 -5.72 5.56 -60.29 -0.33 -6.06 16 5 C 0.51 6.04 7.90 -10.99 -0.09 5.95 16 6 O -0.52 -8.83 15.67 5.56 0.09 -8.74 16 7 C 0.11 1.22 5.40 -5.20 -0.03 1.19 16 8 N -0.74 -11.81 5.66 -59.62 -0.34 -12.15 16 9 C 0.22 3.84 6.66 -83.49 -0.56 3.29 16 10 C -0.19 -2.75 9.31 -39.42 -0.37 -3.12 16 11 C -0.10 -1.34 10.04 -39.55 -0.40 -1.74 16 12 C -0.16 -2.55 10.04 -39.57 -0.40 -2.94 16 13 C -0.09 -1.70 8.01 -39.40 -0.32 -2.01 16 14 C -0.13 -2.60 5.96 -38.92 -0.23 -2.84 16 15 S -0.18 -4.03 19.75 -107.50 -2.12 -6.16 16 16 C 0.10 2.53 1.98 -27.88 -0.06 2.48 16 17 H 0.05 1.35 6.87 -51.92 -0.36 0.99 16 18 C -0.14 -3.37 8.34 37.16 0.31 -3.06 16 19 C -0.51 -14.17 8.58 -34.44 -0.30 -14.47 16 20 H 0.07 1.88 7.71 -52.48 -0.40 1.48 16 21 C 0.07 1.92 5.30 -17.82 -0.09 1.83 16 22 N -0.89 -24.76 11.41 55.43 0.63 -24.13 16 23 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.40 1.76 8.47 -40.82 -0.35 1.41 16 35 H 0.09 0.76 7.95 -51.93 -0.41 0.34 16 36 H 0.09 0.76 7.95 -51.93 -0.41 0.34 16 37 H 0.42 7.78 5.99 -40.82 -0.24 7.53 16 38 H 0.12 1.26 6.74 -52.49 -0.35 0.91 16 39 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 40 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 41 H 0.13 2.78 5.00 -52.49 -0.26 2.51 16 42 H 0.09 2.31 6.31 -51.93 -0.33 1.98 16 43 H 0.02 0.45 6.09 -51.93 -0.32 0.13 16 44 H 0.04 1.02 8.13 -51.93 -0.42 0.60 16 45 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -32.12 376.68 -10.55 -42.67 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.80 Total: 8.24 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.33 Total: -15.71 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.04 Total: -42.33 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.12 Total: -6.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.12 -10.55 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066861117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.080 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds