Wall clock time and date at job start Tue Mar 31 2020 13:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46881 * 2 1 4 4 H 1.08993 * 109.47087 * 55.00366 * 3 2 1 5 5 C 1.52999 * 109.46933 * 175.00269 * 3 2 1 6 6 N 1.46497 * 109.47210 * 294.99984 * 3 2 1 7 7 C 1.34780 * 119.99738 * 154.99838 * 6 3 2 8 8 O 1.21599 * 119.99953 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00166 * 180.02562 * 7 6 3 10 10 C 1.40192 * 120.00343 * 184.24972 * 9 7 6 11 11 C 1.38638 * 120.09266 * 325.46324 * 10 9 7 12 12 C 1.38262 * 120.00263 * 180.02562 * 11 10 9 13 13 C 1.38284 * 120.21232 * 359.97438 * 12 11 10 14 14 C 1.38210 * 120.19437 * 359.97438 * 13 12 11 15 15 C 1.38771 * 119.98618 * 0.02562 * 14 13 12 16 16 S 1.76204 * 120.10058 * 179.97438 * 15 14 13 17 17 C 1.81402 * 102.99796 * 4.48681 * 16 15 14 18 18 H 1.08998 * 109.47078 * 49.62044 * 17 16 15 19 19 C 1.53001 * 109.46881 * 169.60999 * 17 16 15 20 20 C 1.50691 * 109.47335 * 289.61081 * 17 16 15 21 21 H 1.08004 * 120.00088 * 0.02562 * 20 17 16 22 22 C 1.37884 * 120.00063 * 180.02562 * 20 17 16 23 23 N 1.31514 * 119.99787 * 359.97438 * 22 20 17 24 24 Si 1.86795 * 120.00090 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.47296 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47410 * 119.99835 * 24 22 20 27 27 H 1.48499 * 109.47412 * 240.00133 * 24 22 20 28 28 H 1.08999 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46940 * 299.99314 * 1 2 3 30 30 H 1.08992 * 109.47275 * 59.99881 * 1 2 3 31 31 H 1.09003 * 109.46940 * 240.00686 * 2 1 3 32 32 H 1.08997 * 109.47198 * 120.00587 * 2 1 3 33 33 H 1.09002 * 109.47514 * 300.00446 * 5 3 2 34 34 H 1.09002 * 109.47167 * 60.00401 * 5 3 2 35 35 H 1.09002 * 109.47431 * 180.02562 * 5 3 2 36 36 H 0.96998 * 120.00184 * 335.00816 * 6 3 2 37 37 H 0.97000 * 119.99854 * 4.24942 * 9 7 6 38 38 H 1.07994 * 119.99595 * 0.02562 * 11 10 9 39 39 H 1.08009 * 119.89354 * 179.69873 * 12 11 10 40 40 H 1.08000 * 119.90141 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.00358 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.47603 * 185.14147 * 19 17 16 43 43 H 1.08997 * 109.47838 * 305.14744 * 19 17 16 44 44 H 1.09010 * 109.46902 * 65.14302 * 19 17 16 45 45 H 0.97001 * 119.99481 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5255 3.4385 -1.2995 8 8 1.7332 4.1046 -0.3036 9 7 1.1684 4.0411 -2.4509 10 6 1.1230 5.4403 -2.5251 11 6 0.7332 6.1826 -1.4210 12 6 0.6884 7.5624 -1.4963 13 6 1.0321 8.2067 -2.6707 14 6 1.4230 7.4751 -3.7762 15 6 1.4708 6.0898 -3.7096 16 16 1.9680 5.1540 -5.1174 17 6 2.4327 6.4346 -6.3151 18 1 3.1073 7.1477 -5.8412 19 6 3.1346 5.7851 -7.5095 20 6 1.1952 7.1521 -6.7890 21 1 0.2260 6.8666 -6.4075 22 6 1.3003 8.1731 -7.7097 23 7 2.4805 8.5211 -8.1739 24 14 -0.2337 9.0630 -8.2966 25 1 -1.4271 8.4872 -7.6261 26 1 -0.1271 10.5061 -7.9627 27 1 -0.3664 8.9036 -9.7671 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8533 0.9570 1.0570 34 1 3.9994 0.9054 -0.7162 35 1 3.9281 2.4720 0.1261 36 1 1.4870 1.5661 -2.0462 37 1 0.9429 3.5066 -3.2283 38 1 0.4644 5.6830 -0.5020 39 1 0.3798 8.1388 -0.6366 40 1 0.9950 9.2847 -2.7241 41 1 1.6903 7.9814 -4.6919 42 1 3.4947 6.5609 -8.1853 43 1 3.9774 5.1908 -7.1567 44 1 2.4316 5.1408 -8.0377 45 1 2.5543 9.2391 -8.8219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066954486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:19 Heat of formation + Delta-G solvation = -20.627313 kcal Electronic energy + Delta-G solvation = -24840.225994 eV Core-core repulsion = 21369.282715 eV Total energy + Delta-G solvation = -3470.943279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46651 -38.40770 -36.60723 -34.52973 -34.07988 -32.40248 -30.61979 -30.21065 -30.05659 -28.57029 -25.42239 -24.17088 -22.91141 -22.34878 -21.52168 -20.79707 -20.47455 -18.42129 -17.32803 -16.61950 -16.42386 -15.77298 -15.37571 -15.15573 -14.69072 -14.32453 -14.10687 -14.00366 -13.77864 -13.56907 -13.41283 -13.21385 -12.97425 -12.60568 -12.30579 -12.01520 -11.80273 -11.61741 -11.56805 -11.36706 -11.28877 -11.02692 -10.92915 -10.87519 -10.54842 -10.43633 -10.22848 -10.04515 -9.69563 -9.44947 -9.16364 -9.05471 -8.87541 -8.54973 -7.79160 -6.54492 -6.16292 -4.31793 1.76493 1.97891 2.51193 2.77252 3.19314 3.27990 3.28424 3.32890 3.62117 4.22012 4.29209 4.34358 4.47054 4.75886 4.80804 5.08013 5.20530 5.32143 5.37586 5.49325 5.54313 5.59677 5.64563 5.65810 5.78283 5.86163 5.94661 6.01920 6.09376 6.11737 6.45603 6.50678 6.55518 6.65780 6.68492 6.76518 6.80662 6.98653 7.09946 7.17194 7.28033 7.54410 7.55401 7.75832 7.96990 8.01500 8.62886 8.69947 9.33010 10.81776 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018373 B = 0.003247 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.575106 B = 8620.774475 C = 9284.817822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C 0.160 3.840 4 H 0.088 0.912 5 C -0.166 4.166 6 N -0.739 5.739 7 C 0.706 3.294 8 O -0.578 6.578 9 N -0.675 5.675 10 C 0.161 3.839 11 C -0.114 4.114 12 C -0.124 4.124 13 C -0.124 4.124 14 C -0.101 4.101 15 C -0.078 4.078 16 S -0.196 6.196 17 C 0.097 3.903 18 H 0.051 0.949 19 C -0.124 4.124 20 C -0.520 4.520 21 H 0.069 0.931 22 C 0.070 3.930 23 N -0.885 5.885 24 Si 0.897 3.103 25 H -0.270 1.270 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.407 0.593 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.157 0.843 42 H 0.098 0.902 43 H 0.020 0.980 44 H 0.039 0.961 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -12.953 12.945 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.106 0.894 5 C -0.224 4.224 6 N -0.395 5.395 7 C 0.407 3.593 8 O -0.456 6.456 9 N -0.322 5.322 10 C 0.060 3.940 11 C -0.136 4.136 12 C -0.146 4.146 13 C -0.145 4.145 14 C -0.125 4.125 15 C -0.194 4.194 16 S 0.051 5.949 17 C -0.031 4.031 18 H 0.069 0.931 19 C -0.184 4.184 20 C -0.559 4.559 21 H 0.087 0.913 22 C -0.134 4.134 23 N -0.523 5.523 24 Si 0.724 3.276 25 H -0.194 1.194 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.243 0.757 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.175 0.825 42 H 0.117 0.883 43 H 0.039 0.961 44 H 0.058 0.942 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.333 -13.542 13.479 19.154 hybrid contribution -0.985 1.373 -1.081 2.006 sum -2.318 -12.169 12.399 17.527 Atomic orbital electron populations 1.21774 0.95308 1.01580 1.02385 1.21848 0.96581 0.95473 1.03023 1.20848 0.94759 0.92427 0.86490 0.89357 1.22217 0.95554 1.02951 1.01709 1.45210 1.75027 1.05134 1.14103 1.15880 0.77842 0.82046 0.83532 1.90898 1.57301 1.63299 1.34054 1.42536 1.70621 1.05495 1.13597 1.16969 1.02001 0.80942 0.94051 1.21028 1.00708 0.93743 0.98081 1.20929 1.01977 0.93904 0.97795 1.21067 1.00786 0.99609 0.93001 1.21707 0.98573 0.92079 1.00134 1.21483 1.04688 0.96819 0.96420 1.84465 1.80997 1.20188 1.09287 1.21096 0.98853 0.91402 0.91710 0.93067 1.21642 0.97513 1.00364 0.98902 1.21312 0.92340 1.16967 1.25287 0.91296 1.24977 0.96321 0.96559 0.95581 1.69879 1.22600 1.29343 1.30465 0.86433 0.83088 0.79450 0.78622 1.19436 1.20769 1.20811 0.92647 0.92567 0.92489 0.91362 0.90361 0.91817 0.92515 0.91771 0.77031 0.75743 0.84654 0.86532 0.86392 0.82523 0.88348 0.96117 0.94219 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.80 37.16 0.36 -0.69 16 2 C -0.13 -0.87 5.47 -26.73 -0.15 -1.01 16 3 C 0.16 1.50 2.57 -67.93 -0.17 1.33 16 4 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 5 C -0.17 -1.56 9.48 37.16 0.35 -1.21 16 6 N -0.74 -7.94 4.53 -58.68 -0.27 -8.21 16 7 C 0.71 10.58 8.38 -86.92 -0.73 9.86 16 8 O -0.58 -10.45 13.42 5.28 0.07 -10.38 16 9 N -0.68 -10.55 5.03 -14.06 -0.07 -10.62 16 10 C 0.16 2.98 6.32 -83.42 -0.53 2.46 16 11 C -0.11 -2.03 8.70 -39.42 -0.34 -2.37 16 12 C -0.12 -2.07 10.04 -39.56 -0.40 -2.47 16 13 C -0.12 -2.21 10.04 -39.57 -0.40 -2.61 16 14 C -0.10 -2.08 8.85 -39.39 -0.35 -2.43 16 15 C -0.08 -1.60 6.11 -38.92 -0.24 -1.83 16 16 S -0.20 -4.03 20.11 -107.50 -2.16 -6.20 16 17 C 0.10 2.29 2.02 -27.89 -0.06 2.24 16 18 H 0.05 1.31 7.34 -51.93 -0.38 0.93 16 19 C -0.12 -2.84 8.90 37.16 0.33 -2.51 16 20 C -0.52 -13.20 6.47 -34.44 -0.22 -13.43 16 21 H 0.07 1.81 7.71 -52.48 -0.40 1.40 16 22 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 23 N -0.89 -23.43 11.38 55.43 0.63 -22.80 16 24 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 7.75 -51.93 -0.40 0.03 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 3.36 8.62 -40.82 -0.35 3.00 16 37 H 0.41 5.67 7.98 -40.82 -0.33 5.35 16 38 H 0.14 2.39 6.19 -52.49 -0.32 2.07 16 39 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.16 3.58 4.82 -52.49 -0.25 3.33 16 42 H 0.10 2.42 6.22 -51.93 -0.32 2.10 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.04 0.89 8.14 -51.92 -0.42 0.46 16 45 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -28.60 375.69 -10.73 -39.33 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.95 Total: 10.96 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -2.63 Total: -12.99 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.29 Total: -41.62 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.16 Total: -6.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.60 -10.73 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066954486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.698 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds