Wall clock time and date at job start Tue Mar 31 2020 13:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47282 * 2 1 4 4 H 1.08997 * 109.47436 * 54.99923 * 3 2 1 5 5 C 1.53001 * 109.47579 * 174.99879 * 3 2 1 6 6 N 1.46501 * 109.46957 * 294.99815 * 3 2 1 7 7 C 1.34777 * 119.99832 * 154.99624 * 6 3 2 8 8 O 1.21590 * 120.00189 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99705 * 179.97438 * 7 6 3 10 10 C 1.40193 * 120.00047 * 183.74611 * 9 7 6 11 11 C 1.38634 * 120.09318 * 331.01930 * 10 9 7 12 12 C 1.38266 * 120.00849 * 179.97438 * 11 10 9 13 13 C 1.38294 * 120.20683 * 0.02562 * 12 11 10 14 14 C 1.38212 * 120.19144 * 0.02562 * 13 12 11 15 15 C 1.38773 * 119.99286 * 359.97438 * 14 13 12 16 16 S 1.76194 * 120.10598 * 180.02562 * 15 14 13 17 17 C 1.81403 * 102.99821 * 354.67394 * 16 15 14 18 18 H 1.09001 * 109.47175 * 46.78345 * 17 16 15 19 19 C 1.53000 * 109.47317 * 286.78273 * 17 16 15 20 20 C 1.50700 * 109.47211 * 166.78212 * 17 16 15 21 21 H 1.08007 * 119.99947 * 1.44093 * 20 17 16 22 22 C 1.37872 * 120.00635 * 181.43558 * 20 17 16 23 23 N 1.31514 * 120.00724 * 201.97144 * 22 20 17 24 24 Si 1.86802 * 119.99521 * 21.96927 * 22 20 17 25 25 H 1.48504 * 109.46827 * 91.44901 * 24 22 20 26 26 H 1.48498 * 109.47317 * 211.44596 * 24 22 20 27 27 H 1.48506 * 109.47273 * 331.45170 * 24 22 20 28 28 H 1.09003 * 109.47132 * 60.00266 * 1 2 3 29 29 H 1.09005 * 109.47291 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47332 * 299.99881 * 1 2 3 31 31 H 1.09000 * 109.47035 * 239.99663 * 2 1 3 32 32 H 1.09003 * 109.47132 * 119.99734 * 2 1 3 33 33 H 1.08996 * 109.46795 * 300.00023 * 5 3 2 34 34 H 1.09007 * 109.46630 * 59.99576 * 5 3 2 35 35 H 1.08996 * 109.47441 * 180.02562 * 5 3 2 36 36 H 0.96996 * 120.00041 * 335.00261 * 6 3 2 37 37 H 0.96995 * 120.00032 * 3.74642 * 9 7 6 38 38 H 1.07995 * 120.00138 * 0.02695 * 11 10 9 39 39 H 1.07999 * 119.89861 * 180.28390 * 12 11 10 40 40 H 1.07994 * 119.90490 * 179.97438 * 13 12 11 41 41 H 1.08000 * 120.00375 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.46733 * 62.42612 * 19 17 16 43 43 H 1.08994 * 109.46990 * 182.42867 * 19 17 16 44 44 H 1.09007 * 109.46753 * 302.42935 * 19 17 16 45 45 H 0.96997 * 120.00241 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0974 -1.2518 7 6 1.5256 3.4383 -1.2996 8 8 1.7332 4.1045 -0.3039 9 7 1.1695 4.0409 -2.4515 10 6 1.1139 5.4399 -2.5226 11 6 0.8252 6.1827 -1.3882 12 6 0.7712 7.5624 -1.4603 13 6 1.0041 8.2061 -2.6620 14 6 1.2916 7.4738 -3.7983 15 6 1.3478 6.0886 -3.7353 16 16 1.7147 5.1522 -5.1820 17 6 1.7698 6.4155 -6.4826 18 1 2.3677 7.2611 -6.1428 19 6 0.3486 6.8885 -6.7947 20 6 2.3886 5.8300 -7.7257 21 1 2.6948 4.7943 -7.7402 22 6 2.5640 6.6163 -8.8446 23 7 2.6843 6.0573 -10.0290 24 14 2.6306 8.4757 -8.6783 25 1 4.0403 8.9062 -8.4975 26 1 2.0750 9.1026 -9.9045 27 1 1.8296 8.8964 -7.5007 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8531 0.9571 1.0571 34 1 3.9994 0.9052 -0.7161 35 1 3.9281 2.4720 0.1262 36 1 1.4871 1.5660 -2.0462 37 1 0.9518 3.5066 -3.2312 38 1 0.6432 5.6838 -0.4479 39 1 0.5507 8.1396 -0.5744 40 1 0.9603 9.2839 -2.7128 41 1 1.4725 7.9795 -4.7353 42 1 -0.0835 7.3510 -5.9073 43 1 0.3777 7.6159 -7.6059 44 1 -0.2609 6.0355 -7.0933 45 1 2.8073 6.6105 -10.8161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066954488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:31 Heat of formation + Delta-G solvation = -12.012086 kcal Electronic energy + Delta-G solvation = -24733.881757 eV Core-core repulsion = 21263.312063 eV Total energy + Delta-G solvation = -3470.569695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63499 -38.62063 -36.72436 -34.68789 -34.12134 -32.50370 -31.52056 -30.39285 -30.15432 -28.77068 -25.32524 -24.22922 -23.10981 -22.58668 -21.56963 -20.92537 -20.70331 -18.55455 -17.77230 -16.92495 -16.59927 -15.93679 -15.50630 -15.21142 -14.82703 -14.44951 -14.15427 -14.06538 -13.93784 -13.71961 -13.60410 -13.49408 -12.94065 -12.73433 -12.50129 -12.28170 -12.11160 -12.04227 -11.75813 -11.61155 -11.38807 -11.29965 -11.13389 -10.96611 -10.61128 -10.51208 -10.31915 -9.87790 -9.77209 -9.75215 -9.26469 -9.19578 -9.14965 -8.55272 -8.00578 -6.66973 -6.34825 -4.29346 1.52502 1.67423 2.25673 2.61739 3.14368 3.14580 3.23547 3.27509 3.38867 4.06842 4.11179 4.23239 4.43061 4.72651 4.77795 4.95001 5.16588 5.21562 5.27178 5.30968 5.34675 5.49951 5.52375 5.62086 5.63620 5.75602 5.78891 5.82789 5.92225 6.07049 6.10765 6.19372 6.27381 6.32663 6.35935 6.41600 6.55123 6.70154 6.72762 6.83579 6.92767 7.09155 7.28213 7.38096 7.89346 8.15954 8.49826 8.71620 9.27379 10.76706 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.003308 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.271867 B = 8462.738917 C = 9588.430815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C 0.160 3.840 4 H 0.089 0.911 5 C -0.166 4.166 6 N -0.737 5.737 7 C 0.707 3.293 8 O -0.577 6.577 9 N -0.675 5.675 10 C 0.170 3.830 11 C -0.114 4.114 12 C -0.122 4.122 13 C -0.121 4.121 14 C -0.119 4.119 15 C -0.102 4.102 16 S -0.134 6.134 17 C 0.063 3.937 18 H 0.046 0.954 19 C -0.145 4.145 20 C -0.525 4.525 21 H 0.083 0.917 22 C 0.094 3.906 23 N -0.872 5.872 24 Si 0.860 3.140 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.257 1.257 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.409 0.591 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.131 0.869 42 H 0.033 0.967 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -7.126 18.601 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.107 0.893 5 C -0.225 4.225 6 N -0.393 5.393 7 C 0.408 3.592 8 O -0.455 6.455 9 N -0.322 5.322 10 C 0.069 3.931 11 C -0.136 4.136 12 C -0.143 4.143 13 C -0.142 4.142 14 C -0.144 4.144 15 C -0.218 4.218 16 S 0.113 5.887 17 C -0.066 4.066 18 H 0.064 0.936 19 C -0.204 4.204 20 C -0.564 4.564 21 H 0.101 0.899 22 C -0.113 4.113 23 N -0.507 5.507 24 Si 0.686 3.314 25 H -0.201 1.201 26 H -0.208 1.208 27 H -0.181 1.181 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.246 0.754 38 H 0.165 0.835 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.149 0.851 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.138 -7.839 19.066 21.026 hybrid contribution -0.158 1.880 -0.872 2.078 sum -4.296 -5.959 18.193 19.621 Atomic orbital electron populations 1.21776 0.95282 1.01658 1.02344 1.21852 0.96603 0.95394 1.03130 1.20873 0.94824 0.92508 0.86333 0.89312 1.22220 0.95471 1.02953 1.01835 1.45232 1.74716 1.05056 1.14275 1.15862 0.77800 0.82151 0.83375 1.90859 1.57335 1.63141 1.34178 1.42596 1.70440 1.05453 1.13692 1.16959 1.01727 0.81137 0.93307 1.21339 1.00128 0.93768 0.98360 1.20960 1.01856 0.94018 0.97510 1.21005 1.01033 0.99490 0.92632 1.21173 1.01632 0.92046 0.99526 1.21839 1.05342 0.97008 0.97567 1.85092 1.86525 1.18807 0.98247 1.21294 0.96976 0.93787 0.94517 0.93581 1.22431 0.97275 1.01052 0.99658 1.20259 1.43277 0.99512 0.93311 0.89894 1.24755 0.93855 0.98421 0.94277 1.69994 1.46263 1.36461 0.98015 0.87196 0.79068 0.86581 0.78561 1.20077 1.20838 1.18132 0.92482 0.92584 0.92590 0.91268 0.90302 0.91745 0.92417 0.91794 0.76852 0.75407 0.83482 0.86197 0.86305 0.85101 0.94823 0.92579 0.92088 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.80 37.15 0.36 -0.64 16 2 C -0.13 -0.83 5.47 -26.74 -0.15 -0.98 16 3 C 0.16 1.42 2.57 -67.93 -0.17 1.24 16 4 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 5 C -0.17 -1.50 9.48 37.16 0.35 -1.14 16 6 N -0.74 -7.50 4.53 -58.67 -0.27 -7.76 16 7 C 0.71 9.92 8.40 -86.91 -0.73 9.19 16 8 O -0.58 -9.71 13.11 5.29 0.07 -9.64 16 9 N -0.68 -9.82 5.12 -14.06 -0.07 -9.89 16 10 C 0.17 2.86 6.41 -83.42 -0.53 2.33 16 11 C -0.11 -1.83 8.75 -39.42 -0.34 -2.17 16 12 C -0.12 -1.76 10.04 -39.55 -0.40 -2.16 16 13 C -0.12 -1.82 10.04 -39.57 -0.40 -2.22 16 14 C -0.12 -2.09 8.22 -39.39 -0.32 -2.41 16 15 C -0.10 -1.86 6.09 -38.91 -0.24 -2.10 16 16 S -0.13 -2.68 19.98 -107.50 -2.15 -4.83 16 17 C 0.06 1.43 1.52 -27.88 -0.04 1.39 16 18 H 0.05 1.06 5.32 -51.92 -0.28 0.78 16 19 C -0.14 -3.04 8.23 37.16 0.31 -2.73 16 20 C -0.53 -14.09 8.99 -34.44 -0.31 -14.40 16 21 H 0.08 2.44 7.96 -52.48 -0.42 2.02 16 22 C 0.09 2.54 5.24 -17.82 -0.09 2.45 16 23 N -0.87 -25.14 13.96 55.43 0.77 -24.37 16 24 Si 0.86 19.99 25.88 -169.99 -4.40 15.59 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.26 -5.58 5.72 56.52 0.32 -5.25 16 28 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 3.21 8.62 -40.82 -0.35 2.86 16 37 H 0.41 5.38 7.79 -40.82 -0.32 5.06 16 38 H 0.15 2.38 5.78 -52.49 -0.30 2.08 16 39 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.13 2.39 4.94 -52.49 -0.26 2.13 16 42 H 0.03 0.63 6.41 -51.93 -0.33 0.29 16 43 H 0.06 1.20 5.12 -51.93 -0.27 0.93 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -30.39 368.61 -9.96 -40.35 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.76 Total: 9.34 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.71 Total: -14.35 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.44 Total: -42.02 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.40 Total: 15.59 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.15 Total: -4.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.39 -9.96 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066954488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.342 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds