Wall clock time and date at job start Tue Mar 31 2020 13:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 H 1.09008 * 109.46929 * 304.99373 * 3 2 1 5 5 C 1.53008 * 109.47045 * 185.00055 * 3 2 1 6 6 N 1.46498 * 109.47517 * 64.99713 * 3 2 1 7 7 C 1.34777 * 120.00036 * 205.00099 * 6 3 2 8 8 O 1.21591 * 119.99763 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99426 * 179.97438 * 7 6 3 10 10 C 1.40195 * 119.99307 * 176.18113 * 9 7 6 11 11 C 1.38630 * 120.10160 * 30.30061 * 10 9 7 12 12 C 1.38260 * 120.01288 * 179.97438 * 11 10 9 13 13 C 1.38293 * 120.20243 * 359.97438 * 12 11 10 14 14 C 1.38207 * 120.19803 * 359.74477 * 13 12 11 15 15 C 1.38776 * 119.98505 * 0.51012 * 14 13 12 16 16 S 1.76205 * 120.09978 * 179.77144 * 15 14 13 17 17 C 1.81404 * 102.99936 * 359.41857 * 16 15 14 18 18 H 1.09000 * 109.46930 * 45.17450 * 17 16 15 19 19 C 1.53001 * 109.47560 * 285.16803 * 17 16 15 20 20 C 1.50700 * 109.46677 * 165.16528 * 17 16 15 21 21 H 1.08002 * 120.00408 * 5.06165 * 20 17 16 22 22 C 1.37877 * 119.99836 * 185.05230 * 20 17 16 23 23 N 1.31512 * 120.00553 * 197.48123 * 22 20 17 24 24 Si 1.86807 * 119.99999 * 17.48522 * 22 20 17 25 25 H 1.48503 * 109.46914 * 95.44152 * 24 22 20 26 26 H 1.48500 * 109.47294 * 215.44197 * 24 22 20 27 27 H 1.48504 * 109.47047 * 335.44050 * 24 22 20 28 28 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47445 * 300.00518 * 1 2 3 30 30 H 1.09004 * 109.47024 * 60.00171 * 1 2 3 31 31 H 1.08993 * 109.47563 * 239.99917 * 2 1 3 32 32 H 1.09000 * 109.47095 * 119.99309 * 2 1 3 33 33 H 1.09002 * 109.46275 * 299.99520 * 5 3 2 34 34 H 1.08996 * 109.47222 * 59.99238 * 5 3 2 35 35 H 1.08994 * 109.47075 * 180.02562 * 5 3 2 36 36 H 0.97003 * 119.99950 * 25.00052 * 6 3 2 37 37 H 0.96995 * 120.00577 * 356.18164 * 9 7 6 38 38 H 1.07998 * 119.99580 * 359.95543 * 11 10 9 39 39 H 1.07994 * 119.90133 * 179.97438 * 12 11 10 40 40 H 1.08007 * 119.90073 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.00807 * 180.25976 * 14 13 12 42 42 H 1.08999 * 109.46683 * 64.69317 * 19 17 16 43 43 H 1.08994 * 109.47022 * 184.69415 * 19 17 16 44 44 H 1.08996 * 109.46913 * 304.69472 * 19 17 16 45 45 H 0.96996 * 120.00670 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 7 1.6523 2.0976 1.2517 7 6 1.5255 3.4386 1.2994 8 8 1.7332 4.1046 0.3036 9 7 1.1684 4.0410 2.4509 10 6 1.1142 5.4401 2.5224 11 6 0.8012 6.1823 1.3941 12 6 0.7478 7.5620 1.4668 13 6 1.0053 8.2061 2.6632 14 6 1.3125 7.4743 3.7946 15 6 1.3735 6.0894 3.7295 16 16 1.7708 5.1538 5.1688 17 6 2.0213 6.4327 6.4306 18 1 1.2199 7.1686 6.3661 19 6 3.3671 7.1224 6.1978 20 6 2.0118 5.7983 7.7976 21 1 1.9514 4.7243 7.8941 22 6 2.0803 6.5890 8.9250 23 7 2.4154 6.0586 10.0809 24 14 1.6972 8.4137 8.8108 25 1 0.2770 8.6452 9.1781 26 1 2.5778 9.1637 9.7420 27 1 1.9320 8.8829 7.4215 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.9993 0.9054 0.7162 34 1 3.8532 0.9570 -1.0570 35 1 3.9281 2.4720 -0.1253 36 1 1.4870 1.5662 2.0463 37 1 0.9489 3.5067 3.2301 38 1 0.5994 5.6828 0.4581 39 1 0.5042 8.1384 0.5867 40 1 0.9618 9.2841 2.7145 41 1 1.5089 7.9803 4.7283 42 1 3.3442 7.6513 5.2450 43 1 3.5556 7.8323 7.0030 44 1 4.1600 6.3748 6.1794 45 1 2.4633 6.6147 10.8741 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066954489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:38 Heat of formation + Delta-G solvation = -12.873013 kcal Electronic energy + Delta-G solvation = -24746.909274 eV Core-core repulsion = 21276.302247 eV Total energy + Delta-G solvation = -3470.607027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62789 -38.62481 -36.72342 -34.69147 -34.11715 -32.50006 -31.53296 -30.39767 -30.15383 -28.77319 -25.33679 -24.22936 -23.09598 -22.59510 -21.55144 -20.92448 -20.69756 -18.56202 -17.79000 -16.93585 -16.61556 -15.93176 -15.49496 -15.22240 -14.81450 -14.45349 -14.17668 -14.06473 -13.92888 -13.72859 -13.59227 -13.51253 -12.94337 -12.77105 -12.48511 -12.22314 -12.11383 -12.04287 -11.74086 -11.58432 -11.39044 -11.32901 -11.13240 -10.96649 -10.60494 -10.53390 -10.29919 -9.93817 -9.75606 -9.69546 -9.26788 -9.20051 -9.13891 -8.61922 -8.01980 -6.67070 -6.32641 -4.30734 1.52198 1.66905 2.25233 2.61996 3.13496 3.14645 3.23156 3.26368 3.38240 4.06332 4.11222 4.22617 4.43038 4.72624 4.77832 4.97355 5.16471 5.21260 5.26923 5.30769 5.34613 5.49825 5.52017 5.62055 5.63616 5.75389 5.78463 5.82727 5.92277 6.06727 6.09541 6.18734 6.28407 6.33880 6.35605 6.41462 6.54211 6.69712 6.71511 6.82885 6.92469 7.09139 7.27602 7.36476 7.89326 8.16588 8.50081 8.71115 9.27200 10.78870 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.003315 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.408608 B = 8445.164083 C = 9575.122651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C 0.160 3.840 4 H 0.089 0.911 5 C -0.166 4.166 6 N -0.737 5.737 7 C 0.707 3.293 8 O -0.578 6.578 9 N -0.675 5.675 10 C 0.170 3.830 11 C -0.112 4.112 12 C -0.122 4.122 13 C -0.120 4.120 14 C -0.121 4.121 15 C -0.101 4.101 16 S -0.135 6.135 17 C 0.061 3.939 18 H 0.048 0.952 19 C -0.145 4.145 20 C -0.520 4.520 21 H 0.084 0.916 22 C 0.090 3.910 23 N -0.878 5.878 24 Si 0.863 3.137 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.257 1.257 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.409 0.591 38 H 0.146 0.854 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.033 0.967 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 -6.961 -19.000 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.107 0.893 5 C -0.225 4.225 6 N -0.393 5.393 7 C 0.408 3.592 8 O -0.455 6.455 9 N -0.322 5.322 10 C 0.068 3.932 11 C -0.133 4.133 12 C -0.144 4.144 13 C -0.141 4.141 14 C -0.146 4.146 15 C -0.216 4.216 16 S 0.113 5.887 17 C -0.068 4.068 18 H 0.066 0.934 19 C -0.204 4.204 20 C -0.559 4.559 21 H 0.101 0.899 22 C -0.116 4.116 23 N -0.513 5.513 24 Si 0.689 3.311 25 H -0.201 1.201 26 H -0.208 1.208 27 H -0.181 1.181 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.246 0.754 38 H 0.163 0.837 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.150 0.850 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.400 -7.674 -19.454 21.050 hybrid contribution -0.406 1.852 0.896 2.097 sum -2.805 -5.821 -18.558 19.651 Atomic orbital electron populations 1.21776 0.95279 1.01659 1.02349 1.21852 0.96607 0.95393 1.03123 1.20875 0.94814 0.92507 0.86343 0.89318 1.22219 0.95480 1.02939 1.01828 1.45231 1.74728 1.05061 1.14268 1.15861 0.77791 0.82147 0.83385 1.90870 1.57340 1.63206 1.34119 1.42586 1.70470 1.05426 1.13739 1.16941 1.01749 0.81161 0.93326 1.21283 0.99988 0.93771 0.98309 1.20951 1.01862 0.93996 0.97594 1.21006 1.00842 0.99499 0.92713 1.21206 1.01721 0.92091 0.99567 1.21856 1.05092 0.97004 0.97690 1.85082 1.85243 1.17829 1.00549 1.21336 0.96821 0.93468 0.95136 0.93376 1.22432 0.98679 1.00150 0.99137 1.20305 1.53945 0.95566 0.86078 0.89855 1.24783 0.93537 0.98332 0.94910 1.69939 1.44161 1.37062 1.00166 0.87124 0.79052 0.85921 0.78976 1.20138 1.20763 1.18095 0.92583 0.92477 0.92591 0.90306 0.91272 0.92430 0.91743 0.91804 0.76852 0.75423 0.83682 0.86188 0.86294 0.85002 0.94787 0.92574 0.92131 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.80 37.16 0.36 -0.65 16 2 C -0.13 -0.83 5.47 -26.73 -0.15 -0.98 16 3 C 0.16 1.41 2.57 -67.93 -0.17 1.24 16 4 H 0.09 0.92 7.58 -51.92 -0.39 0.53 16 5 C -0.17 -1.49 9.48 37.16 0.35 -1.13 16 6 N -0.74 -7.49 4.53 -58.67 -0.27 -7.75 16 7 C 0.71 9.91 8.40 -86.92 -0.73 9.18 16 8 O -0.58 -9.72 13.18 5.29 0.07 -9.65 16 9 N -0.68 -9.81 5.10 -14.06 -0.07 -9.89 16 10 C 0.17 2.85 6.39 -83.42 -0.53 2.32 16 11 C -0.11 -1.78 8.73 -39.43 -0.34 -2.13 16 12 C -0.12 -1.77 10.04 -39.55 -0.40 -2.16 16 13 C -0.12 -1.80 10.04 -39.57 -0.40 -2.20 16 14 C -0.12 -2.13 8.32 -39.39 -0.33 -2.45 16 15 C -0.10 -1.84 6.12 -38.91 -0.24 -2.08 16 16 S -0.13 -2.69 20.01 -107.50 -2.15 -4.84 16 17 C 0.06 1.38 1.50 -27.88 -0.04 1.34 16 18 H 0.05 1.10 5.25 -51.92 -0.27 0.82 16 19 C -0.14 -3.07 8.19 37.16 0.30 -2.77 16 20 C -0.52 -13.92 8.99 -34.44 -0.31 -14.23 16 21 H 0.08 2.44 7.96 -52.49 -0.42 2.02 16 22 C 0.09 2.46 5.30 -17.82 -0.09 2.36 16 23 N -0.88 -25.36 13.96 55.43 0.77 -24.59 16 24 Si 0.86 19.99 25.82 -169.99 -4.39 15.60 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.26 -5.55 5.65 56.52 0.32 -5.23 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.40 3.21 8.62 -40.82 -0.35 2.86 16 37 H 0.41 5.38 7.83 -40.82 -0.32 5.06 16 38 H 0.15 2.34 5.88 -52.49 -0.31 2.03 16 39 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.13 2.40 4.70 -52.48 -0.25 2.16 16 42 H 0.03 0.64 6.22 -51.93 -0.32 0.32 16 43 H 0.06 1.21 5.29 -51.93 -0.27 0.93 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -30.43 368.46 -9.95 -40.38 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.76 Total: 9.50 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.71 Total: -14.32 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.44 Total: -42.22 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.39 Total: 15.60 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.15 Total: -4.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.43 -9.95 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066954489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.508 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds