Wall clock time and date at job start Tue Mar 31 2020 13:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46724 * 2 1 4 4 N 1.46500 * 109.46845 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.00167 * 269.99829 * 4 3 2 6 6 C 1.34784 * 119.99767 * 90.00406 * 4 3 2 7 7 O 1.21589 * 119.99689 * 359.97438 * 6 4 3 8 8 N 1.34771 * 119.99622 * 179.97438 * 6 4 3 9 9 C 1.40196 * 119.99986 * 185.15639 * 8 6 4 10 10 C 1.38634 * 120.09357 * 327.71382 * 9 8 6 11 11 C 1.38260 * 120.00712 * 179.72428 * 10 9 8 12 12 C 1.38296 * 120.20698 * 0.27225 * 11 10 9 13 13 C 1.38200 * 120.19524 * 0.02921 * 12 11 10 14 14 C 1.38778 * 119.98826 * 359.96982 * 13 12 11 15 15 S 1.76203 * 120.10275 * 180.02562 * 14 13 12 16 16 C 1.81409 * 102.99884 * 354.74870 * 15 14 13 17 17 H 1.09004 * 109.46919 * 51.45962 * 16 15 14 18 18 C 1.52991 * 109.46982 * 291.45294 * 16 15 14 19 19 C 1.50703 * 109.46813 * 171.45260 * 16 15 14 20 20 H 1.08003 * 119.99998 * 359.97438 * 19 16 15 21 21 C 1.37877 * 119.99634 * 180.02562 * 19 16 15 22 22 N 1.31519 * 120.00205 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99728 * 180.02562 * 21 19 16 24 24 H 1.48505 * 109.46944 * 89.99995 * 23 21 19 25 25 H 1.48508 * 109.46842 * 209.99351 * 23 21 19 26 26 H 1.48489 * 109.47256 * 329.99604 * 23 21 19 27 27 H 1.08995 * 109.47734 * 60.00133 * 1 2 3 28 28 H 1.09002 * 109.46863 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47090 * 299.99464 * 1 2 3 30 30 H 1.09000 * 109.47090 * 240.00536 * 2 1 3 31 31 H 1.08995 * 109.47250 * 120.00086 * 2 1 3 32 32 H 1.09000 * 109.46900 * 60.00419 * 3 2 1 33 33 H 1.08995 * 109.47327 * 300.00039 * 3 2 1 34 34 H 1.09001 * 109.47158 * 270.00094 * 5 4 3 35 35 H 1.08997 * 109.47139 * 30.00626 * 5 4 3 36 36 H 1.09002 * 109.47070 * 149.99994 * 5 4 3 37 37 H 0.97006 * 120.00442 * 5.15669 * 8 6 4 38 38 H 1.07995 * 119.99528 * 359.97438 * 10 9 8 39 39 H 1.08003 * 119.89759 * 180.25535 * 11 10 9 40 40 H 1.08001 * 119.89654 * 179.97438 * 12 11 10 41 41 H 1.08007 * 120.00788 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.47093 * 64.05861 * 18 16 15 43 43 H 1.09000 * 109.47227 * 184.05389 * 18 16 15 44 44 H 1.09001 * 109.47391 * 304.05263 * 18 16 15 45 45 H 0.96993 * 120.00165 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2369 1.4428 1.2696 6 6 4.1793 1.4425 -1.1664 7 8 3.5717 1.4420 -2.2196 8 7 5.5270 1.4431 -1.1658 9 6 6.2285 1.5521 -2.3747 10 6 5.6986 1.0131 -3.5369 11 6 6.3892 1.1267 -4.7293 12 6 7.6117 1.7722 -4.7665 13 6 8.1507 2.3072 -3.6119 14 6 7.4644 2.1979 -2.4106 15 16 8.1485 2.8794 -0.9368 16 6 9.7842 3.4521 -1.4730 17 1 9.6778 4.0761 -2.3604 18 6 10.6649 2.2448 -1.8009 19 6 10.4225 4.2543 -0.3684 20 1 9.8966 4.4051 0.5628 21 6 11.6774 4.7968 -0.5471 22 7 12.3176 4.6137 -1.6813 23 14 12.4689 5.7907 0.8223 24 1 13.2564 4.8865 1.6985 25 1 13.3676 6.8161 0.2338 26 1 11.4122 6.4594 1.6229 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 4.4184 2.4706 1.5842 35 1 3.6476 0.9290 2.0291 36 1 5.1894 0.9290 1.1397 37 1 6.0117 1.3680 -0.3289 38 1 4.7444 0.5080 -3.5116 39 1 5.9728 0.7097 -5.6344 40 1 8.1471 1.8576 -5.7006 41 1 9.1059 2.8103 -3.6444 42 1 10.2407 1.7048 -2.6474 43 1 11.6690 2.5854 -2.0536 44 1 10.7126 1.5840 -0.9353 45 1 13.2006 4.9950 -1.8069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066955082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:14 Heat of formation + Delta-G solvation = -4.739998 kcal Electronic energy + Delta-G solvation = -24804.125393 eV Core-core repulsion = 21333.871040 eV Total energy + Delta-G solvation = -3470.254353 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65367 -38.49517 -36.23095 -34.81041 -34.17087 -33.23883 -31.09299 -29.91944 -29.19630 -27.58578 -25.82714 -25.39392 -22.82337 -22.47431 -21.72018 -21.16198 -19.78969 -18.48244 -17.49419 -16.79114 -16.13018 -15.94509 -15.48991 -15.25275 -15.09226 -14.43192 -14.33864 -13.97598 -13.72486 -13.49447 -13.36089 -13.19270 -12.79554 -12.62483 -12.54593 -12.24339 -12.04194 -11.91706 -11.70497 -11.56760 -11.37095 -11.06716 -11.02262 -10.90359 -10.62557 -10.47515 -10.27834 -10.06901 -9.73365 -9.47920 -9.08349 -8.96587 -8.83906 -8.53378 -7.90419 -6.55452 -6.24897 -4.34578 1.62911 1.78954 2.39605 2.62122 3.16282 3.19372 3.26224 3.30200 3.59185 3.86950 4.17780 4.26704 4.71122 4.75512 4.85779 5.05695 5.07043 5.16528 5.23943 5.35616 5.39461 5.45259 5.50896 5.58384 5.62756 5.76783 5.84727 5.89526 5.92549 6.02140 6.28310 6.31580 6.52995 6.54096 6.64416 6.71626 6.77552 6.82434 6.90323 6.94355 7.27714 7.38597 7.57099 7.74074 7.85227 7.98658 8.52481 8.64275 9.29768 10.80793 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.003287 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.110061 B = 8516.339095 C =10004.317244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.133 3.867 4 N -0.632 5.632 5 C 0.076 3.924 6 C 0.707 3.293 7 O -0.576 6.576 8 N -0.674 5.674 9 C 0.164 3.836 10 C -0.112 4.112 11 C -0.124 4.124 12 C -0.120 4.120 13 C -0.116 4.116 14 C -0.091 4.091 15 S -0.176 6.176 16 C 0.100 3.900 17 H 0.051 0.949 18 C -0.146 4.146 19 C -0.510 4.510 20 H 0.066 0.934 21 C 0.071 3.929 22 N -0.885 5.885 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.271 1.271 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.409 0.591 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.138 0.862 42 H 0.022 0.978 43 H 0.096 0.904 44 H 0.038 0.962 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.206 -8.654 2.492 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.010 3.990 4 N -0.369 5.369 5 C -0.068 4.068 6 C 0.409 3.591 7 O -0.453 6.453 8 N -0.323 5.323 9 C 0.063 3.937 10 C -0.134 4.134 11 C -0.146 4.146 12 C -0.140 4.140 13 C -0.140 4.140 14 C -0.206 4.206 15 S 0.071 5.929 16 C -0.027 4.027 17 H 0.069 0.931 18 C -0.206 4.206 19 C -0.550 4.550 20 H 0.085 0.915 21 C -0.134 4.134 22 N -0.523 5.523 23 Si 0.733 3.267 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.247 0.753 38 H 0.159 0.841 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.041 0.959 43 H 0.115 0.885 44 H 0.057 0.943 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.923 -8.433 2.925 19.133 hybrid contribution 1.373 0.417 -0.065 1.436 sum -15.550 -8.016 2.860 17.727 Atomic orbital electron populations 1.21681 0.95154 1.01858 1.01929 1.21916 0.96081 0.97453 1.02528 1.21406 0.77478 0.96871 1.03246 1.47040 1.06763 1.78350 1.04725 1.21793 0.96928 1.02440 0.85620 1.15802 0.81418 0.77760 0.84074 1.90871 1.67639 1.57318 1.29485 1.42727 1.04742 1.75657 1.09189 1.16985 0.91634 0.99387 0.85742 1.21203 1.00864 1.00025 0.91261 1.20938 0.95258 1.01038 0.97360 1.21022 0.96009 0.99216 0.97797 1.21306 1.00628 1.00929 0.91187 1.21763 0.97609 1.02113 0.99155 1.85011 1.23398 1.71671 1.12818 1.21073 0.85355 0.96286 0.99966 0.93071 1.22167 1.03611 0.96394 0.98394 1.20620 1.01582 1.32666 1.00116 0.91544 1.24890 0.96432 0.95925 0.96122 1.69854 1.14050 1.44385 1.24003 0.86354 0.79205 0.79673 0.81453 1.20356 1.20928 1.19612 0.92403 0.92570 0.92700 0.91424 0.92071 0.90558 0.89641 0.91957 0.90608 0.91389 0.75267 0.84071 0.86284 0.86253 0.84392 0.95885 0.88532 0.94265 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16 2 C -0.14 -1.22 6.26 -26.73 -0.17 -1.39 16 3 C 0.13 1.29 5.41 -4.04 -0.02 1.27 16 4 N -0.63 -7.40 2.87 -187.35 -0.54 -7.94 16 5 C 0.08 0.67 10.25 59.84 0.61 1.28 16 6 C 0.71 10.95 8.14 -86.92 -0.71 10.25 16 7 O -0.58 -10.39 13.18 5.29 0.07 -10.32 16 8 N -0.67 -10.72 4.95 -14.06 -0.07 -10.79 16 9 C 0.16 2.95 6.36 -83.42 -0.53 2.42 16 10 C -0.11 -1.91 8.72 -39.43 -0.34 -2.25 16 11 C -0.12 -1.92 10.04 -39.55 -0.40 -2.32 16 12 C -0.12 -1.94 10.04 -39.57 -0.40 -2.34 16 13 C -0.12 -2.19 8.03 -39.40 -0.32 -2.51 16 14 C -0.09 -1.77 6.06 -38.91 -0.24 -2.00 16 15 S -0.18 -3.69 20.07 -107.50 -2.16 -5.85 16 16 C 0.10 2.43 1.98 -27.89 -0.06 2.37 16 17 H 0.05 1.33 6.98 -51.92 -0.36 0.97 16 18 C -0.15 -3.37 8.59 37.15 0.32 -3.05 16 19 C -0.51 -13.42 8.58 -34.44 -0.30 -13.71 16 20 H 0.07 1.75 7.71 -52.48 -0.40 1.35 16 21 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 22 N -0.89 -23.78 11.30 55.43 0.63 -23.16 16 23 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.09 0.97 7.42 -51.93 -0.39 0.59 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 36 H 0.07 0.60 6.29 -51.93 -0.33 0.27 16 37 H 0.41 5.94 5.57 -40.82 -0.23 5.71 16 38 H 0.14 2.42 5.99 -52.49 -0.31 2.11 16 39 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.14 2.77 4.77 -52.48 -0.25 2.51 16 42 H 0.02 0.47 5.78 -51.93 -0.30 0.17 16 43 H 0.10 2.43 5.97 -51.93 -0.31 2.11 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -29.41 370.94 -10.42 -39.83 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.66 Total: 8.18 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.26 Total: -10.89 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.02 Total: -41.88 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -2.16 Total: -5.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.41 -10.42 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066955082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.093 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds