Wall clock time and date at job start Tue Mar 31 2020 13:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47435 * 2 1 4 4 C 1.53009 * 109.46765 * 239.99991 * 2 1 3 5 5 S 1.81400 * 109.46950 * 120.00543 * 2 1 3 6 6 C 1.81397 * 103.00111 * 59.99853 * 5 2 1 7 7 C 1.53001 * 109.47185 * 180.02562 * 6 5 2 8 8 N 1.46500 * 109.47169 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99942 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00301 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00354 * 179.97438 * 9 8 7 12 12 C 1.39236 * 120.00494 * 184.29036 * 11 9 8 13 13 C 1.39483 * 119.83378 * 324.71061 * 12 11 9 14 14 C 1.36374 * 120.16935 * 180.25449 * 13 12 11 15 15 C 1.40865 * 119.82738 * 359.49718 * 14 13 12 16 16 C 1.41161 * 120.16888 * 180.23125 * 15 14 13 17 17 H 1.07993 * 120.00521 * 215.04579 * 16 15 14 18 18 C 1.39897 * 119.99555 * 35.03560 * 16 15 14 19 19 N 1.30887 * 119.99893 * 355.55017 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 175.54634 * 18 16 15 21 21 H 1.48499 * 109.47076 * 90.00602 * 20 18 16 22 22 H 1.48506 * 109.46778 * 210.00445 * 20 18 16 23 23 H 1.48496 * 109.47072 * 330.00160 * 20 18 16 24 24 C 1.40874 * 119.67483 * 0.52187 * 15 14 13 25 25 C 1.36371 * 119.82530 * 359.73229 * 24 15 14 26 26 H 1.09005 * 109.46804 * 299.99707 * 1 2 3 27 27 H 1.09000 * 109.47082 * 59.99203 * 1 2 3 28 28 H 1.08991 * 109.47458 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47217 * 300.00494 * 3 2 1 31 31 H 1.09005 * 109.46886 * 60.00343 * 3 2 1 32 32 H 1.08994 * 109.47358 * 300.00640 * 4 2 1 33 33 H 1.09000 * 109.46663 * 60.00549 * 4 2 1 34 34 H 1.08995 * 109.46558 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47597 * 59.99671 * 6 5 2 36 36 H 1.08996 * 109.46985 * 299.99598 * 6 5 2 37 37 H 1.08999 * 109.47134 * 59.99372 * 7 6 5 38 38 H 1.09002 * 109.47119 * 300.00020 * 7 6 5 39 39 H 0.96993 * 120.00241 * 359.97438 * 8 7 6 40 40 H 0.97008 * 119.99346 * 4.29863 * 11 9 8 41 41 H 1.08004 * 119.91370 * 359.97438 * 13 12 11 42 42 H 1.08002 * 120.08477 * 179.74896 * 14 13 12 43 43 H 0.97003 * 119.99756 * 179.97438 * 19 18 16 44 44 H 1.07995 * 120.08758 * 179.70836 * 24 15 14 45 45 H 1.07996 * 119.92072 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 2.1347 -0.8553 1.4811 6 6 1.4374 -2.5205 1.3039 7 6 1.8623 -3.3808 2.4957 8 7 1.2987 -4.7255 2.3529 9 6 1.5425 -5.6615 3.2915 10 8 2.2297 -5.3897 4.2569 11 7 1.0236 -6.8984 3.1604 12 6 1.2003 -7.8384 4.1723 13 6 2.3912 -7.8610 4.8981 14 6 2.5737 -8.7820 5.8872 15 6 1.5514 -9.7052 6.1821 16 6 1.7306 -10.6585 7.2077 17 1 1.3079 -11.6471 7.1060 18 6 2.4561 -10.3227 8.3557 19 7 3.0421 -9.1554 8.4414 20 14 2.5884 -11.5400 9.7663 21 1 3.7813 -12.4016 9.5664 22 1 2.7210 -10.8006 11.0474 23 1 1.3683 -12.3854 9.8067 24 6 0.3516 -9.6765 5.4445 25 6 0.1858 -8.7530 4.4549 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4423 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6766 -1.7489 -1.2494 33 1 1.6767 -0.2074 -2.1393 34 1 3.1299 -0.7217 -1.2491 35 1 1.8030 -2.9713 0.3812 36 1 0.3498 -2.4574 1.2713 37 1 1.4964 -2.9299 3.4181 38 1 2.9500 -3.4439 2.5288 39 1 0.7502 -4.9422 1.5829 40 1 0.5271 -7.1338 2.3610 41 1 3.1727 -7.1502 4.6732 42 1 3.4979 -8.8009 6.4456 43 1 3.5448 -8.9224 9.2377 44 1 -0.4347 -10.3842 5.6618 45 1 -0.7332 -8.7298 3.8881 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067255513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:07 Heat of formation + Delta-G solvation = -20.126574 kcal Electronic energy + Delta-G solvation = -23583.801958 eV Core-core repulsion = 20112.880393 eV Total energy + Delta-G solvation = -3470.921565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.88488 -37.48971 -36.72934 -35.32732 -34.28251 -32.87571 -30.77118 -29.41930 -28.67168 -27.85998 -27.73830 -24.96492 -23.28744 -21.48058 -21.04354 -20.91458 -20.02418 -18.00063 -17.23016 -16.76187 -16.40548 -15.82401 -15.63150 -15.08924 -14.72360 -14.71540 -14.45462 -14.28549 -13.97480 -13.83874 -13.10238 -12.93933 -12.84960 -12.63456 -12.30234 -12.26135 -12.06274 -11.91779 -11.80500 -11.62492 -11.55116 -11.40664 -11.37957 -11.12342 -10.87863 -10.45097 -10.08401 -9.94831 -9.83257 -9.56126 -9.07023 -8.90483 -8.71031 -7.98532 -7.45882 -6.81118 -6.53142 -4.27002 1.18534 2.16018 2.73846 3.09691 3.13340 3.14610 3.17213 3.23897 3.73591 4.03701 4.23612 4.24229 4.46933 4.57461 4.59905 4.67950 4.78857 5.03151 5.04356 5.12396 5.24065 5.30239 5.31877 5.32890 5.57545 5.63180 5.70619 5.71873 5.73818 5.77291 6.17784 6.41753 6.52978 6.83757 6.88198 7.10505 7.20751 7.33855 7.42941 7.71093 7.87824 8.07631 8.15572 8.35711 8.50379 8.73933 8.98820 8.99844 9.14375 10.38002 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033786 B = 0.001913 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.540948 B =14631.194235 C =15159.223561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C -0.128 4.128 4 C -0.145 4.145 5 S -0.229 6.229 6 C -0.104 4.104 7 C 0.158 3.842 8 N -0.752 5.752 9 C 0.695 3.305 10 O -0.570 6.570 11 N -0.668 5.668 12 C 0.024 3.976 13 C -0.094 4.094 14 C -0.143 4.143 15 C 0.098 3.902 16 C -0.464 4.464 17 H 0.075 0.925 18 C 0.068 3.932 19 N -0.808 5.808 20 Si 0.915 3.085 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.203 4.203 25 C -0.116 4.116 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.391 0.609 40 H 0.390 0.610 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.278 0.722 44 H 0.096 0.904 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 16.521 -18.693 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.187 4.187 4 C -0.203 4.203 5 S -0.002 6.002 6 C -0.253 4.253 7 C 0.033 3.967 8 N -0.410 5.410 9 C 0.395 3.605 10 O -0.446 6.446 11 N -0.314 5.314 12 C -0.069 4.069 13 C -0.114 4.114 14 C -0.163 4.163 15 C 0.095 3.905 16 C -0.495 4.495 17 H 0.093 0.907 18 C -0.147 4.147 19 N -0.436 5.436 20 Si 0.740 3.260 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.223 4.223 25 C -0.137 4.137 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.224 0.776 40 H 0.223 0.777 41 H 0.127 0.873 42 H 0.148 0.852 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.718 17.338 -16.779 24.280 hybrid contribution -1.367 -1.103 -1.050 2.046 sum -4.085 16.235 -17.829 24.457 Atomic orbital electron populations 1.22144 0.92688 1.02507 1.03018 1.22720 0.98404 0.98532 0.95039 1.21653 1.01905 0.92324 1.02769 1.22143 1.02239 1.00024 0.95936 1.87006 1.70380 1.09573 1.33195 1.23585 1.03749 0.95560 1.02362 1.20682 0.99278 0.80464 0.96316 1.45051 1.57872 1.11441 1.26656 1.15983 0.81313 0.80432 0.82759 1.90955 1.42188 1.80032 1.31459 1.42086 1.57964 1.10054 1.21268 1.17089 0.96778 0.95764 0.97233 1.20679 0.95224 0.98333 0.97170 1.21306 1.00351 0.97427 0.97188 1.17726 0.89780 0.92406 0.90559 1.19452 1.29595 0.99466 1.00998 0.90718 1.25889 0.93252 0.95531 1.00000 1.69801 1.25482 1.19889 1.28380 0.86216 0.79431 0.80539 0.79854 1.19579 1.20348 1.18817 1.20666 0.98028 1.02246 1.01368 1.20044 0.95719 0.98376 0.99561 0.91223 0.91673 0.92428 0.91556 0.91114 0.91557 0.92434 0.91675 0.91225 0.89435 0.89434 0.90747 0.90762 0.77577 0.77670 0.87335 0.85227 0.91128 0.88577 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.32 37.16 0.31 -0.53 16 2 C -0.04 -0.24 0.95 -90.62 -0.09 -0.33 16 3 C -0.13 -0.74 8.48 37.15 0.32 -0.43 16 4 C -0.14 -0.83 8.32 37.16 0.31 -0.52 16 5 S -0.23 -2.14 20.65 -107.50 -2.22 -4.36 16 6 C -0.10 -0.87 5.17 37.16 0.19 -0.68 16 7 C 0.16 1.89 5.68 -4.04 -0.02 1.87 16 8 N -0.75 -9.52 5.56 -65.23 -0.36 -9.89 16 9 C 0.69 12.73 8.39 -86.92 -0.73 12.00 16 10 O -0.57 -13.36 13.76 5.29 0.07 -13.28 16 11 N -0.67 -11.89 5.31 -14.10 -0.07 -11.97 16 12 C 0.02 0.54 6.31 -83.57 -0.53 0.02 16 13 C -0.09 -2.40 8.61 -39.79 -0.34 -2.75 16 14 C -0.14 -3.92 8.61 -39.26 -0.34 -4.26 16 15 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 16 C -0.46 -12.60 9.02 -37.85 -0.34 -12.95 16 17 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 18 C 0.07 1.79 5.42 -17.33 -0.09 1.70 16 19 N -0.81 -22.07 10.61 55.55 0.59 -21.48 16 20 Si 0.91 19.49 29.56 -169.99 -5.03 14.47 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.20 -4.98 9.74 -39.26 -0.38 -5.36 16 25 C -0.12 -2.58 9.90 -39.79 -0.39 -2.97 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.33 6.68 -51.93 -0.35 -0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.33 6.68 -51.93 -0.35 -0.02 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.64 7.00 -51.92 -0.36 0.27 16 36 H 0.09 0.65 6.99 -51.93 -0.36 0.28 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.39 3.49 8.49 -40.82 -0.35 3.15 16 40 H 0.39 5.25 8.83 -40.82 -0.36 4.89 16 41 H 0.11 2.83 6.22 -52.48 -0.33 2.50 16 42 H 0.13 3.73 6.15 -52.49 -0.32 3.40 16 43 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 44 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 45 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -32.29 377.83 -11.03 -43.32 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.97 Total: 10.60 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.73 Total: -13.11 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.15 Total: -43.33 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.07 Total: -13.28 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -2.22 Total: -4.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.29 -11.03 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067255513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.192 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds