Wall clock time and date at job start Tue Mar 31 2020 13:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47435 * 2 1 4 4 C 1.53009 * 109.46765 * 239.99991 * 2 1 3 5 5 S 1.81400 * 109.46950 * 120.00543 * 2 1 3 6 6 C 1.81397 * 103.00111 * 59.99853 * 5 2 1 7 7 C 1.53001 * 109.47185 * 180.02562 * 6 5 2 8 8 N 1.46500 * 109.47169 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99942 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00301 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00354 * 179.97438 * 9 8 7 12 12 C 1.39236 * 120.00494 * 184.29036 * 11 9 8 13 13 C 1.39483 * 119.83378 * 324.71061 * 12 11 9 14 14 C 1.36374 * 120.16935 * 180.25449 * 13 12 11 15 15 C 1.40865 * 119.82738 * 359.49718 * 14 13 12 16 16 C 1.41161 * 120.16888 * 180.23125 * 15 14 13 17 17 H 1.07993 * 120.00521 * 215.04579 * 16 15 14 18 18 C 1.39897 * 119.99555 * 35.03560 * 16 15 14 19 19 N 1.30887 * 119.99893 * 355.55017 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 175.54634 * 18 16 15 21 21 H 1.48499 * 109.47076 * 90.00602 * 20 18 16 22 22 H 1.48506 * 109.46778 * 210.00445 * 20 18 16 23 23 H 1.48496 * 109.47072 * 330.00160 * 20 18 16 24 24 C 1.40874 * 119.67483 * 0.52187 * 15 14 13 25 25 C 1.36371 * 119.82530 * 359.73229 * 24 15 14 26 26 H 1.09005 * 109.46804 * 299.99707 * 1 2 3 27 27 H 1.09000 * 109.47082 * 59.99203 * 1 2 3 28 28 H 1.08991 * 109.47458 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47217 * 300.00494 * 3 2 1 31 31 H 1.09005 * 109.46886 * 60.00343 * 3 2 1 32 32 H 1.08994 * 109.47358 * 300.00640 * 4 2 1 33 33 H 1.09000 * 109.46663 * 60.00549 * 4 2 1 34 34 H 1.08995 * 109.46558 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47597 * 59.99671 * 6 5 2 36 36 H 1.08996 * 109.46985 * 299.99598 * 6 5 2 37 37 H 1.08999 * 109.47134 * 59.99372 * 7 6 5 38 38 H 1.09002 * 109.47119 * 300.00020 * 7 6 5 39 39 H 0.96993 * 120.00241 * 359.97438 * 8 7 6 40 40 H 0.97008 * 119.99346 * 4.29863 * 11 9 8 41 41 H 1.08004 * 119.91370 * 359.97438 * 13 12 11 42 42 H 1.08002 * 120.08477 * 179.74896 * 14 13 12 43 43 H 0.97003 * 119.99756 * 179.97438 * 19 18 16 44 44 H 1.07995 * 120.08758 * 179.70836 * 24 15 14 45 45 H 1.07996 * 119.92072 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 2.1347 -0.8553 1.4811 6 6 1.4374 -2.5205 1.3039 7 6 1.8623 -3.3808 2.4957 8 7 1.2987 -4.7255 2.3529 9 6 1.5425 -5.6615 3.2915 10 8 2.2297 -5.3897 4.2569 11 7 1.0236 -6.8984 3.1604 12 6 1.2003 -7.8384 4.1723 13 6 2.3912 -7.8610 4.8981 14 6 2.5737 -8.7820 5.8872 15 6 1.5514 -9.7052 6.1821 16 6 1.7306 -10.6585 7.2077 17 1 1.3079 -11.6471 7.1060 18 6 2.4561 -10.3227 8.3557 19 7 3.0421 -9.1554 8.4414 20 14 2.5884 -11.5400 9.7663 21 1 3.7813 -12.4016 9.5664 22 1 2.7210 -10.8006 11.0474 23 1 1.3683 -12.3854 9.8067 24 6 0.3516 -9.6765 5.4445 25 6 0.1858 -8.7530 4.4549 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4423 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6766 -1.7489 -1.2494 33 1 1.6767 -0.2074 -2.1393 34 1 3.1299 -0.7217 -1.2491 35 1 1.8030 -2.9713 0.3812 36 1 0.3498 -2.4574 1.2713 37 1 1.4964 -2.9299 3.4181 38 1 2.9500 -3.4439 2.5288 39 1 0.7502 -4.9422 1.5829 40 1 0.5271 -7.1338 2.3610 41 1 3.1727 -7.1502 4.6732 42 1 3.4979 -8.8009 6.4456 43 1 3.5448 -8.9224 9.2377 44 1 -0.4347 -10.3842 5.6618 45 1 -0.7332 -8.7298 3.8881 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067255513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:06 Heat of formation + Delta-G solvation = -39.597963 kcal Electronic energy + Delta-G solvation = -23584.646301 eV Core-core repulsion = 20112.880393 eV Total energy + Delta-G solvation = -3471.765908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42968 -39.28238 -37.21543 -36.66332 -35.99866 -34.69670 -31.98166 -31.34735 -30.39477 -28.28654 -28.26961 -26.76486 -24.41915 -23.20382 -22.77781 -21.69534 -21.45289 -19.47081 -19.19106 -18.26312 -17.17264 -17.05605 -16.88376 -16.60774 -15.81083 -15.67025 -15.57235 -15.31537 -15.15736 -14.97547 -14.76521 -14.46918 -13.94105 -13.70553 -13.45919 -13.43089 -13.29365 -13.12009 -12.87969 -12.80146 -12.64798 -12.50945 -12.40754 -12.29154 -12.02144 -11.91844 -11.78579 -11.68605 -11.32968 -10.92016 -10.68244 -10.55283 -10.18134 -9.42293 -8.71864 -8.68817 -8.47057 -6.30062 0.48608 0.88634 1.16036 1.39417 1.47597 1.52210 1.55324 1.87679 2.18037 2.25696 2.84859 3.41142 3.62823 3.72099 3.76561 3.78209 3.84999 4.13632 4.31944 4.46227 4.51085 4.61910 4.67455 4.68666 4.75892 4.80408 4.87492 4.89285 4.89448 5.01587 5.13447 5.15522 5.18289 5.27452 5.30506 5.35206 5.35914 5.45070 5.72358 5.81351 6.11058 6.16941 6.19544 6.39935 6.74104 6.98719 7.05760 7.14578 7.64359 8.46001 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033786 B = 0.001913 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.540948 B =14631.194235 C =15159.223561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.025 4.025 3 C -0.128 4.128 4 C -0.143 4.143 5 S -0.288 6.288 6 C -0.083 4.083 7 C 0.160 3.840 8 N -0.723 5.723 9 C 0.692 3.308 10 O -0.626 6.626 11 N -0.655 5.655 12 C 0.040 3.960 13 C -0.110 4.110 14 C -0.167 4.167 15 C 0.062 3.938 16 C -0.496 4.496 17 H 0.080 0.920 18 C 0.020 3.980 19 N -0.849 5.849 20 Si 0.991 3.009 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.255 1.255 24 C -0.207 4.207 25 C -0.108 4.108 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.415 0.585 40 H 0.417 0.583 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.281 0.719 44 H 0.114 0.886 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 16.676 -21.142 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 C -0.187 4.187 4 C -0.202 4.202 5 S -0.061 6.061 6 C -0.231 4.231 7 C 0.035 3.965 8 N -0.382 5.382 9 C 0.392 3.608 10 O -0.506 6.506 11 N -0.303 5.303 12 C -0.054 4.054 13 C -0.130 4.130 14 C -0.188 4.188 15 C 0.060 3.940 16 C -0.527 4.527 17 H 0.098 0.902 18 C -0.191 4.191 19 N -0.477 5.477 20 Si 0.812 3.188 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.178 1.178 24 C -0.227 4.227 25 C -0.128 4.128 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.255 0.745 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.163 17.512 -19.333 26.592 hybrid contribution -0.650 -0.975 -0.475 1.265 sum -5.813 16.537 -19.808 26.451 Atomic orbital electron populations 1.22141 0.91763 1.02864 1.03469 1.22815 0.98963 0.98305 0.93334 1.21682 1.01548 0.92053 1.03400 1.22140 1.01822 1.00316 0.95941 1.87279 1.71399 1.11107 1.36290 1.23400 1.04629 0.94023 1.01051 1.20653 0.98174 0.80248 0.97425 1.44724 1.57012 1.10545 1.25921 1.16201 0.80624 0.81071 0.82926 1.90939 1.44517 1.81001 1.34110 1.41802 1.58077 1.09202 1.21267 1.17123 0.95429 0.95916 0.96956 1.20677 0.96576 0.97944 0.97853 1.21161 1.00061 0.99192 0.98355 1.18076 0.90983 0.93109 0.91831 1.19752 1.31121 0.99914 1.01935 0.90162 1.26871 0.92344 0.97323 1.02566 1.69933 1.26527 1.21969 1.29311 0.85067 0.79822 0.77922 0.75999 1.18708 1.19894 1.17810 1.20948 0.97365 1.02995 1.01349 1.20415 0.96986 0.96638 0.98789 0.92017 0.89951 0.92113 0.92219 0.89057 0.92248 0.92107 0.89961 0.91981 0.87560 0.87638 0.92738 0.92582 0.74725 0.74531 0.88732 0.87936 0.90862 0.86791 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.32 71.98 0.60 -0.69 16 2 C -0.02 -0.28 0.95 -10.79 -0.01 -0.29 16 3 C -0.13 -1.30 8.48 71.98 0.61 -0.69 16 4 C -0.14 -1.27 8.32 71.99 0.60 -0.67 16 5 S -0.29 -5.18 20.65 -56.49 -1.17 -6.35 16 6 C -0.08 -1.22 5.17 71.98 0.37 -0.85 16 7 C 0.16 3.73 5.68 86.38 0.49 4.22 16 8 N -0.72 -16.83 5.56 -478.54 -2.66 -19.49 16 9 C 0.69 24.64 8.39 179.06 1.50 26.15 16 10 O -0.63 -29.99 13.76 -3.98 -0.05 -30.04 16 11 N -0.65 -21.83 5.31 -316.78 -1.68 -23.51 16 12 C 0.04 1.76 6.31 38.57 0.24 2.01 16 13 C -0.11 -5.83 8.61 22.14 0.19 -5.64 16 14 C -0.17 -9.68 8.61 22.48 0.19 -9.49 16 15 C 0.06 3.50 5.55 -21.27 -0.12 3.38 16 16 C -0.50 -27.68 9.02 23.39 0.21 -27.47 16 17 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 18 C 0.02 1.07 5.42 85.24 0.46 1.53 16 19 N -0.85 -48.60 10.61 21.82 0.23 -48.37 16 20 Si 0.99 40.64 29.56 68.60 2.03 42.67 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 24 C -0.21 -9.95 9.74 22.48 0.22 -9.73 16 25 C -0.11 -4.50 9.90 22.14 0.22 -4.29 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 27 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.51 6.68 -2.39 -0.02 0.49 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.06 0.50 6.68 -2.39 -0.02 0.49 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 1.21 7.00 -2.39 -0.02 1.19 16 36 H 0.11 1.22 6.99 -2.39 -0.02 1.20 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.42 5.84 8.49 -92.71 -0.79 5.05 16 40 H 0.42 9.51 8.83 -92.70 -0.82 8.69 16 41 H 0.09 5.20 6.22 -2.91 -0.02 5.18 16 42 H 0.10 6.37 6.15 -2.91 -0.02 6.35 16 43 H 0.28 14.78 8.30 -92.71 -0.77 14.01 16 44 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 45 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -75.23 377.83 1.88 -73.35 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.60 Total: 34.25 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 5.78 Total: -22.51 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -4.11 Total: -91.37 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.05 Total: -30.04 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.17 Total: -6.35 kcal Total: -75.23 1.88 -73.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067255513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.754 kcal (2) G-P(sol) polarization free energy of solvation -75.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds