Wall clock time and date at job start Tue Mar 31 2020 13:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47204 * 2 1 4 4 H 1.09001 * 109.47196 * 305.00004 * 3 2 1 5 5 C 1.53000 * 109.46838 * 185.00335 * 3 2 1 6 6 N 1.46900 * 109.47411 * 65.00050 * 3 2 1 7 7 C 1.46899 * 110.99430 * 66.04616 * 6 3 2 8 8 C 1.46897 * 111.00236 * 189.99890 * 6 3 2 9 9 C 1.50692 * 109.47333 * 170.00259 * 8 6 3 10 10 O 1.21300 * 119.99794 * 359.97438 * 9 8 6 11 11 N 1.34778 * 120.00235 * 180.02562 * 9 8 6 12 12 C 1.39941 * 120.00087 * 174.26342 * 11 9 8 13 13 C 1.38681 * 120.11392 * 335.23703 * 12 11 9 14 14 C 1.38218 * 120.01988 * 180.25804 * 13 12 11 15 15 C 1.38395 * 120.24798 * 359.73894 * 14 13 12 16 16 C 1.38080 * 120.23091 * 359.97438 * 15 14 13 17 17 C 1.38997 * 119.97739 * 0.02562 * 16 15 14 18 18 S 1.76197 * 120.12568 * 179.97438 * 17 16 15 19 19 C 1.76198 * 99.99932 * 5.61221 * 18 17 16 20 20 H 1.08003 * 119.99869 * 354.96559 * 19 18 17 21 21 C 1.38692 * 120.00049 * 174.96540 * 19 18 17 22 22 N 1.31655 * 119.99793 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99774 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46989 * 90.00348 * 23 21 19 25 25 H 1.48498 * 109.46878 * 209.99960 * 23 21 19 26 26 H 1.48486 * 109.47389 * 330.00093 * 23 21 19 27 27 H 1.09002 * 109.47322 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47119 * 299.99957 * 1 2 3 29 29 H 1.09000 * 109.47559 * 59.99947 * 1 2 3 30 30 H 1.09000 * 109.46451 * 239.99838 * 2 1 3 31 31 H 1.08998 * 109.46823 * 120.00133 * 2 1 3 32 32 H 1.09001 * 109.46957 * 299.99816 * 5 3 2 33 33 H 1.08999 * 109.47421 * 59.99747 * 5 3 2 34 34 H 1.09002 * 109.46986 * 179.97438 * 5 3 2 35 35 H 1.09008 * 109.46989 * 183.95730 * 7 6 3 36 36 H 1.09001 * 109.47556 * 303.95249 * 7 6 3 37 37 H 1.08997 * 109.47611 * 63.95842 * 7 6 3 38 38 H 1.09002 * 109.46878 * 49.99711 * 8 6 3 39 39 H 1.08999 * 109.46895 * 290.00480 * 8 6 3 40 40 H 0.97001 * 119.99846 * 354.25633 * 11 9 8 41 41 H 1.08005 * 119.98830 * 359.97438 * 13 12 11 42 42 H 1.08003 * 119.87457 * 179.76668 * 14 13 12 43 43 H 1.08009 * 119.88410 * 180.02562 * 15 14 13 44 44 H 1.07996 * 120.01487 * 180.02562 * 16 15 14 45 45 H 0.96997 * 119.99452 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 1.6514 2.0993 1.2552 7 6 2.3342 1.4871 2.4028 8 6 1.9126 3.5436 1.1964 9 6 1.2833 4.2169 2.3887 10 8 0.6764 3.5582 3.2068 11 7 1.3938 5.5509 2.5455 12 6 0.7103 6.1923 3.5846 13 6 -0.4354 5.6227 4.1197 14 6 -1.1119 6.2606 5.1423 15 6 -0.6476 7.4654 5.6403 16 6 0.4954 8.0388 5.1193 17 6 1.1832 7.4056 4.0907 18 16 2.6417 8.1342 3.4224 19 6 2.8304 9.5012 4.5180 20 1 2.0767 9.7027 5.2648 21 6 3.9467 10.3184 4.4212 22 7 4.8652 10.0730 3.5104 23 14 4.1464 11.7681 5.5823 24 1 4.8790 11.3314 6.7980 25 1 4.9116 12.8444 4.9031 26 1 2.8075 12.2809 5.9687 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9994 0.9051 0.7160 33 1 3.8532 0.9568 -1.0572 34 1 3.9282 2.4718 -0.1263 35 1 1.9762 1.9449 3.3251 36 1 2.1241 0.4178 2.4227 37 1 3.4090 1.6446 2.3126 38 1 1.4858 3.9530 0.2807 39 1 2.9883 3.7190 1.2059 40 1 1.9472 6.0665 1.9381 41 1 -0.8017 4.6827 3.7339 42 1 -2.0060 5.8167 5.5547 43 1 -1.1806 7.9586 6.4398 44 1 0.8548 8.9790 5.5107 45 1 5.6457 10.6449 3.4426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072601545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:15 Heat of formation + Delta-G solvation = -3.492642 kcal Electronic energy + Delta-G solvation = -24725.938110 eV Core-core repulsion = 21255.737846 eV Total energy + Delta-G solvation = -3470.200264 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28985 -38.70126 -37.42615 -34.34804 -33.18993 -32.76411 -30.32045 -29.96614 -29.40566 -27.68749 -25.89900 -25.33318 -23.48768 -22.40050 -21.81219 -19.95963 -19.66455 -18.37296 -17.10059 -16.83331 -16.16599 -15.89619 -15.59029 -15.11510 -14.85787 -14.50307 -14.11667 -13.90038 -13.77337 -13.63280 -13.40559 -13.18187 -12.93624 -12.82933 -12.43064 -12.22052 -11.95706 -11.67561 -11.55368 -11.50820 -11.37459 -11.28375 -11.23749 -11.06835 -10.91576 -10.69879 -10.39200 -10.09278 -9.82473 -9.56207 -9.27476 -8.80085 -8.64989 -8.33614 -7.62640 -6.54273 -6.52180 -4.24847 1.87485 2.10451 2.92777 3.00373 3.09152 3.15329 3.18991 3.36522 3.95056 3.98492 4.47625 4.55345 4.74443 4.88048 4.89636 4.97231 5.08859 5.13215 5.19103 5.25559 5.36481 5.40367 5.49623 5.55813 5.66584 5.68283 5.69107 5.73546 5.88437 5.90930 5.92831 6.03586 6.15005 6.23534 6.25822 6.31896 6.59205 6.78801 6.90946 6.93311 6.99071 7.14198 7.23750 7.44757 7.70643 7.81670 8.12264 8.44614 8.94634 10.53187 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.003093 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.980108 B = 9050.713393 C =10393.344791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.082 0.918 5 C -0.191 4.191 6 N -0.512 5.512 7 C 0.011 3.989 8 C 0.034 3.966 9 C 0.512 3.488 10 O -0.510 6.510 11 N -0.658 5.658 12 C 0.129 3.871 13 C -0.112 4.112 14 C -0.146 4.146 15 C -0.119 4.119 16 C -0.128 4.128 17 C -0.107 4.107 18 S 0.027 5.973 19 C -0.543 4.543 20 H 0.095 0.905 21 C 0.077 3.923 22 N -0.866 5.866 23 Si 0.925 3.075 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.268 1.268 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.410 0.590 41 H 0.138 0.862 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 -14.432 -6.851 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.030 4.030 4 H 0.101 0.899 5 C -0.249 4.249 6 N -0.236 5.236 7 C -0.136 4.136 8 C -0.097 4.097 9 C 0.299 3.701 10 O -0.385 6.385 11 N -0.303 5.303 12 C 0.027 3.973 13 C -0.134 4.134 14 C -0.169 4.169 15 C -0.140 4.140 16 C -0.154 4.154 17 C -0.224 4.224 18 S 0.281 5.719 19 C -0.690 4.690 20 H 0.113 0.887 21 C -0.133 4.133 22 N -0.500 5.500 23 Si 0.750 3.250 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.192 1.192 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.247 0.753 41 H 0.155 0.845 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.155 0.845 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.716 -15.138 -7.374 17.486 hybrid contribution 0.709 1.738 1.306 2.287 sum -4.008 -13.400 -6.067 15.246 Atomic orbital electron populations 1.21677 0.95108 1.00761 1.02773 1.21567 0.96941 0.94909 1.01675 1.21835 0.93259 0.95839 0.92106 0.89937 1.22518 0.97626 1.02297 1.02491 1.61878 1.58064 1.00607 1.03026 1.22650 0.95739 1.00302 0.94944 1.21981 1.00055 0.90004 0.97640 1.20518 0.80868 0.81513 0.87226 1.90613 1.40994 1.63579 1.43333 1.43418 1.48309 1.07656 1.30899 1.17197 0.93864 0.93139 0.93141 1.21095 0.93550 1.00746 0.97965 1.20766 1.00669 0.96380 0.99100 1.20961 0.96912 0.96016 1.00094 1.21278 0.95687 1.01140 0.97333 1.22437 1.02708 0.97338 0.99958 1.83012 1.21304 1.28623 1.39009 1.23253 1.10773 1.13616 1.21387 0.88748 1.25088 0.94276 0.98102 0.95832 1.69997 1.09765 1.38190 1.32038 0.86048 0.78830 0.80170 0.79958 1.19903 1.20517 1.19204 0.93625 0.91122 0.93259 0.91948 0.91787 0.91996 0.92013 0.92393 0.89299 0.91322 0.95653 0.87715 0.91437 0.75315 0.84487 0.87033 0.87158 0.84466 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.80 37.16 0.36 -0.93 16 2 C -0.11 -0.93 5.33 -26.73 -0.14 -1.08 16 3 C 0.08 0.70 2.31 -67.72 -0.16 0.54 16 4 H 0.08 0.71 7.93 -51.93 -0.41 0.29 16 5 C -0.19 -1.56 8.44 37.16 0.31 -1.25 16 6 N -0.51 -5.80 3.90 -236.34 -0.92 -6.73 16 7 C 0.01 0.13 8.33 60.06 0.50 0.63 16 8 C 0.03 0.40 5.02 -4.98 -0.03 0.37 16 9 C 0.51 7.95 7.36 -10.99 -0.08 7.87 16 10 O -0.51 -9.22 11.48 5.54 0.06 -9.15 16 11 N -0.66 -11.11 5.16 -9.70 -0.05 -11.16 16 12 C 0.13 2.54 6.44 -83.44 -0.54 2.00 16 13 C -0.11 -2.10 8.71 -39.42 -0.34 -2.45 16 14 C -0.15 -2.55 10.04 -39.53 -0.40 -2.95 16 15 C -0.12 -2.16 10.03 -39.58 -0.40 -2.56 16 16 C -0.13 -2.70 9.26 -39.36 -0.36 -3.06 16 17 C -0.11 -2.34 6.12 -38.75 -0.24 -2.58 16 18 S 0.03 0.65 20.37 -107.50 -2.19 -1.54 16 19 C -0.54 -14.33 9.08 30.90 0.28 -14.05 16 20 H 0.09 2.40 4.81 -52.48 -0.25 2.15 16 21 C 0.08 2.02 5.49 -17.46 -0.10 1.93 16 22 N -0.87 -23.74 13.22 55.49 0.73 -23.00 16 23 Si 0.92 20.16 29.55 -169.99 -5.02 15.14 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.55 6.26 -51.93 -0.33 0.22 16 32 H 0.06 0.53 6.42 -51.93 -0.33 0.20 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.49 6.91 -51.93 -0.36 0.13 16 35 H 0.09 1.29 5.88 -51.92 -0.31 0.98 16 36 H 0.07 0.72 6.21 -51.93 -0.32 0.40 16 37 H 0.03 0.28 6.46 -51.93 -0.34 -0.06 16 38 H 0.10 1.02 7.93 -51.93 -0.41 0.60 16 39 H 0.07 0.73 7.06 -51.93 -0.37 0.36 16 40 H 0.41 6.44 7.66 -40.82 -0.31 6.13 16 41 H 0.14 2.55 5.79 -52.48 -0.30 2.25 16 42 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.14 2.98 4.93 -52.49 -0.26 2.72 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -29.49 365.77 -9.57 -39.06 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.37 Total: 9.41 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -1.32 Total: -17.54 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.24 Total: -40.89 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.06 Total: -9.15 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.19 Total: -1.54 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.49 -9.57 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072601545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.565 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds