Wall clock time and date at job start Tue Mar 31 2020 13:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47204 * 2 1 4 4 H 1.09001 * 109.47196 * 305.00004 * 3 2 1 5 5 C 1.53000 * 109.46838 * 185.00335 * 3 2 1 6 6 N 1.46900 * 109.47411 * 65.00050 * 3 2 1 7 7 C 1.46899 * 110.99430 * 66.04616 * 6 3 2 8 8 C 1.46897 * 111.00236 * 189.99890 * 6 3 2 9 9 C 1.50692 * 109.47333 * 170.00259 * 8 6 3 10 10 O 1.21300 * 119.99794 * 359.97438 * 9 8 6 11 11 N 1.34778 * 120.00235 * 180.02562 * 9 8 6 12 12 C 1.39941 * 120.00087 * 174.26342 * 11 9 8 13 13 C 1.38681 * 120.11392 * 335.23703 * 12 11 9 14 14 C 1.38218 * 120.01988 * 180.25804 * 13 12 11 15 15 C 1.38395 * 120.24798 * 359.73894 * 14 13 12 16 16 C 1.38080 * 120.23091 * 359.97438 * 15 14 13 17 17 C 1.38997 * 119.97739 * 0.02562 * 16 15 14 18 18 S 1.76197 * 120.12568 * 179.97438 * 17 16 15 19 19 C 1.76198 * 99.99932 * 5.61221 * 18 17 16 20 20 H 1.08003 * 119.99869 * 354.96559 * 19 18 17 21 21 C 1.38692 * 120.00049 * 174.96540 * 19 18 17 22 22 N 1.31655 * 119.99793 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99774 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46989 * 90.00348 * 23 21 19 25 25 H 1.48498 * 109.46878 * 209.99960 * 23 21 19 26 26 H 1.48486 * 109.47389 * 330.00093 * 23 21 19 27 27 H 1.09002 * 109.47322 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47119 * 299.99957 * 1 2 3 29 29 H 1.09000 * 109.47559 * 59.99947 * 1 2 3 30 30 H 1.09000 * 109.46451 * 239.99838 * 2 1 3 31 31 H 1.08998 * 109.46823 * 120.00133 * 2 1 3 32 32 H 1.09001 * 109.46957 * 299.99816 * 5 3 2 33 33 H 1.08999 * 109.47421 * 59.99747 * 5 3 2 34 34 H 1.09002 * 109.46986 * 179.97438 * 5 3 2 35 35 H 1.09008 * 109.46989 * 183.95730 * 7 6 3 36 36 H 1.09001 * 109.47556 * 303.95249 * 7 6 3 37 37 H 1.08997 * 109.47611 * 63.95842 * 7 6 3 38 38 H 1.09002 * 109.46878 * 49.99711 * 8 6 3 39 39 H 1.08999 * 109.46895 * 290.00480 * 8 6 3 40 40 H 0.97001 * 119.99846 * 354.25633 * 11 9 8 41 41 H 1.08005 * 119.98830 * 359.97438 * 13 12 11 42 42 H 1.08003 * 119.87457 * 179.76668 * 14 13 12 43 43 H 1.08009 * 119.88410 * 180.02562 * 15 14 13 44 44 H 1.07996 * 120.01487 * 180.02562 * 16 15 14 45 45 H 0.96997 * 119.99452 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 1.6514 2.0993 1.2552 7 6 2.3342 1.4871 2.4028 8 6 1.9126 3.5436 1.1964 9 6 1.2833 4.2169 2.3887 10 8 0.6764 3.5582 3.2068 11 7 1.3938 5.5509 2.5455 12 6 0.7103 6.1923 3.5846 13 6 -0.4354 5.6227 4.1197 14 6 -1.1119 6.2606 5.1423 15 6 -0.6476 7.4654 5.6403 16 6 0.4954 8.0388 5.1193 17 6 1.1832 7.4056 4.0907 18 16 2.6417 8.1342 3.4224 19 6 2.8304 9.5012 4.5180 20 1 2.0767 9.7027 5.2648 21 6 3.9467 10.3184 4.4212 22 7 4.8652 10.0730 3.5104 23 14 4.1464 11.7681 5.5823 24 1 4.8790 11.3314 6.7980 25 1 4.9116 12.8444 4.9031 26 1 2.8075 12.2809 5.9687 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9994 0.9051 0.7160 33 1 3.8532 0.9568 -1.0572 34 1 3.9282 2.4718 -0.1263 35 1 1.9762 1.9449 3.3251 36 1 2.1241 0.4178 2.4227 37 1 3.4090 1.6446 2.3126 38 1 1.4858 3.9530 0.2807 39 1 2.9883 3.7190 1.2059 40 1 1.9472 6.0665 1.9381 41 1 -0.8017 4.6827 3.7339 42 1 -2.0060 5.8167 5.5547 43 1 -1.1806 7.9586 6.4398 44 1 0.8548 8.9790 5.5107 45 1 5.6457 10.6449 3.4426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072601545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:14 Heat of formation + Delta-G solvation = -20.392905 kcal Electronic energy + Delta-G solvation = -24726.670960 eV Core-core repulsion = 21255.737846 eV Total energy + Delta-G solvation = -3470.933114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57129 -39.79839 -38.68954 -35.74600 -34.72426 -34.00716 -31.88005 -31.04645 -30.35884 -28.79857 -27.85628 -26.23854 -24.35623 -23.86357 -23.18358 -21.25667 -20.49382 -20.10133 -18.40097 -18.20661 -17.58556 -17.12633 -16.89259 -16.67350 -15.98927 -15.69678 -15.51583 -15.13019 -14.76924 -14.61011 -14.59132 -14.47204 -14.22498 -14.05870 -13.82194 -13.36729 -13.00910 -12.96965 -12.86363 -12.80648 -12.75287 -12.52516 -12.27232 -12.10018 -12.05368 -11.66314 -11.60709 -11.40282 -11.39262 -11.33573 -10.66238 -10.60629 -10.34322 -9.24417 -9.11307 -8.49629 -8.33493 -6.23377 0.38823 0.54251 1.26715 1.38284 1.45010 1.58524 1.65027 2.01505 2.17715 2.86174 2.99882 3.01089 3.16575 3.67162 3.86397 4.09180 4.15533 4.19367 4.27545 4.31746 4.37640 4.51163 4.52667 4.56729 4.62865 4.68332 4.70870 4.74333 4.83323 4.98591 5.00957 5.05363 5.18686 5.22163 5.29337 5.32901 5.41209 5.44897 5.49995 5.58461 5.66113 5.73249 5.96707 6.12688 6.16638 6.22804 6.49357 6.95912 7.15189 8.59132 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.003093 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.980108 B = 9050.713393 C =10393.344791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C 0.078 3.922 4 H 0.091 0.909 5 C -0.187 4.187 6 N -0.523 5.523 7 C 0.017 3.983 8 C 0.041 3.959 9 C 0.511 3.489 10 O -0.535 6.535 11 N -0.660 5.660 12 C 0.129 3.871 13 C -0.123 4.123 14 C -0.129 4.129 15 C -0.118 4.118 16 C -0.143 4.143 17 C -0.130 4.130 18 S -0.014 6.014 19 C -0.563 4.563 20 H 0.096 0.904 21 C 0.027 3.973 22 N -0.902 5.902 23 Si 0.991 3.009 24 H -0.269 1.269 25 H -0.273 1.273 26 H -0.260 1.260 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.414 0.586 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.906 -15.295 -6.966 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.029 4.029 4 H 0.109 0.891 5 C -0.245 4.245 6 N -0.247 5.247 7 C -0.130 4.130 8 C -0.090 4.090 9 C 0.300 3.700 10 O -0.412 6.412 11 N -0.305 5.305 12 C 0.027 3.973 13 C -0.144 4.144 14 C -0.152 4.152 15 C -0.139 4.139 16 C -0.168 4.168 17 C -0.246 4.246 18 S 0.236 5.764 19 C -0.710 4.710 20 H 0.114 0.886 21 C -0.180 4.180 22 N -0.537 5.537 23 Si 0.813 3.187 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.184 1.184 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.146 0.854 39 H 0.097 0.903 40 H 0.251 0.749 41 H 0.158 0.842 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.142 0.858 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.761 -16.042 -7.496 18.620 hybrid contribution 0.861 1.833 1.347 2.432 sum -4.900 -14.209 -6.149 16.240 Atomic orbital electron populations 1.21632 0.95632 1.01003 1.01733 1.21570 0.96382 0.94512 1.02364 1.21920 0.93934 0.96110 0.90971 0.89090 1.22478 0.96802 1.02188 1.03082 1.61865 1.58512 1.00374 1.03953 1.22522 0.95921 1.00644 0.93949 1.21997 1.00402 0.90165 0.96413 1.21256 0.80150 0.80759 0.87859 1.90596 1.42173 1.63887 1.44523 1.43539 1.48264 1.08314 1.30377 1.17414 0.94061 0.92485 0.93317 1.21300 0.93453 1.01021 0.98652 1.21229 1.00961 0.95489 0.97475 1.21271 0.95881 0.96182 1.00531 1.21367 0.96924 1.01008 0.97533 1.22397 1.02238 0.98617 1.01373 1.82855 1.23909 1.29314 1.40283 1.23607 1.11148 1.14412 1.21817 0.88611 1.26008 0.93856 1.00734 0.97361 1.70099 1.10393 1.39491 1.33689 0.85042 0.79010 0.76831 0.77815 1.19449 1.19795 1.18440 0.92803 0.93507 0.92851 0.90118 0.92186 0.92481 0.90514 0.92764 0.92351 0.90266 0.95085 0.85359 0.90301 0.74851 0.84155 0.83340 0.83819 0.85783 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.80 71.98 0.71 -1.60 16 2 C -0.11 -1.59 5.33 30.59 0.16 -1.43 16 3 C 0.08 1.24 2.31 44.91 0.10 1.35 16 4 H 0.09 1.32 7.93 -2.39 -0.02 1.30 16 5 C -0.19 -2.66 8.44 71.98 0.61 -2.05 16 6 N -0.52 -11.25 3.90 -901.64 -3.52 -14.77 16 7 C 0.02 0.40 8.33 127.69 1.06 1.46 16 8 C 0.04 0.91 5.02 85.56 0.43 1.34 16 9 C 0.51 15.76 7.36 87.65 0.64 16.40 16 10 O -0.54 -19.32 11.48 -3.09 -0.04 -19.36 16 11 N -0.66 -22.45 5.16 -302.99 -1.56 -24.02 16 12 C 0.13 5.13 6.44 38.31 0.25 5.37 16 13 C -0.12 -4.46 8.71 22.37 0.19 -4.27 16 14 C -0.13 -4.18 10.04 22.30 0.22 -3.95 16 15 C -0.12 -4.04 10.03 22.27 0.22 -3.82 16 16 C -0.14 -6.00 9.26 22.41 0.21 -5.79 16 17 C -0.13 -5.77 6.12 22.81 0.14 -5.63 16 18 S -0.01 -0.72 20.37 -56.49 -1.15 -1.88 16 19 C -0.56 -30.49 9.08 67.93 0.62 -29.87 16 20 H 0.10 5.00 4.81 -2.91 -0.01 4.98 16 21 C 0.03 1.42 5.49 84.83 0.47 1.88 16 22 N -0.90 -50.55 13.22 21.63 0.29 -50.27 16 23 Si 0.99 41.64 29.55 68.60 2.03 43.67 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.98 7.75 -2.38 -0.02 0.96 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.92 6.26 -2.39 -0.01 0.91 16 32 H 0.06 0.87 6.42 -2.39 -0.02 0.86 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.82 6.91 -2.39 -0.02 0.80 16 35 H 0.06 1.71 5.88 -2.38 -0.01 1.70 16 36 H 0.08 1.60 6.21 -2.39 -0.01 1.59 16 37 H 0.03 0.66 6.46 -2.39 -0.02 0.64 16 38 H 0.13 2.24 7.93 -2.39 -0.02 2.22 16 39 H 0.08 1.60 7.06 -2.39 -0.02 1.59 16 40 H 0.41 13.30 7.66 -92.71 -0.71 12.59 16 41 H 0.14 5.07 5.79 -2.91 -0.02 5.05 16 42 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 43 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 44 H 0.12 5.48 4.93 -2.91 -0.01 5.47 16 45 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -64.95 365.77 2.39 -62.56 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.31 Total: 34.68 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 6.04 Total: -30.61 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -4.80 Total: -89.06 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.04 Total: -19.36 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.15 Total: -1.88 kcal Total: -64.95 2.39 -62.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072601545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.167 kcal (2) G-P(sol) polarization free energy of solvation -64.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds