Wall clock time and date at job start Tue Mar 31 2020 13:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47391 * 2 1 4 4 N 1.46900 * 109.47202 * 120.00273 * 2 1 3 5 5 C 1.46905 * 110.99802 * 183.95215 * 4 2 1 6 6 C 1.46902 * 110.99972 * 59.99851 * 4 2 1 7 7 C 1.53004 * 109.46970 * 189.99738 * 6 4 2 8 8 N 1.46492 * 109.47018 * 180.02562 * 7 6 4 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47860 * 119.99972 * 179.97438 * 9 8 7 12 12 C 1.39661 * 120.10534 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.04191 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67598 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46964 * 60.00073 * 21 19 17 23 23 H 1.48496 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46962 * 299.99839 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09003 * 109.47208 * 299.99514 * 1 2 3 27 27 H 1.08994 * 109.47404 * 59.99892 * 1 2 3 28 28 H 1.09004 * 109.47216 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46952 * 239.99752 * 2 1 3 30 30 H 1.08996 * 109.47521 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47029 * 300.00314 * 3 2 1 32 32 H 1.09005 * 109.47275 * 59.99950 * 3 2 1 33 33 H 1.08997 * 109.47131 * 296.04292 * 5 4 2 34 34 H 1.08993 * 109.46837 * 56.05031 * 5 4 2 35 35 H 1.09001 * 109.46802 * 176.04597 * 5 4 2 36 36 H 1.09000 * 109.46927 * 70.00556 * 6 4 2 37 37 H 1.08994 * 109.47420 * 310.00067 * 6 4 2 38 38 H 1.09005 * 109.46655 * 60.00137 * 7 6 4 39 39 H 1.09002 * 109.47164 * 300.00069 * 7 6 4 40 40 H 0.96996 * 120.00373 * 359.97438 * 8 7 6 41 41 H 1.08002 * 119.98248 * 0.02562 * 12 11 9 42 42 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 43 43 H 1.08006 * 119.89818 * 180.31471 * 14 13 12 44 44 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4851 -0.6308 1.2815 6 6 1.5486 -2.0836 1.2333 7 6 1.8627 -2.6952 2.6001 8 7 1.3936 -4.0826 2.6337 9 6 1.5636 -4.8248 3.7459 10 8 2.1066 -4.3430 4.7208 11 6 1.0895 -6.2249 3.7799 12 6 0.4647 -6.7804 2.6611 13 6 0.0222 -8.0875 2.6945 14 6 0.2006 -8.8538 3.8305 15 6 0.8167 -8.3087 4.9531 16 16 1.0345 -9.2877 6.4018 17 6 -0.4027 -8.8189 7.3069 18 1 -1.1369 -8.1682 6.8553 19 6 -0.5912 -9.2857 8.5997 20 7 0.3032 -10.0792 9.1498 21 14 -2.1154 -8.7891 9.5589 22 1 -3.3277 -9.2449 8.8325 23 1 -2.0791 -9.4159 10.9047 24 1 -2.1503 -7.3115 9.7024 25 6 1.2647 -6.9944 4.9289 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9192 -1.1675 0.4379 34 1 3.8069 0.4102 1.2544 35 1 3.8164 -1.0894 2.2132 36 1 2.0519 -2.6566 0.4546 37 1 0.4722 -2.1070 1.0635 38 1 1.3595 -2.1221 3.3789 39 1 2.9392 -2.6719 2.7699 40 1 0.9599 -4.4669 1.8559 41 1 0.3278 -6.1869 1.7692 42 1 -0.4609 -8.5142 1.8281 43 1 -0.1433 -9.8775 3.8488 44 1 0.1715 -10.4053 10.0539 45 1 1.7469 -6.5700 5.7971 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079539528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:06 Heat of formation + Delta-G solvation = -11.258658 kcal Electronic energy + Delta-G solvation = -23695.883527 eV Core-core repulsion = 20225.346503 eV Total energy + Delta-G solvation = -3470.537024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.01210 -38.88474 -37.77133 -35.10240 -32.66353 -32.49652 -31.04543 -30.54234 -29.43254 -27.42984 -25.65038 -25.55608 -23.65615 -22.48585 -21.83989 -20.68180 -20.11464 -18.29642 -17.36139 -16.91390 -16.18229 -15.77471 -15.44127 -15.24957 -15.04795 -14.84602 -14.79739 -14.30567 -14.20888 -13.63007 -13.47575 -13.36223 -12.96839 -12.90587 -12.64545 -12.36554 -12.33199 -12.17276 -11.95006 -11.65519 -11.44846 -11.35690 -11.15392 -11.12410 -11.06070 -10.98997 -10.70305 -9.98332 -9.78433 -9.16480 -9.14008 -9.00866 -8.77231 -8.58163 -8.02718 -6.70409 -6.27349 -4.01425 1.16754 1.66711 2.90702 3.05452 3.22251 3.24846 3.27701 3.46219 3.67617 4.09823 4.27115 4.41003 4.49338 4.55633 4.73489 4.87940 4.88911 4.98271 5.07644 5.09416 5.13996 5.15511 5.23703 5.25454 5.37291 5.38319 5.42499 5.48458 5.60930 5.66600 5.68947 5.74860 5.81912 5.87313 5.87722 5.99675 6.25154 6.31661 6.58471 6.63108 6.63569 6.64882 6.93497 7.19168 7.47998 7.58444 8.29631 8.33570 9.18291 10.79286 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.002229 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.582657 B =12556.527087 C =12976.519564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.148 4.148 4 N -0.534 5.534 5 C 0.014 3.986 6 C 0.040 3.960 7 C 0.124 3.876 8 N -0.733 5.733 9 C 0.564 3.436 10 O -0.532 6.532 11 C -0.154 4.154 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.055 4.055 15 C -0.107 4.107 16 S -0.034 6.034 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.019 4.019 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.398 0.602 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.270 0.730 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 16.897 -21.693 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 C -0.206 4.206 4 N -0.259 5.259 5 C -0.134 4.134 6 C -0.089 4.089 7 C 0.000 4.000 8 N -0.387 5.387 9 C 0.353 3.647 10 O -0.409 6.409 11 C -0.159 4.159 12 C -0.109 4.109 13 C -0.161 4.161 14 C -0.076 4.076 15 C -0.218 4.218 16 S 0.200 5.800 17 C -0.668 4.668 18 H 0.093 0.907 19 C -0.136 4.136 20 N -0.505 5.505 21 Si 0.747 3.253 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.198 1.198 25 C -0.040 4.040 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.233 0.767 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.080 0.920 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.657 16.636 -20.068 26.202 hybrid contribution -1.757 0.584 -0.916 2.066 sum 0.900 17.220 -20.985 27.161 Atomic orbital electron populations 1.21931 0.94132 1.02157 1.02454 1.21629 0.95891 0.95091 0.90548 1.21924 1.01137 0.95093 1.02421 1.61923 1.10720 1.13818 1.39422 1.22569 0.86959 1.02500 1.01371 1.22341 1.01645 0.88581 0.96298 1.21243 1.00220 0.81337 0.97249 1.45795 1.62939 1.13252 1.16698 1.18383 0.78374 0.85748 0.82220 1.90782 1.42629 1.72972 1.34525 1.19853 1.05867 0.93584 0.96572 1.21122 0.97595 0.95659 0.96574 1.21054 1.02131 0.94262 0.98651 1.21960 0.93859 0.99904 0.91918 1.22862 0.99959 0.97437 1.01496 1.83596 1.35312 1.52538 1.08541 1.22795 1.06102 1.36265 1.01599 0.90662 1.25005 0.97588 0.94664 0.96329 1.69975 1.34164 1.31141 1.15250 0.86176 0.81565 0.79058 0.78520 1.19826 1.20733 1.19776 1.21962 0.93440 0.92376 0.96258 0.91493 0.92126 0.92430 0.94236 0.92376 0.92142 0.91542 0.95547 0.90676 0.90726 0.94217 0.89558 0.90493 0.91425 0.76746 0.86583 0.85871 0.85066 0.92002 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.99 37.16 0.33 -0.56 16 2 C 0.08 0.50 2.67 -67.72 -0.18 0.32 16 3 C -0.15 -0.84 8.84 37.15 0.33 -0.51 16 4 N -0.53 -4.20 4.63 -234.89 -1.09 -5.29 16 5 C 0.01 0.10 8.95 60.07 0.54 0.64 16 6 C 0.04 0.31 4.89 -3.82 -0.02 0.29 16 7 C 0.12 1.31 5.60 -4.04 -0.02 1.28 16 8 N -0.73 -8.50 5.51 -61.24 -0.34 -8.84 16 9 C 0.56 9.24 7.77 -12.32 -0.10 9.14 16 10 O -0.53 -10.79 16.34 5.32 0.09 -10.71 16 11 C -0.15 -2.61 5.87 -105.00 -0.62 -3.22 16 12 C -0.09 -1.23 9.54 -39.12 -0.37 -1.60 16 13 C -0.14 -2.01 10.02 -39.67 -0.40 -2.41 16 14 C -0.06 -0.99 9.79 -39.25 -0.38 -1.37 16 15 C -0.11 -2.30 5.45 -39.00 -0.21 -2.51 16 16 S -0.03 -0.89 21.40 -107.50 -2.30 -3.19 16 17 C -0.52 -14.77 9.46 30.92 0.29 -14.48 16 18 H 0.08 2.11 7.79 -52.49 -0.41 1.71 16 19 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 20 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16 21 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.02 -0.38 9.34 -38.92 -0.36 -0.75 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.34 6.20 -51.93 -0.32 0.02 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.31 6.26 -51.93 -0.33 -0.01 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.47 6.01 -51.93 -0.31 0.16 16 35 H 0.07 0.59 6.47 -51.93 -0.34 0.25 16 36 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 37 H 0.09 0.61 5.83 -51.93 -0.30 0.31 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.77 6.55 -51.93 -0.34 0.43 16 40 H 0.40 3.43 6.50 -40.82 -0.27 3.16 16 41 H 0.12 1.09 6.40 -52.49 -0.34 0.75 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.14 3.11 7.65 -52.49 -0.40 2.70 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -32.97 379.86 -10.19 -43.15 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.71 Total: 1.18 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.27 Total: -13.77 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.69 Total: -38.96 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.97 -10.19 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079539528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.894 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds