Wall clock time and date at job start Tue Mar 31 2020 13:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47035 * 2 1 4 4 N 1.46499 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.36884 * 120.00194 * 269.99945 * 4 3 2 6 6 H 1.07998 * 120.00216 * 136.73599 * 5 4 3 7 7 C 1.39004 * 119.99929 * 316.74124 * 5 4 3 8 8 N 1.31397 * 120.00276 * 162.79193 * 7 5 4 9 9 Si 1.86797 * 120.00230 * 342.78699 * 7 5 4 10 10 H 1.48506 * 109.47139 * 95.20010 * 9 7 5 11 11 H 1.48499 * 109.47535 * 215.20185 * 9 7 5 12 12 H 1.48507 * 109.47092 * 335.20536 * 9 7 5 13 13 C 1.34782 * 119.99880 * 89.99751 * 4 3 2 14 14 O 1.21730 * 120.00016 * 354.45057 * 13 4 3 15 15 C 1.46555 * 120.00031 * 174.44277 * 13 4 3 16 16 S 1.76217 * 126.17858 * 352.98602 * 15 13 4 17 17 C 1.70924 * 90.37202 * 179.97438 * 16 15 13 18 18 C 1.50709 * 124.69981 * 180.02562 * 17 16 15 19 19 C 1.54262 * 110.03189 * 238.19985 * 18 17 16 20 20 C 1.54972 * 104.16065 * 217.13919 * 19 18 17 21 21 C 1.54898 * 102.77495 * 37.88541 * 20 19 18 22 22 C 1.53876 * 110.03120 * 120.98055 * 18 17 16 23 23 N 1.29374 * 110.59854 * 0.32211 * 17 16 15 24 24 C 1.30944 * 117.46169 * 359.74394 * 23 17 16 25 25 C 1.50699 * 123.03470 * 180.02562 * 24 23 17 26 26 H 1.09001 * 109.47182 * 299.99632 * 1 2 3 27 27 H 1.09000 * 109.47204 * 60.00193 * 1 2 3 28 28 H 1.09006 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46920 * 239.99910 * 2 1 3 30 30 H 1.09000 * 109.47204 * 119.99807 * 2 1 3 31 31 H 1.09000 * 109.46968 * 299.99952 * 3 2 1 32 32 H 1.08998 * 109.47438 * 59.99725 * 3 2 1 33 33 H 0.97000 * 120.00267 * 185.01059 * 8 7 5 34 34 H 1.09003 * 110.01464 * 359.59031 * 18 17 16 35 35 H 1.09007 * 110.48694 * 335.78373 * 19 18 17 36 36 H 1.08993 * 110.48931 * 98.42594 * 19 18 17 37 37 H 1.08997 * 110.71683 * 279.57343 * 20 19 18 38 38 H 1.08992 * 110.76814 * 156.21928 * 20 19 18 39 39 H 1.08997 * 110.48301 * 203.41199 * 21 20 19 40 40 H 1.08994 * 110.59690 * 80.82282 * 21 20 19 41 41 H 1.08997 * 110.03358 * 238.56805 * 22 18 17 42 42 H 1.09004 * 110.02871 * 359.95040 * 22 18 17 43 43 H 1.09005 * 109.47379 * 269.97506 * 25 24 23 44 44 H 1.08996 * 109.47340 * 29.97173 * 25 24 23 45 45 H 1.09000 * 109.47326 * 149.97521 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1900 1.4423 1.1845 6 1 5.0499 0.8013 1.3112 7 6 3.7787 2.2672 2.2251 8 7 4.1983 2.0393 3.4492 9 14 2.6295 3.6996 1.8832 10 1 1.2276 3.2813 2.1381 11 1 2.9766 4.8362 2.7736 12 1 2.7707 4.1200 0.4659 13 6 4.1784 1.4426 -1.1682 14 8 3.5736 1.3408 -2.2197 15 6 5.6388 1.5656 -1.1718 16 16 6.6585 1.8939 0.2273 17 6 8.0517 1.8400 -0.7614 18 6 9.4615 2.0435 -0.2692 19 6 10.1167 3.2237 -1.0158 20 6 11.5894 2.7806 -1.2072 21 6 11.4556 1.2661 -1.5032 22 6 10.3125 0.7993 -0.5785 23 7 7.7277 1.6064 -1.9920 24 6 6.4559 1.4526 -2.2628 25 6 5.9392 1.1756 -3.6511 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.8551 2.5688 4.1860 34 1 9.4579 2.2361 0.8037 35 1 9.6363 3.3778 -1.9820 36 1 10.0657 4.1312 -0.4143 37 1 12.1636 2.9468 -0.2958 38 1 12.0428 3.3005 -2.0510 39 1 12.3815 0.7462 -1.2574 40 1 11.1925 1.1014 -2.5480 41 1 10.7227 0.3887 0.3441 42 1 9.7056 0.0480 -1.0838 43 1 5.7281 2.1188 -4.1552 44 1 6.6905 0.6226 -4.2148 45 1 5.0251 0.5852 -3.5875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079687013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:53 Heat of formation + Delta-G solvation = -13.363950 kcal Electronic energy + Delta-G solvation = -25680.058384 eV Core-core repulsion = 22209.430068 eV Total energy + Delta-G solvation = -3470.628316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.56165 -38.77187 -37.37535 -35.37089 -33.23721 -31.90213 -31.46359 -28.67078 -28.57279 -27.91437 -25.90118 -24.75757 -23.38020 -21.55187 -20.64943 -20.34172 -19.75605 -18.51013 -17.36678 -16.61628 -16.22030 -15.69337 -15.09770 -14.82614 -14.62676 -14.20983 -14.05223 -13.73034 -13.68408 -13.20221 -13.10372 -12.72945 -12.53642 -12.35341 -12.12387 -11.92629 -11.79015 -11.55173 -11.24690 -11.08047 -11.05728 -11.03524 -11.00826 -10.97373 -10.66422 -10.57597 -10.43484 -10.35094 -10.23581 -9.95765 -9.46554 -8.85488 -8.62663 -8.44808 -8.05743 -7.66779 -6.74572 -4.43588 1.15192 2.26009 2.70851 2.91196 3.05777 3.13590 3.27470 3.87367 4.08298 4.22774 4.51569 4.72916 4.76620 4.83683 5.03730 5.43243 5.50673 5.55786 5.56671 5.64643 5.71931 5.74968 5.76930 5.80970 5.82440 5.93394 5.97711 6.01493 6.06472 6.15138 6.23410 6.26653 6.29128 6.32926 6.37054 6.42477 6.44900 6.52283 6.55187 6.69643 6.81974 7.05552 7.15020 7.78565 7.94610 8.50831 8.65091 9.08378 9.45961 10.28561 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.004468 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.602547 B = 6264.733998 C = 7272.177969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.109 3.891 4 N -0.461 5.461 5 C -0.346 4.346 6 H 0.114 0.886 7 C 0.082 3.918 8 N -0.836 5.836 9 Si 0.878 3.122 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.257 1.257 13 C 0.553 3.447 14 O -0.582 6.582 15 C -0.272 4.272 16 S 0.279 5.721 17 C -0.038 4.038 18 C -0.010 4.010 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.109 4.109 23 N -0.485 5.485 24 C 0.105 3.895 25 C -0.072 4.072 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.282 0.718 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 0.321 -3.441 7.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.014 4.014 4 N -0.181 5.181 5 C -0.479 4.479 6 H 0.131 0.869 7 C -0.131 4.131 8 N -0.468 5.468 9 Si 0.705 3.295 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.181 1.181 13 C 0.343 3.657 14 O -0.468 6.468 15 C -0.397 4.397 16 S 0.546 5.454 17 C -0.310 4.310 18 C -0.032 4.032 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.148 4.148 23 N -0.201 5.201 24 C -0.035 4.035 25 C -0.131 4.131 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.710 0.536 -2.981 7.362 hybrid contribution -0.950 0.547 -0.602 1.251 sum 5.760 1.083 -3.583 6.869 Atomic orbital electron populations 1.21710 0.96263 1.01168 1.01376 1.21763 0.94830 0.97693 1.02695 1.21631 0.81708 0.96979 1.01098 1.43556 1.04367 1.64947 1.05222 1.19060 1.14625 1.24747 0.89478 0.86899 1.25484 0.96396 0.96524 0.94730 1.69651 1.40075 1.38180 0.98871 0.86832 0.80508 0.82128 0.80072 1.19416 1.20794 1.18107 1.17076 0.84592 0.80141 0.83857 1.90638 1.68828 1.55976 1.31354 1.25688 0.99242 1.17690 0.97053 1.85498 0.92446 1.60043 1.07455 1.28145 1.03742 1.03340 0.95726 1.20329 0.87463 0.96187 0.99196 1.22439 0.95024 0.96582 1.01050 1.22489 0.96432 0.96046 1.01029 1.22308 0.97692 0.95603 1.00096 1.22133 0.96265 0.96988 0.99431 1.65861 1.17807 1.16749 1.19662 1.20632 0.86698 0.99617 0.96550 1.20361 1.01120 1.02070 0.89530 0.93026 0.92968 0.92951 0.91817 0.91218 0.91196 0.91750 0.90693 0.89666 0.90566 0.91749 0.91675 0.91779 0.92105 0.91448 0.91754 0.91198 0.91524 0.92218 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.13 -2.45 6.26 -26.73 -0.17 -2.62 16 3 C 0.11 2.31 4.12 -4.04 -0.02 2.29 16 4 N -0.46 -10.84 2.08 -116.34 -0.24 -11.08 16 5 C -0.35 -8.39 7.23 -15.01 -0.11 -8.50 16 6 H 0.11 2.88 5.96 -39.21 -0.23 2.65 16 7 C 0.08 1.97 5.35 -17.45 -0.09 1.88 16 8 N -0.84 -20.80 13.95 55.50 0.77 -20.02 16 9 Si 0.88 19.24 24.97 -169.99 -4.24 15.00 16 10 H -0.27 -5.58 6.76 56.52 0.38 -5.20 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.55 13.23 7.56 -12.90 -0.10 13.13 16 14 O -0.58 -14.33 14.07 5.16 0.07 -14.26 16 15 C -0.27 -6.07 6.31 -36.76 -0.23 -6.30 16 16 S 0.28 5.65 18.73 -107.50 -2.01 3.64 16 17 C -0.04 -0.68 5.65 -13.31 -0.08 -0.76 16 18 C -0.01 -0.15 3.39 -90.65 -0.31 -0.45 16 19 C -0.11 -1.46 6.36 -25.03 -0.16 -1.62 16 20 C -0.12 -1.31 6.91 -24.69 -0.17 -1.48 16 21 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 22 C -0.11 -1.43 6.44 -25.61 -0.17 -1.59 16 23 N -0.49 -9.48 10.14 -7.46 -0.08 -9.55 16 24 C 0.11 2.19 6.83 -83.50 -0.57 1.61 16 25 C -0.07 -1.32 9.64 36.01 0.35 -0.97 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.47 7.50 -51.93 -0.39 1.08 16 32 H 0.06 1.37 3.65 -51.93 -0.19 1.18 16 33 H 0.28 6.54 8.32 -40.82 -0.34 6.20 16 34 H 0.09 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.08 1.14 7.62 -51.93 -0.40 0.74 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.05 7.63 -51.93 -0.40 0.65 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.77 6.23 -51.93 -0.32 1.45 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -26.78 364.58 -8.85 -35.64 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.00 Total: 3.91 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.62 Total: -8.76 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.46 Total: -40.66 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.07 Total: -14.26 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.24 Total: 15.00 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -2.01 Total: 3.64 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.78 -8.85 -35.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079687013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.274 kcal (2) G-P(sol) polarization free energy of solvation -26.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds