Wall clock time and date at job start Tue Mar 31 2020 13:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46807 * 2 1 4 4 N 1.46506 * 109.46764 * 179.97438 * 3 2 1 5 5 C 1.36773 * 119.99731 * 270.00047 * 4 3 2 6 6 H 1.07999 * 119.99692 * 144.70045 * 5 4 3 7 7 C 1.39061 * 119.99966 * 324.69341 * 5 4 3 8 8 N 1.31366 * 119.99680 * 156.73633 * 7 5 4 9 9 Si 1.86799 * 119.99952 * 336.73694 * 7 5 4 10 10 H 1.48502 * 109.47249 * 95.39147 * 9 7 5 11 11 H 1.48507 * 109.46878 * 215.38800 * 9 7 5 12 12 H 1.48493 * 109.47351 * 335.38679 * 9 7 5 13 13 C 1.34774 * 120.00006 * 90.00244 * 4 3 2 14 14 O 1.21838 * 119.99986 * 355.12426 * 13 4 3 15 15 C 1.41346 * 119.99728 * 175.12580 * 13 4 3 16 16 C 1.35714 * 119.99930 * 184.89065 * 15 13 4 17 17 C 1.41641 * 120.00586 * 185.25898 * 16 15 13 18 18 C 1.37151 * 126.19004 * 354.97591 * 17 16 15 19 19 N 1.30949 * 113.82834 * 179.69735 * 18 17 16 20 20 C 1.29360 * 117.50460 * 0.51855 * 19 18 17 21 21 C 1.50700 * 124.67043 * 179.76086 * 20 19 18 22 22 C 1.53006 * 109.46650 * 59.70108 * 21 20 19 23 23 C 1.52991 * 109.47138 * 299.70263 * 21 20 19 24 24 C 1.53000 * 109.47040 * 179.69647 * 21 20 19 25 25 S 1.70917 * 110.65820 * 359.49861 * 20 19 18 26 26 H 1.09002 * 109.46820 * 60.00003 * 1 2 3 27 27 H 1.08996 * 109.46829 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46928 * 299.99976 * 1 2 3 29 29 H 1.08995 * 109.47066 * 240.00403 * 2 1 3 30 30 H 1.08994 * 109.47133 * 120.00117 * 2 1 3 31 31 H 1.08995 * 109.46979 * 60.00349 * 3 2 1 32 32 H 1.08994 * 109.47370 * 299.99973 * 3 2 1 33 33 H 0.97005 * 119.99867 * 179.97438 * 8 7 5 34 34 H 1.07998 * 120.00173 * 4.88505 * 15 13 4 35 35 H 1.08004 * 120.00089 * 5.25693 * 16 15 13 36 36 H 1.07997 * 123.08177 * 359.97438 * 18 17 16 37 37 H 1.08994 * 109.47347 * 299.99925 * 22 21 20 38 38 H 1.09003 * 109.46513 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.46673 * 60.00254 * 22 21 20 40 40 H 1.09003 * 109.46963 * 180.02562 * 23 21 20 41 41 H 1.08998 * 109.47073 * 299.99729 * 23 21 20 42 42 H 1.09000 * 109.47831 * 60.00098 * 23 21 20 43 43 H 1.09000 * 109.47451 * 300.00852 * 24 21 20 44 44 H 1.09011 * 109.46662 * 60.00274 * 24 21 20 45 45 H 1.08997 * 109.46955 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 6 4.1884 1.4427 1.1854 6 1 5.1194 0.9022 1.2719 7 6 3.6844 2.1389 2.2786 8 7 4.0430 1.7991 3.4958 9 14 2.4974 3.5573 2.0163 10 1 1.1022 3.0656 2.1459 11 1 2.7487 4.6079 3.0353 12 1 2.6978 4.1259 0.6592 13 6 4.1794 1.4424 -1.1663 14 8 3.5740 1.3526 -2.2198 15 6 5.5890 1.5464 -1.1678 16 6 6.2608 1.6463 -2.3428 17 6 7.6771 1.6383 -2.3519 18 6 8.4940 1.6330 -1.2503 19 7 9.7713 1.6196 -1.5388 20 6 10.1012 1.6236 -2.7896 21 6 11.5183 1.6152 -3.3024 22 6 12.2356 0.3613 -2.7982 23 6 12.2508 2.8597 -2.7973 24 6 11.5070 1.6157 -4.8324 25 16 8.7087 1.6325 -3.7806 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.6918 2.2849 4.2584 34 1 6.1316 1.5465 -0.2340 35 1 5.7154 1.7319 -3.2711 36 1 8.1183 1.6348 -0.2378 37 1 12.2436 0.3608 -1.7082 38 1 13.2604 0.3550 -3.1695 39 1 11.7136 -0.5253 -3.1581 40 1 13.2757 2.8538 -3.1686 41 1 11.7398 3.7529 -3.1565 42 1 12.2590 2.8593 -1.7073 43 1 10.9850 0.7290 -5.1922 44 1 10.9958 2.5090 -5.1916 45 1 12.5319 1.6091 -5.2033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079687041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:04 Heat of formation + Delta-G solvation = 15.662918 kcal Electronic energy + Delta-G solvation = -24463.913067 eV Core-core repulsion = 20994.543450 eV Total energy + Delta-G solvation = -3469.369617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.80196 -39.11074 -36.94169 -35.57500 -33.64322 -32.98583 -31.79339 -28.61642 -27.65236 -27.43757 -26.45939 -25.56658 -24.75548 -22.45756 -21.30982 -20.66402 -19.14832 -18.11635 -17.94013 -16.62204 -16.36385 -15.67748 -15.06835 -14.93482 -14.47503 -14.36233 -14.21368 -14.01122 -13.88838 -13.71169 -13.24635 -13.03143 -12.61506 -12.55326 -12.45440 -12.40057 -11.90318 -11.88604 -11.67020 -11.64498 -11.56365 -11.26914 -11.17365 -11.02294 -10.90279 -10.83794 -10.54469 -10.25544 -10.15032 -9.83252 -9.44179 -9.28138 -8.97618 -8.72197 -8.01361 -7.68433 -6.68076 -4.15498 0.33200 1.43352 1.87450 2.16629 2.96073 3.12136 3.17826 3.20895 3.97688 4.01751 4.21506 4.40998 4.58790 4.69547 4.86179 4.89732 5.23799 5.33412 5.34578 5.40495 5.52404 5.53960 5.56891 5.60907 5.63426 5.69861 5.75228 5.84017 5.86722 5.88114 5.98862 6.09558 6.10639 6.21329 6.33549 6.37301 6.40192 6.45056 6.70498 6.75661 6.86928 6.94978 7.21540 7.89154 7.91215 8.09228 8.78512 9.20644 9.58281 10.41150 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019518 B = 0.002924 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.254863 B = 9573.962498 C =10360.451724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.099 3.901 4 N -0.441 5.441 5 C -0.342 4.342 6 H 0.109 0.891 7 C 0.069 3.931 8 N -0.842 5.842 9 Si 0.877 3.123 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.260 1.260 13 C 0.487 3.513 14 O -0.608 6.608 15 C -0.118 4.118 16 C -0.065 4.065 17 C -0.177 4.177 18 C 0.040 3.960 19 N -0.461 5.461 20 C 0.031 3.969 21 C 0.013 3.987 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.154 4.154 25 S 0.131 5.869 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.279 0.721 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.182 0.818 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.026 -0.021 -11.048 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.024 4.024 4 N -0.158 5.158 5 C -0.469 4.469 6 H 0.127 0.873 7 C -0.141 4.141 8 N -0.476 5.476 9 Si 0.704 3.296 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.184 1.184 13 C 0.281 3.719 14 O -0.497 6.497 15 C -0.143 4.143 16 C -0.088 4.088 17 C -0.298 4.298 18 C -0.114 4.114 19 N -0.173 5.173 20 C -0.244 4.244 21 C 0.009 3.991 22 C -0.192 4.192 23 C -0.192 4.192 24 C -0.212 4.212 25 S 0.391 5.609 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.199 0.801 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.000 -0.047 -12.019 16.293 hybrid contribution -1.061 0.759 1.279 1.827 sum 9.938 0.713 -10.740 14.650 Atomic orbital electron populations 1.21712 0.96292 1.01158 1.01367 1.21742 0.94832 0.97610 1.02706 1.21721 0.82351 0.97110 1.01174 1.43804 1.04420 1.61688 1.05911 1.19162 1.09268 1.32324 0.86185 0.87329 1.25383 0.97059 0.97021 0.94630 1.69756 1.42222 1.37411 0.98186 0.86932 0.80638 0.82653 0.79340 1.19798 1.21224 1.18411 1.16892 0.88229 0.83145 0.83628 1.90696 1.70807 1.57108 1.31109 1.22346 0.95358 0.98359 0.98273 1.20204 0.88773 1.00365 0.99494 1.23894 0.99126 1.11439 0.95373 1.22610 0.86068 1.02593 1.00151 1.65796 1.18755 1.14926 1.17840 1.27015 0.99824 1.06001 0.91609 1.19162 0.87045 0.97796 0.95054 1.21835 0.99448 0.95603 1.02342 1.21831 0.99358 0.95698 1.02328 1.22022 1.03054 1.02713 0.93381 1.83713 0.98366 1.67913 1.10877 0.92983 0.92926 0.93029 0.91799 0.91177 0.91743 0.91123 0.91076 0.84790 0.85124 0.80070 0.91399 0.91888 0.92554 0.91881 0.92565 0.91410 0.91837 0.91847 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.16 0.37 -1.96 16 2 C -0.13 -2.54 6.26 -26.73 -0.17 -2.71 16 3 C 0.10 2.19 4.19 -4.04 -0.02 2.17 16 4 N -0.44 -10.53 2.21 -118.14 -0.26 -10.79 16 5 C -0.34 -8.58 8.86 -15.04 -0.13 -8.71 16 6 H 0.11 2.81 6.92 -52.49 -0.36 2.44 16 7 C 0.07 1.74 5.30 -17.45 -0.09 1.65 16 8 N -0.84 -22.16 13.95 55.50 0.77 -21.38 16 9 Si 0.88 19.83 25.01 -169.99 -4.25 15.58 16 10 H -0.27 -5.86 6.66 56.52 0.38 -5.49 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 13 C 0.49 11.44 7.38 -15.08 -0.11 11.33 16 14 O -0.61 -15.29 15.76 5.06 0.08 -15.21 16 15 C -0.12 -2.42 8.59 -39.30 -0.34 -2.75 16 16 C -0.06 -1.17 9.47 -39.19 -0.37 -1.54 16 17 C -0.18 -2.87 6.31 -38.68 -0.24 -3.12 16 18 C 0.04 0.65 10.84 -18.32 -0.20 0.45 16 19 N -0.46 -7.12 10.47 -11.16 -0.12 -7.24 16 20 C 0.03 0.40 5.77 -13.32 -0.08 0.33 16 21 C 0.01 0.13 0.99 -155.66 -0.15 -0.02 16 22 C -0.13 -1.23 8.45 37.16 0.31 -0.92 16 23 C -0.13 -1.23 8.45 37.15 0.31 -0.91 16 24 C -0.15 -1.21 7.53 37.16 0.28 -0.93 16 25 S 0.13 1.72 21.50 -107.50 -2.31 -0.59 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.06 1.43 3.03 -51.93 -0.16 1.28 16 32 H 0.07 1.54 7.49 -51.93 -0.39 1.15 16 33 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.13 2.65 4.99 -52.49 -0.26 2.39 16 35 H 0.13 2.40 7.49 -52.48 -0.39 2.01 16 36 H 0.18 2.86 6.90 -52.49 -0.36 2.50 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.50 7.91 -51.93 -0.41 0.09 16 44 H 0.06 0.50 7.91 -51.92 -0.41 0.08 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -28.51 376.74 -8.02 -36.53 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.98 Total: 5.07 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.63 Total: -7.66 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.40 Total: -39.41 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.08 Total: -15.21 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.25 Total: 15.58 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.31 Total: -0.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.51 -8.02 -36.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079687041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.196 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds