Wall clock time and date at job start Tue Mar 31 2020 13:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46807 * 2 1 4 4 N 1.46506 * 109.46764 * 179.97438 * 3 2 1 5 5 C 1.36773 * 119.99731 * 270.00047 * 4 3 2 6 6 H 1.07999 * 119.99692 * 144.70045 * 5 4 3 7 7 C 1.39061 * 119.99966 * 324.69341 * 5 4 3 8 8 N 1.31366 * 119.99680 * 156.73633 * 7 5 4 9 9 Si 1.86799 * 119.99952 * 336.73694 * 7 5 4 10 10 H 1.48502 * 109.47249 * 95.39147 * 9 7 5 11 11 H 1.48507 * 109.46878 * 215.38800 * 9 7 5 12 12 H 1.48493 * 109.47351 * 335.38679 * 9 7 5 13 13 C 1.34774 * 120.00006 * 90.00244 * 4 3 2 14 14 O 1.21838 * 119.99986 * 355.12426 * 13 4 3 15 15 C 1.41346 * 119.99728 * 175.12580 * 13 4 3 16 16 C 1.35714 * 119.99930 * 184.89065 * 15 13 4 17 17 C 1.41641 * 120.00586 * 185.25898 * 16 15 13 18 18 C 1.37151 * 126.19004 * 354.97591 * 17 16 15 19 19 N 1.30949 * 113.82834 * 179.69735 * 18 17 16 20 20 C 1.29360 * 117.50460 * 0.51855 * 19 18 17 21 21 C 1.50700 * 124.67043 * 179.76086 * 20 19 18 22 22 C 1.53006 * 109.46650 * 59.70108 * 21 20 19 23 23 C 1.52991 * 109.47138 * 299.70263 * 21 20 19 24 24 C 1.53000 * 109.47040 * 179.69647 * 21 20 19 25 25 S 1.70917 * 110.65820 * 359.49861 * 20 19 18 26 26 H 1.09002 * 109.46820 * 60.00003 * 1 2 3 27 27 H 1.08996 * 109.46829 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46928 * 299.99976 * 1 2 3 29 29 H 1.08995 * 109.47066 * 240.00403 * 2 1 3 30 30 H 1.08994 * 109.47133 * 120.00117 * 2 1 3 31 31 H 1.08995 * 109.46979 * 60.00349 * 3 2 1 32 32 H 1.08994 * 109.47370 * 299.99973 * 3 2 1 33 33 H 0.97005 * 119.99867 * 179.97438 * 8 7 5 34 34 H 1.07998 * 120.00173 * 4.88505 * 15 13 4 35 35 H 1.08004 * 120.00089 * 5.25693 * 16 15 13 36 36 H 1.07997 * 123.08177 * 359.97438 * 18 17 16 37 37 H 1.08994 * 109.47347 * 299.99925 * 22 21 20 38 38 H 1.09003 * 109.46513 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.46673 * 60.00254 * 22 21 20 40 40 H 1.09003 * 109.46963 * 180.02562 * 23 21 20 41 41 H 1.08998 * 109.47073 * 299.99729 * 23 21 20 42 42 H 1.09000 * 109.47831 * 60.00098 * 23 21 20 43 43 H 1.09000 * 109.47451 * 300.00852 * 24 21 20 44 44 H 1.09011 * 109.46662 * 60.00274 * 24 21 20 45 45 H 1.08997 * 109.46955 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 6 4.1884 1.4427 1.1854 6 1 5.1194 0.9022 1.2719 7 6 3.6844 2.1389 2.2786 8 7 4.0430 1.7991 3.4958 9 14 2.4974 3.5573 2.0163 10 1 1.1022 3.0656 2.1459 11 1 2.7487 4.6079 3.0353 12 1 2.6978 4.1259 0.6592 13 6 4.1794 1.4424 -1.1663 14 8 3.5740 1.3526 -2.2198 15 6 5.5890 1.5464 -1.1678 16 6 6.2608 1.6463 -2.3428 17 6 7.6771 1.6383 -2.3519 18 6 8.4940 1.6330 -1.2503 19 7 9.7713 1.6196 -1.5388 20 6 10.1012 1.6236 -2.7896 21 6 11.5183 1.6152 -3.3024 22 6 12.2356 0.3613 -2.7982 23 6 12.2508 2.8597 -2.7973 24 6 11.5070 1.6157 -4.8324 25 16 8.7087 1.6325 -3.7806 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.6918 2.2849 4.2584 34 1 6.1316 1.5465 -0.2340 35 1 5.7154 1.7319 -3.2711 36 1 8.1183 1.6348 -0.2378 37 1 12.2436 0.3608 -1.7082 38 1 13.2604 0.3550 -3.1695 39 1 11.7136 -0.5253 -3.1581 40 1 13.2757 2.8538 -3.1686 41 1 11.7398 3.7529 -3.1565 42 1 12.2590 2.8593 -1.7073 43 1 10.9850 0.7290 -5.1922 44 1 10.9958 2.5090 -5.1916 45 1 12.5319 1.6091 -5.2033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079687041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:03 Heat of formation + Delta-G solvation = 0.698450 kcal Electronic energy + Delta-G solvation = -24464.561975 eV Core-core repulsion = 20994.543450 eV Total energy + Delta-G solvation = -3470.018525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14466 -40.75905 -37.91059 -37.29340 -35.19506 -34.60818 -33.58440 -30.01504 -28.32336 -28.16722 -27.87376 -27.21591 -26.32562 -23.83790 -22.75002 -21.95223 -20.74821 -19.50515 -19.30881 -18.29639 -17.84478 -17.35388 -16.37489 -16.04404 -16.00378 -15.90002 -15.67095 -15.41663 -14.99639 -14.81161 -14.65693 -14.38744 -14.30412 -14.08366 -13.50674 -13.37047 -13.21491 -13.12205 -13.01542 -12.60779 -12.60149 -12.54369 -12.49133 -12.24591 -12.15788 -12.04897 -11.92776 -11.86459 -11.58049 -11.55222 -11.08721 -10.60922 -10.59543 -10.11895 -9.85527 -9.13777 -8.60232 -6.12922 -0.98577 0.25414 0.67092 0.73144 1.16764 1.30059 1.39160 1.83890 2.11969 2.43090 2.68587 2.99813 3.02592 3.75060 3.91500 3.93846 3.96263 3.99552 4.08940 4.12621 4.34365 4.35628 4.41770 4.51575 4.56702 4.71771 4.75621 4.76188 4.85920 4.91526 4.97022 4.97763 4.99197 5.08731 5.10513 5.17654 5.22898 5.23903 5.27426 5.37549 5.37915 5.41948 5.49510 5.96634 6.19582 6.69905 6.87485 7.33570 7.72476 8.53157 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019518 B = 0.002924 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.254863 B = 9573.962498 C =10360.451724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.093 3.907 4 N -0.457 5.457 5 C -0.346 4.346 6 H 0.087 0.913 7 C 0.036 3.964 8 N -0.882 5.882 9 Si 0.922 3.078 10 H -0.253 1.253 11 H -0.281 1.281 12 H -0.271 1.271 13 C 0.491 3.509 14 O -0.629 6.629 15 C -0.168 4.168 16 C -0.014 4.014 17 C -0.229 4.229 18 C 0.055 3.945 19 N -0.490 5.490 20 C 0.046 3.954 21 C 0.007 3.993 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.154 4.154 25 S 0.196 5.804 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.283 0.717 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.176 0.824 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.502 0.305 -13.501 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.029 4.029 4 N -0.175 5.175 5 C -0.473 4.473 6 H 0.105 0.895 7 C -0.170 4.170 8 N -0.517 5.517 9 Si 0.748 3.252 10 H -0.178 1.178 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.286 3.714 14 O -0.519 6.519 15 C -0.192 4.192 16 C -0.037 4.037 17 C -0.350 4.350 18 C -0.100 4.100 19 N -0.203 5.203 20 C -0.229 4.229 21 C 0.003 3.997 22 C -0.191 4.191 23 C -0.190 4.190 24 C -0.212 4.212 25 S 0.457 5.543 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.193 0.807 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.460 0.276 -14.484 19.108 hybrid contribution -1.122 0.626 1.755 2.175 sum 11.338 0.902 -12.729 17.070 Atomic orbital electron populations 1.21683 0.93100 1.02952 1.02132 1.21679 0.97591 0.95662 1.01373 1.21855 0.81521 0.98664 1.00862 1.43841 1.05163 1.62957 1.05513 1.18967 1.09024 1.32473 0.86838 0.89493 1.25830 0.98520 0.98376 0.94262 1.69806 1.44301 1.38782 0.98820 0.86213 0.80143 0.80365 0.78480 1.17838 1.20717 1.19582 1.17308 0.89287 0.81609 0.83185 1.90652 1.71623 1.57997 1.31666 1.22091 0.94062 1.03845 0.99207 1.20246 0.89766 0.95249 0.98431 1.23874 0.98639 1.14947 0.97572 1.22710 0.86680 1.00384 1.00251 1.65909 1.18167 1.17023 1.19184 1.27967 1.01818 1.01818 0.91259 1.19494 0.84857 0.98650 0.96724 1.21839 1.01029 0.94927 1.01256 1.21835 1.00923 0.95021 1.01247 1.22069 1.05010 1.02878 0.91225 1.83478 0.96476 1.66119 1.08210 0.91919 0.90673 0.92526 0.92886 0.92671 0.91960 0.91234 0.90682 0.85083 0.85101 0.80720 0.93184 0.89016 0.92801 0.89017 0.92748 0.93187 0.91681 0.91636 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.91 71.98 0.71 -3.54 16 2 C -0.12 -4.90 6.26 30.60 0.19 -4.71 16 3 C 0.09 4.18 4.19 86.38 0.36 4.54 16 4 N -0.46 -22.61 2.21 -645.84 -1.42 -24.04 16 5 C -0.35 -18.16 8.86 84.12 0.75 -17.42 16 6 H 0.09 4.82 6.92 -2.91 -0.02 4.80 16 7 C 0.04 1.90 5.30 84.96 0.45 2.35 16 8 N -0.88 -47.93 13.95 21.68 0.30 -47.63 16 9 Si 0.92 41.36 25.01 68.60 1.72 43.07 16 10 H -0.25 -10.48 6.66 99.48 0.66 -9.82 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 C 0.49 23.89 7.38 85.01 0.63 24.51 16 14 O -0.63 -32.21 15.76 -4.79 -0.08 -32.29 16 15 C -0.17 -7.13 8.59 22.45 0.19 -6.94 16 16 C -0.01 -0.50 9.47 22.52 0.21 -0.28 16 17 C -0.23 -7.31 6.31 22.85 0.14 -7.17 16 18 C 0.06 1.81 10.84 84.57 0.92 2.72 16 19 N -0.49 -14.76 10.47 -189.23 -1.98 -16.74 16 20 C 0.05 1.11 5.77 88.47 0.51 1.62 16 21 C 0.01 0.11 0.99 -52.93 -0.05 0.06 16 22 C -0.13 -2.06 8.45 71.98 0.61 -1.45 16 23 C -0.13 -2.03 8.45 71.98 0.61 -1.43 16 24 C -0.15 -1.78 7.53 71.98 0.54 -1.23 16 25 S 0.20 4.67 21.50 -56.49 -1.21 3.46 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 2.78 3.03 -2.39 -0.01 2.77 16 32 H 0.07 3.07 7.49 -2.39 -0.02 3.05 16 33 H 0.28 14.26 8.31 -92.70 -0.77 13.49 16 34 H 0.13 5.58 4.99 -2.91 -0.01 5.56 16 35 H 0.13 4.75 7.49 -2.91 -0.02 4.73 16 36 H 0.18 5.81 6.90 -2.91 -0.02 5.79 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 0.76 7.91 -2.39 -0.02 0.74 16 44 H 0.06 0.75 7.91 -2.38 -0.02 0.73 16 45 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -63.32 376.74 5.03 -58.29 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.93 Total: 24.22 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 6.77 Total: -8.35 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -3.10 Total: -88.40 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.08 Total: -32.29 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.72 Total: 43.07 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.21 Total: 3.46 kcal Total: -63.32 5.03 -58.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079687041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.992 kcal (2) G-P(sol) polarization free energy of solvation -63.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds