Wall clock time and date at job start Tue Mar 31 2020 13:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 H 1.09004 * 109.79501 * 179.44666 * 3 2 1 5 5 C 1.52442 * 109.79675 * 58.58017 * 3 2 1 6 6 C 1.39131 * 123.57260 * 48.91563 * 5 3 2 7 7 C 1.32920 * 115.65299 * 179.62972 * 6 5 3 8 8 S 1.75720 * 109.58955 * 0.07760 * 7 6 5 9 9 C 1.34651 * 122.62425 * 228.85214 * 5 3 2 10 10 C 1.51395 * 125.09925 * 0.44867 * 9 5 3 11 11 C 1.53196 * 109.07146 * 341.97399 * 10 9 5 12 12 N 1.46981 * 109.80087 * 300.25755 * 3 2 1 13 13 C 1.34772 * 120.87206 * 344.68226 * 12 3 2 14 14 O 1.21281 * 120.00338 * 354.04089 * 13 12 3 15 15 C 1.50703 * 119.99586 * 174.04557 * 13 12 3 16 16 N 1.46905 * 109.47056 * 180.02562 * 15 13 12 17 17 C 1.46895 * 110.99697 * 293.95221 * 16 15 13 18 18 C 1.46899 * 111.00001 * 169.99859 * 16 15 13 19 19 C 1.50701 * 109.47013 * 189.99591 * 18 16 15 20 20 H 1.08000 * 120.00052 * 0.02562 * 19 18 16 21 21 C 1.37884 * 119.99876 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99701 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99938 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47257 * 90.00085 * 23 21 19 25 25 H 1.48502 * 109.47390 * 209.99972 * 23 21 19 26 26 H 1.48502 * 109.47169 * 329.99901 * 23 21 19 27 27 H 1.09003 * 109.47178 * 292.29364 * 1 2 3 28 28 H 1.08998 * 109.47195 * 52.29279 * 1 2 3 29 29 H 1.08994 * 109.47195 * 172.29514 * 1 2 3 30 30 H 1.09007 * 109.47196 * 240.00323 * 2 1 3 31 31 H 1.09000 * 109.47235 * 120.00447 * 2 1 3 32 32 H 1.08002 * 122.17164 * 359.60840 * 6 5 3 33 33 H 1.08000 * 125.20609 * 180.11401 * 7 6 5 34 34 H 1.09000 * 109.53800 * 222.09992 * 10 9 5 35 35 H 1.08999 * 109.53883 * 101.85252 * 10 9 5 36 36 H 1.09003 * 109.61706 * 165.23830 * 11 10 9 37 37 H 1.08997 * 109.61942 * 285.79320 * 11 10 9 38 38 H 1.09002 * 109.46923 * 299.99810 * 15 13 12 39 39 H 1.08998 * 109.47125 * 59.99732 * 15 13 12 40 40 H 1.09005 * 109.47339 * 60.00033 * 17 16 15 41 41 H 1.08999 * 109.47008 * 180.02562 * 17 16 15 42 42 H 1.09005 * 109.47503 * 299.99887 * 17 16 15 43 43 H 1.09001 * 109.47263 * 309.99873 * 18 16 15 44 44 H 1.08998 * 109.46868 * 69.99975 * 18 16 15 45 45 H 0.97000 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4486 0.0099 5 6 1.5072 2.1785 1.2240 6 6 1.5755 1.6705 2.5174 7 6 1.0690 2.4485 3.4687 8 16 0.4493 3.9283 2.7518 9 6 0.9247 3.3900 1.1460 10 6 0.7105 4.1723 -0.1323 11 6 1.6304 3.6124 -1.2219 12 7 1.5491 2.1442 -1.1945 13 6 1.0374 1.4602 -2.2370 14 8 1.0760 0.2480 -2.2446 15 6 0.4175 2.2017 -3.3933 16 7 -0.0627 1.2375 -4.3922 17 6 1.0579 0.5108 -5.0036 18 6 -0.8797 1.9029 -5.4158 19 6 -1.5525 0.8637 -6.2752 20 1 -1.3898 -0.1860 -6.0802 21 6 -2.3758 1.2531 -7.3105 22 7 -2.9633 0.3462 -8.0601 23 14 -2.6567 3.0687 -7.6481 24 1 -1.6339 3.5579 -8.6071 25 1 -4.0104 3.2609 -8.2274 26 1 -2.5490 3.8308 -6.3781 27 1 -0.3634 0.3899 0.9509 28 1 -0.3633 0.6285 -0.8130 29 1 -0.3633 -1.0183 -0.1378 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.0115 0.7064 2.7344 33 1 1.0428 2.2081 4.5213 34 1 0.9460 5.2226 0.0392 35 1 -0.3284 4.0772 -0.4481 36 1 1.3083 3.9787 -2.1967 37 1 2.6568 3.9258 -1.0310 38 1 -0.4200 2.7998 -3.0342 39 1 1.1625 2.8551 -3.8472 40 1 1.6052 -0.0296 -4.2312 41 1 0.6744 -0.1959 -5.7395 42 1 1.7259 1.2189 -5.4942 43 1 -1.6369 2.5198 -4.9319 44 1 -0.2421 2.5313 -6.0377 45 1 -3.5428 0.6201 -8.7882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:20 Heat of formation + Delta-G solvation = 38.093900 kcal Electronic energy + Delta-G solvation = -25986.012323 eV Core-core repulsion = 22517.615387 eV Total energy + Delta-G solvation = -3468.396936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90356 -38.48832 -36.28368 -35.65878 -33.74173 -32.41679 -31.57520 -29.05356 -28.46587 -27.32713 -25.93117 -24.43203 -23.92360 -22.38001 -21.71658 -20.35613 -19.20283 -18.05433 -17.51714 -16.87807 -16.62256 -16.05702 -15.76204 -15.06321 -14.92848 -14.49251 -14.21594 -14.02295 -13.94314 -13.54735 -13.41669 -13.28937 -12.84236 -12.68609 -12.53012 -12.13875 -12.09516 -11.89918 -11.79679 -11.55720 -11.30339 -11.20785 -11.04129 -10.94296 -10.87523 -10.71943 -10.62990 -10.26711 -9.86667 -9.32329 -8.79537 -8.76010 -8.68385 -8.57383 -8.44843 -7.36706 -6.03809 -4.01163 0.78615 1.39755 1.77118 2.46087 2.81245 2.92050 3.27065 3.34598 3.35378 4.36659 4.41456 4.42398 4.64767 4.76733 4.90438 4.91840 4.99141 5.12792 5.15280 5.21410 5.27941 5.33984 5.42223 5.49111 5.60218 5.61131 5.67483 5.74929 5.94834 5.96844 6.01816 6.21063 6.23643 6.28520 6.29784 6.41871 6.61782 6.74476 6.76751 6.84260 7.01933 7.40474 7.58482 7.88526 8.00270 8.47942 8.66376 9.07002 9.57004 11.09452 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.003253 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.884652 B = 8605.802337 C = 9244.121354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C 0.215 3.785 4 H 0.080 0.920 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.216 4.216 8 S 0.086 5.914 9 C -0.169 4.169 10 C -0.067 4.067 11 C 0.114 3.886 12 N -0.619 5.619 13 C 0.524 3.476 14 O -0.498 6.498 15 C 0.034 3.966 16 N -0.512 5.512 17 C 0.032 3.968 18 C 0.163 3.837 19 C -0.507 4.507 20 H 0.083 0.917 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.268 1.268 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.116 0.884 31 H 0.053 0.947 32 H 0.139 0.861 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.004 0.996 43 H 0.027 0.973 44 H -0.016 1.016 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.995 9.278 22.370 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.109 3.891 4 H 0.098 0.902 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.351 4.351 8 S 0.352 5.648 9 C -0.286 4.286 10 C -0.107 4.107 11 C -0.011 4.011 12 N -0.355 5.355 13 C 0.313 3.687 14 O -0.372 6.372 15 C -0.098 4.098 16 N -0.236 5.236 17 C -0.116 4.116 18 C 0.037 3.963 19 C -0.546 4.546 20 H 0.101 0.899 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.703 3.297 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.193 1.193 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.023 0.977 43 H 0.045 0.955 44 H 0.002 0.998 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.849 9.536 23.043 27.196 hybrid contribution 0.810 0.536 -0.917 1.336 sum 11.660 10.072 22.126 26.962 Atomic orbital electron populations 1.21735 0.95059 1.01850 1.00400 1.22150 0.97589 0.93276 1.03566 1.20105 0.96861 0.91984 0.80145 0.90247 1.19877 1.02462 0.94530 0.95409 1.19907 1.02374 1.01251 0.91195 1.25306 1.08067 0.98462 1.03283 1.84171 1.61276 1.20484 0.98871 1.24610 1.06830 0.99372 0.97813 1.20704 1.01563 0.98329 0.90112 1.21707 0.99888 0.80044 0.99459 1.48174 1.63818 1.06511 1.17024 1.20713 0.76944 0.88240 0.82830 1.90598 1.55114 1.13635 1.77835 1.22073 0.99314 0.94993 0.93419 1.61698 1.20760 1.25593 1.15556 1.22407 0.91822 0.98151 0.99212 1.20235 0.91970 0.94829 0.89261 1.21020 1.26843 0.94713 1.11988 0.89930 1.24900 0.95494 0.97174 0.95798 1.69892 1.31381 1.33031 1.19554 0.86864 0.77747 0.86331 0.78774 1.20362 1.21134 1.19256 0.94611 0.92140 0.93053 0.86661 0.92888 0.84342 0.81914 0.89439 0.89498 0.88551 0.90588 0.88721 0.93183 0.91341 0.90184 0.97737 0.95453 0.99803 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.49 37.16 0.32 -1.62 16 2 C -0.13 -1.63 4.88 -26.73 -0.13 -1.76 16 3 C 0.21 2.43 3.46 -67.95 -0.24 2.20 16 4 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.11 -1.16 4.32 -104.69 -0.45 -1.62 16 6 C -0.12 -1.11 9.22 -41.09 -0.38 -1.49 16 7 C -0.22 -1.87 11.20 28.89 0.32 -1.55 16 8 S 0.09 0.78 23.31 -107.50 -2.51 -1.73 16 9 C -0.17 -1.71 6.39 -35.24 -0.23 -1.93 16 10 C -0.07 -0.57 6.43 -27.44 -0.18 -0.75 16 11 C 0.11 1.01 6.30 -3.63 -0.02 0.99 16 12 N -0.62 -7.40 2.75 -165.50 -0.46 -7.86 16 13 C 0.52 8.03 5.57 -10.99 -0.06 7.97 16 14 O -0.50 -8.98 9.12 5.56 0.05 -8.93 16 15 C 0.03 0.55 3.86 -4.97 -0.02 0.53 16 16 N -0.51 -10.94 4.49 -245.82 -1.10 -12.05 16 17 C 0.03 0.66 9.03 60.06 0.54 1.20 16 18 C 0.16 3.92 3.79 -4.98 -0.02 3.90 16 19 C -0.51 -14.54 9.01 -34.44 -0.31 -14.85 16 20 H 0.08 2.61 7.37 -52.49 -0.39 2.22 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 23 Si 0.88 21.24 27.47 -169.99 -4.67 16.58 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 27 H 0.03 0.49 7.27 -51.93 -0.38 0.11 16 28 H 0.06 1.02 5.22 -51.93 -0.27 0.75 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.12 1.72 5.62 -52.56 -0.30 1.43 16 31 H 0.05 0.57 7.42 -51.93 -0.39 0.18 16 32 H 0.14 1.13 7.50 -52.49 -0.39 0.73 16 33 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.77 5.99 -51.93 -0.31 0.46 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 39 H 0.05 0.72 7.47 -51.93 -0.39 0.33 16 40 H 0.07 1.33 5.88 -51.93 -0.31 1.03 16 41 H 0.08 1.82 6.76 -51.93 -0.35 1.47 16 42 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.03 0.65 6.99 -51.93 -0.36 0.29 16 44 H -0.02 -0.37 7.55 -51.93 -0.39 -0.76 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -32.50 353.43 -10.29 -42.79 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.76 Total: -0.30 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.95 Total: -6.90 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.79 Total: -46.84 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.05 Total: -8.93 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.50 -10.29 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.882 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds