Wall clock time and date at job start Tue Mar 31 2020 13:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 H 1.09004 * 109.79501 * 179.44666 * 3 2 1 5 5 C 1.52442 * 109.79675 * 58.58017 * 3 2 1 6 6 C 1.39131 * 123.57260 * 48.91563 * 5 3 2 7 7 C 1.32920 * 115.65299 * 179.62972 * 6 5 3 8 8 S 1.75720 * 109.58955 * 0.07760 * 7 6 5 9 9 C 1.34651 * 122.62425 * 228.85214 * 5 3 2 10 10 C 1.51395 * 125.09925 * 0.44867 * 9 5 3 11 11 C 1.53196 * 109.07146 * 341.97399 * 10 9 5 12 12 N 1.46981 * 109.80087 * 300.25755 * 3 2 1 13 13 C 1.34772 * 120.87206 * 344.68226 * 12 3 2 14 14 O 1.21281 * 120.00338 * 354.04089 * 13 12 3 15 15 C 1.50703 * 119.99586 * 174.04557 * 13 12 3 16 16 N 1.46905 * 109.47056 * 180.02562 * 15 13 12 17 17 C 1.46895 * 110.99697 * 293.95221 * 16 15 13 18 18 C 1.46899 * 111.00001 * 169.99859 * 16 15 13 19 19 C 1.50701 * 109.47013 * 189.99591 * 18 16 15 20 20 H 1.08000 * 120.00052 * 0.02562 * 19 18 16 21 21 C 1.37884 * 119.99876 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99701 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99938 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47257 * 90.00085 * 23 21 19 25 25 H 1.48502 * 109.47390 * 209.99972 * 23 21 19 26 26 H 1.48502 * 109.47169 * 329.99901 * 23 21 19 27 27 H 1.09003 * 109.47178 * 292.29364 * 1 2 3 28 28 H 1.08998 * 109.47195 * 52.29279 * 1 2 3 29 29 H 1.08994 * 109.47195 * 172.29514 * 1 2 3 30 30 H 1.09007 * 109.47196 * 240.00323 * 2 1 3 31 31 H 1.09000 * 109.47235 * 120.00447 * 2 1 3 32 32 H 1.08002 * 122.17164 * 359.60840 * 6 5 3 33 33 H 1.08000 * 125.20609 * 180.11401 * 7 6 5 34 34 H 1.09000 * 109.53800 * 222.09992 * 10 9 5 35 35 H 1.08999 * 109.53883 * 101.85252 * 10 9 5 36 36 H 1.09003 * 109.61706 * 165.23830 * 11 10 9 37 37 H 1.08997 * 109.61942 * 285.79320 * 11 10 9 38 38 H 1.09002 * 109.46923 * 299.99810 * 15 13 12 39 39 H 1.08998 * 109.47125 * 59.99732 * 15 13 12 40 40 H 1.09005 * 109.47339 * 60.00033 * 17 16 15 41 41 H 1.08999 * 109.47008 * 180.02562 * 17 16 15 42 42 H 1.09005 * 109.47503 * 299.99887 * 17 16 15 43 43 H 1.09001 * 109.47263 * 309.99873 * 18 16 15 44 44 H 1.08998 * 109.46868 * 69.99975 * 18 16 15 45 45 H 0.97000 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4486 0.0099 5 6 1.5072 2.1785 1.2240 6 6 1.5755 1.6705 2.5174 7 6 1.0690 2.4485 3.4687 8 16 0.4493 3.9283 2.7518 9 6 0.9247 3.3900 1.1460 10 6 0.7105 4.1723 -0.1323 11 6 1.6304 3.6124 -1.2219 12 7 1.5491 2.1442 -1.1945 13 6 1.0374 1.4602 -2.2370 14 8 1.0760 0.2480 -2.2446 15 6 0.4175 2.2017 -3.3933 16 7 -0.0627 1.2375 -4.3922 17 6 1.0579 0.5108 -5.0036 18 6 -0.8797 1.9029 -5.4158 19 6 -1.5525 0.8637 -6.2752 20 1 -1.3898 -0.1860 -6.0802 21 6 -2.3758 1.2531 -7.3105 22 7 -2.9633 0.3462 -8.0601 23 14 -2.6567 3.0687 -7.6481 24 1 -1.6339 3.5579 -8.6071 25 1 -4.0104 3.2609 -8.2274 26 1 -2.5490 3.8308 -6.3781 27 1 -0.3634 0.3899 0.9509 28 1 -0.3633 0.6285 -0.8130 29 1 -0.3633 -1.0183 -0.1378 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.0115 0.7064 2.7344 33 1 1.0428 2.2081 4.5213 34 1 0.9460 5.2226 0.0392 35 1 -0.3284 4.0772 -0.4481 36 1 1.3083 3.9787 -2.1967 37 1 2.6568 3.9258 -1.0310 38 1 -0.4200 2.7998 -3.0342 39 1 1.1625 2.8551 -3.8472 40 1 1.6052 -0.0296 -4.2312 41 1 0.6744 -0.1959 -5.7395 42 1 1.7259 1.2189 -5.4942 43 1 -1.6369 2.5198 -4.9319 44 1 -0.2421 2.5313 -6.0377 45 1 -3.5428 0.6201 -8.7882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:19 Heat of formation + Delta-G solvation = 17.144762 kcal Electronic energy + Delta-G solvation = -25986.920745 eV Core-core repulsion = 22517.615387 eV Total energy + Delta-G solvation = -3469.305359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.90527 -39.48852 -37.79337 -36.54220 -34.88830 -34.40921 -32.47049 -30.45917 -29.74127 -28.78711 -26.97787 -25.73071 -25.11769 -23.31043 -22.73970 -22.00204 -20.27204 -18.96332 -18.85022 -18.36376 -17.58378 -17.09895 -16.84981 -16.41405 -16.10605 -15.81734 -15.58829 -15.51660 -15.06400 -14.60418 -14.47927 -14.22508 -14.18027 -13.83300 -13.67504 -13.54119 -13.36936 -12.92696 -12.81503 -12.75983 -12.64030 -12.55564 -12.37966 -12.23788 -12.15879 -11.92119 -11.76656 -11.66594 -11.63273 -11.48653 -10.77214 -9.95524 -9.65722 -9.44838 -9.21276 -8.95877 -8.25599 -6.30108 0.09156 0.71776 1.08770 1.37120 1.40298 1.50845 1.66914 1.75996 1.92965 2.37419 3.07070 3.26466 3.55076 3.69250 3.86540 4.00652 4.16540 4.20689 4.28111 4.31415 4.31869 4.39324 4.47328 4.54163 4.56650 4.63195 4.69309 4.76960 4.80787 4.91345 4.92770 5.02447 5.03451 5.09061 5.16730 5.23967 5.30472 5.40839 5.47224 5.53884 5.55110 5.77050 5.96631 6.29379 6.43319 6.67421 6.76757 7.32617 7.36186 8.91707 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.003253 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.884652 B = 8605.802337 C = 9244.121354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.215 3.785 4 H 0.093 0.907 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.215 4.215 8 S 0.096 5.904 9 C -0.182 4.182 10 C -0.066 4.066 11 C 0.108 3.892 12 N -0.611 5.611 13 C 0.523 3.477 14 O -0.535 6.535 15 C 0.033 3.967 16 N -0.539 5.539 17 C 0.045 3.955 18 C 0.175 3.825 19 C -0.520 4.520 20 H 0.029 0.971 21 C 0.003 3.997 22 N -0.952 5.952 23 Si 0.954 3.046 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.240 1.240 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.185 0.815 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.022 0.978 43 H 0.037 0.963 44 H -0.004 1.004 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.112 12.859 24.241 30.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.110 3.890 4 H 0.111 0.889 5 C -0.135 4.135 6 C -0.161 4.161 7 C -0.350 4.350 8 S 0.362 5.638 9 C -0.300 4.300 10 C -0.106 4.106 11 C -0.016 4.016 12 N -0.346 5.346 13 C 0.312 3.688 14 O -0.412 6.412 15 C -0.097 4.097 16 N -0.263 5.263 17 C -0.104 4.104 18 C 0.048 3.952 19 C -0.558 4.558 20 H 0.048 0.952 21 C -0.194 4.194 22 N -0.593 5.593 23 Si 0.776 3.224 24 H -0.191 1.191 25 H -0.210 1.210 26 H -0.163 1.163 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.167 0.833 33 H 0.202 0.798 34 H 0.131 0.869 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.014 0.986 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.999 13.150 24.964 30.661 hybrid contribution 0.480 -0.668 -1.387 1.613 sum 12.479 12.481 23.577 29.451 Atomic orbital electron populations 1.21609 0.96561 1.00253 0.99578 1.21998 0.96030 0.94636 1.03310 1.20104 0.97529 0.91019 0.80323 0.88904 1.19857 1.03381 0.94886 0.95352 1.20055 1.03022 1.02000 0.90983 1.25625 1.07088 0.98002 1.04305 1.84147 1.60922 1.20558 0.98213 1.24889 1.06614 0.99533 0.98915 1.20758 1.01031 0.99547 0.89242 1.22004 1.01389 0.77794 1.00364 1.48144 1.62352 1.07954 1.16137 1.20556 0.77050 0.87769 0.83389 1.90613 1.56821 1.15089 1.78719 1.22146 1.00706 0.94378 0.92511 1.61479 1.21686 1.27457 1.15702 1.22216 0.91704 0.97861 0.98576 1.19980 0.92431 0.93391 0.89411 1.21275 1.27575 0.93653 1.13281 0.95232 1.25953 0.94912 1.03231 0.95264 1.70076 1.32576 1.36130 1.20535 0.85624 0.77756 0.79113 0.79877 1.19060 1.20990 1.16294 0.93924 0.94577 0.94637 0.89039 0.90933 0.83328 0.79809 0.86943 0.90215 0.87364 0.88482 0.87339 0.90265 0.90646 0.93973 0.95970 0.94517 0.98611 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 8.49 71.98 0.61 -2.99 16 2 C -0.12 -3.04 4.88 30.59 0.15 -2.89 16 3 C 0.22 4.50 3.46 44.71 0.15 4.65 16 4 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 5 C -0.12 -2.31 4.32 -19.91 -0.09 -2.39 16 6 C -0.13 -2.17 9.22 21.31 0.20 -1.98 16 7 C -0.22 -3.16 11.20 66.65 0.75 -2.42 16 8 S 0.10 1.48 23.31 -56.49 -1.32 0.16 16 9 C -0.18 -3.20 6.39 25.08 0.16 -3.04 16 10 C -0.07 -0.92 6.43 30.13 0.19 -0.73 16 11 C 0.11 1.55 6.30 86.34 0.54 2.09 16 12 N -0.61 -13.38 2.75 -795.91 -2.19 -15.57 16 13 C 0.52 15.51 5.57 87.66 0.49 16.00 16 14 O -0.54 -19.59 9.12 -3.03 -0.03 -19.61 16 15 C 0.03 1.02 3.86 85.56 0.33 1.35 16 16 N -0.54 -22.94 4.49 -931.63 -4.18 -27.13 16 17 C 0.04 1.85 9.03 127.69 1.15 3.00 16 18 C 0.17 8.24 3.79 85.56 0.32 8.56 16 19 C -0.52 -30.72 9.01 25.60 0.23 -30.49 16 20 H 0.03 2.00 7.37 -2.91 -0.02 1.98 16 21 C 0.00 0.18 5.47 84.66 0.46 0.64 16 22 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 23 Si 0.95 43.20 27.47 68.60 1.88 45.08 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 27 H 0.04 1.15 7.27 -2.39 -0.02 1.13 16 28 H 0.04 1.22 5.22 -2.39 -0.01 1.21 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 2.78 5.62 -12.44 -0.07 2.71 16 31 H 0.07 1.48 7.42 -2.39 -0.02 1.46 16 32 H 0.15 2.08 7.50 -2.91 -0.02 2.06 16 33 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.30 5.99 -2.39 -0.01 1.29 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 2.99 7.90 -2.39 -0.02 2.97 16 39 H 0.08 1.98 7.47 -2.39 -0.02 1.96 16 40 H 0.08 3.01 5.88 -2.38 -0.01 3.00 16 41 H 0.04 2.02 6.76 -2.39 -0.02 2.01 16 42 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.04 1.67 6.99 -2.39 -0.02 1.65 16 44 H 0.00 -0.17 7.55 -2.39 -0.02 -0.19 16 45 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -74.10 353.43 1.00 -73.09 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.88 Total: 14.96 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.66 Total: -10.62 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -6.07 Total: -103.07 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.03 Total: -19.61 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.32 Total: 0.16 kcal Total: -74.10 1.00 -73.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.238 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds