Wall clock time and date at job start Tue Mar 31 2020 13:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09004 * 109.79339 * 54.19384 * 3 2 1 5 5 C 1.52445 * 109.80448 * 174.99803 * 3 2 1 6 6 C 1.39123 * 123.57276 * 287.94514 * 5 3 2 7 7 C 1.32917 * 115.65268 * 179.76208 * 6 5 3 8 8 S 1.75720 * 109.59208 * 0.06665 * 7 6 5 9 9 C 1.34642 * 122.62107 * 107.93916 * 5 3 2 10 10 C 1.51401 * 125.10152 * 0.50015 * 9 5 3 11 11 C 1.53189 * 109.07065 * 341.91422 * 10 9 5 12 12 N 1.46972 * 109.80371 * 293.32535 * 3 2 1 13 13 C 1.34778 * 120.87810 * 105.49990 * 12 3 2 14 14 O 1.21281 * 119.99717 * 0.02562 * 13 12 3 15 15 C 1.50694 * 120.00171 * 180.02562 * 13 12 3 16 16 N 1.46904 * 109.47045 * 180.02562 * 15 13 12 17 17 C 1.46898 * 111.00168 * 293.95564 * 16 15 13 18 18 C 1.46901 * 111.00115 * 169.99863 * 16 15 13 19 19 C 1.50696 * 109.47485 * 190.00176 * 18 16 15 20 20 H 1.08009 * 119.99660 * 359.97438 * 19 18 16 21 21 C 1.37873 * 120.00171 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00033 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99825 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47106 * 60.00297 * 23 21 19 25 25 H 1.48505 * 109.46723 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47101 * 299.99546 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.08003 * 122.17313 * 359.74438 * 6 5 3 33 33 H 1.08000 * 125.20759 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.53976 * 101.79495 * 10 9 5 35 35 H 1.09000 * 109.53612 * 222.03964 * 10 9 5 36 36 H 1.08991 * 109.62241 * 165.24953 * 11 10 9 37 37 H 1.09001 * 109.62006 * 285.80443 * 11 10 9 38 38 H 1.08998 * 109.47555 * 300.00105 * 15 13 12 39 39 H 1.09003 * 109.47187 * 60.00493 * 15 13 12 40 40 H 1.08993 * 109.47167 * 59.99849 * 17 16 15 41 41 H 1.08995 * 109.46881 * 179.97438 * 17 16 15 42 42 H 1.09006 * 109.46789 * 299.99775 * 17 16 15 43 43 H 1.09004 * 109.47208 * 310.00607 * 18 16 15 44 44 H 1.09006 * 109.47019 * 70.00067 * 18 16 15 45 45 H 0.96999 * 119.99549 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5974 1.9904 0.8318 5 6 3.5593 1.4530 0.1251 6 6 4.2370 1.1334 1.2973 7 6 5.5633 1.1891 1.2286 8 16 6.0498 1.6708 -0.3897 9 6 4.3698 1.7758 -0.9005 10 6 3.9051 2.1748 -2.2851 11 6 2.4522 1.7274 -2.4737 12 7 1.6899 2.0944 -1.2698 13 6 0.6961 3.0029 -1.3299 14 8 0.0778 3.2924 -0.3275 15 6 0.3532 3.6589 -2.6425 16 7 -0.7551 4.6024 -2.4436 17 6 -1.9884 3.8954 -2.0735 18 6 -0.9618 5.4312 -3.6387 19 6 -1.9292 6.5415 -3.3189 20 1 -2.3490 6.6230 -2.3271 21 6 -2.2794 7.4526 -4.2927 22 7 -1.7694 7.3525 -5.5008 23 14 -3.4781 8.8293 -3.8960 24 1 -2.9247 9.6678 -2.8025 25 1 -3.6871 9.6670 -5.1042 26 1 -4.7750 8.2477 -3.4659 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.7191 0.8582 2.2042 33 1 6.2386 0.9722 2.0431 34 1 3.9702 3.2574 -2.3936 35 1 4.5347 1.6937 -3.0336 36 1 2.0253 2.2270 -3.3433 37 1 2.4173 0.6471 -2.6150 38 1 1.2239 4.1959 -3.0187 39 1 0.0570 2.8966 -3.3632 40 1 -1.8275 3.3449 -1.1467 41 1 -2.7925 4.6174 -1.9319 42 1 -2.2602 3.1993 -2.8671 43 1 -0.0097 5.8584 -3.9537 44 1 -1.3674 4.8160 -4.4419 45 1 -2.0155 7.9937 -6.1857 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:24 Heat of formation + Delta-G solvation = 7.955852 kcal Electronic energy + Delta-G solvation = -25547.820907 eV Core-core repulsion = 22078.117087 eV Total energy + Delta-G solvation = -3469.703820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53672 -38.43651 -36.13049 -35.51227 -33.99381 -32.47471 -31.53597 -29.40162 -28.09448 -26.91123 -25.97207 -24.26666 -23.81145 -22.62074 -21.72958 -20.49276 -19.10246 -18.23586 -17.41536 -16.54489 -16.44772 -16.04303 -15.48939 -15.15760 -14.66392 -14.49191 -14.28000 -14.03755 -13.77068 -13.47469 -13.42727 -13.38392 -13.18205 -12.48974 -12.47063 -12.08756 -11.91224 -11.86044 -11.59809 -11.50550 -11.42891 -11.35106 -11.02468 -10.99906 -10.81404 -10.76444 -10.67501 -10.47772 -9.94662 -9.43983 -9.05453 -8.77905 -8.65677 -8.49844 -8.41576 -7.21405 -6.01645 -4.02075 0.79308 1.40539 1.77991 2.45702 2.92720 2.97201 3.36716 3.39673 3.44167 4.38556 4.43155 4.45962 4.71871 4.85472 4.88400 4.95000 5.00877 5.08108 5.12481 5.16675 5.34695 5.38382 5.42815 5.45563 5.53566 5.65431 5.72580 5.79013 5.80548 5.84920 5.87842 6.00067 6.03875 6.24635 6.28595 6.33758 6.41977 6.60948 6.92228 7.23726 7.31060 7.48090 7.81949 8.06280 8.19986 8.47584 8.57628 9.05686 9.61977 11.09437 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.002959 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.693803 B = 9460.370939 C =10161.331462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.208 3.792 4 H 0.109 0.891 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.216 4.216 8 S 0.090 5.910 9 C -0.164 4.164 10 C -0.067 4.067 11 C 0.113 3.887 12 N -0.617 5.617 13 C 0.523 3.477 14 O -0.512 6.512 15 C 0.039 3.961 16 N -0.523 5.523 17 C 0.034 3.966 18 C 0.194 3.806 19 C -0.505 4.505 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.139 0.861 33 H 0.164 0.836 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.004 0.996 43 H 0.030 0.970 44 H -0.008 1.008 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.091 -18.109 8.704 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.102 3.898 4 H 0.127 0.873 5 C -0.128 4.128 6 C -0.150 4.150 7 C -0.351 4.351 8 S 0.356 5.644 9 C -0.282 4.282 10 C -0.108 4.108 11 C -0.012 4.012 12 N -0.353 5.353 13 C 0.311 3.689 14 O -0.386 6.386 15 C -0.092 4.092 16 N -0.248 5.248 17 C -0.114 4.114 18 C 0.069 3.931 19 C -0.544 4.544 20 H 0.083 0.917 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.202 1.202 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.022 0.978 43 H 0.048 0.952 44 H 0.010 0.990 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.285 -17.262 8.767 25.299 hybrid contribution -1.830 -0.005 0.108 1.834 sum 14.455 -17.268 8.875 24.205 Atomic orbital electron populations 1.21701 0.94799 1.01168 1.02747 1.21793 0.96690 0.95232 1.02389 1.19978 0.88019 0.93780 0.88068 0.87343 1.19827 0.96365 1.03829 0.92772 1.19912 0.93374 1.02874 0.98828 1.25307 0.98982 1.10373 1.00483 1.84184 1.06567 1.68028 1.05669 1.24667 0.95144 1.08214 1.00140 1.20722 0.96649 1.02468 0.90916 1.21711 0.90155 1.01038 0.88317 1.48241 1.35681 1.42647 1.08690 1.20958 0.78499 0.77563 0.91845 1.90640 1.49996 1.60983 1.36952 1.21976 0.98606 0.96061 0.92603 1.61854 1.03836 1.19997 1.39114 1.22355 0.92991 0.97422 0.98673 1.19775 0.97218 0.91356 0.84723 1.21122 1.25207 1.10705 0.97352 0.91740 1.24972 0.96688 0.98000 0.94926 1.69944 1.44397 1.37061 1.02679 0.86537 0.81364 0.81820 0.77577 1.20114 1.21385 1.20245 0.92640 0.92268 0.92893 0.90997 0.91746 0.84327 0.81861 0.89334 0.89341 0.88395 0.90648 0.88646 0.93171 0.91709 0.90774 0.97776 0.95239 0.99027 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.74 37.16 0.36 -1.23 16 2 C -0.12 -1.20 5.52 -26.74 -0.15 -1.34 16 3 C 0.21 2.45 2.50 -67.96 -0.17 2.28 16 4 H 0.11 1.51 7.16 -51.93 -0.37 1.13 16 5 C -0.12 -1.26 5.16 -104.70 -0.54 -1.80 16 6 C -0.12 -1.14 9.97 -41.09 -0.41 -1.55 16 7 C -0.22 -1.89 11.20 28.89 0.32 -1.56 16 8 S 0.09 0.82 23.31 -107.50 -2.51 -1.68 16 9 C -0.16 -1.72 6.39 -35.24 -0.23 -1.95 16 10 C -0.07 -0.62 6.43 -27.44 -0.18 -0.79 16 11 C 0.11 1.09 6.18 -3.59 -0.02 1.07 16 12 N -0.62 -7.86 2.22 -165.45 -0.37 -8.23 16 13 C 0.52 8.69 6.74 -10.99 -0.07 8.62 16 14 O -0.51 -10.25 13.81 5.56 0.08 -10.18 16 15 C 0.04 0.69 3.80 -4.98 -0.02 0.67 16 16 N -0.52 -11.84 4.49 -245.83 -1.10 -12.94 16 17 C 0.03 0.72 9.03 60.06 0.54 1.26 16 18 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 19 C -0.51 -14.46 8.46 -34.44 -0.29 -14.76 16 20 H 0.06 1.86 7.12 -52.48 -0.37 1.48 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 23 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.05 0.70 7.27 -51.93 -0.38 0.33 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.06 0.60 7.20 -51.93 -0.37 0.22 16 32 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.89 5.97 -51.93 -0.31 0.58 16 37 H 0.08 0.62 7.25 -51.93 -0.38 0.24 16 38 H 0.10 1.58 7.71 -51.93 -0.40 1.18 16 39 H 0.05 0.80 7.72 -51.93 -0.40 0.40 16 40 H 0.06 1.33 5.88 -51.93 -0.31 1.02 16 41 H 0.07 1.68 6.76 -51.93 -0.35 1.33 16 42 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 43 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 44 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -32.74 368.62 -10.59 -43.33 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.99 Total: -2.26 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.97 Total: -4.56 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.74 Total: -47.16 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.74 -10.59 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.284 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds