Wall clock time and date at job start Tue Mar 31 2020 13:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47434 * 2 1 4 4 H 1.09005 * 109.47008 * 54.99157 * 3 2 1 5 5 C 1.52994 * 109.47460 * 175.00161 * 3 2 1 6 6 S 1.81397 * 109.47234 * 184.99870 * 5 3 2 7 7 C 1.81397 * 103.00188 * 179.97438 * 6 5 3 8 8 N 1.46503 * 109.46714 * 294.99995 * 3 2 1 9 9 C 1.46500 * 120.00112 * 299.99860 * 8 3 2 10 10 C 1.34783 * 120.00084 * 119.99813 * 8 3 2 11 11 O 1.21584 * 119.99866 * 0.02562 * 10 8 3 12 12 N 1.34771 * 120.00064 * 179.97438 * 10 8 3 13 13 C 1.39248 * 120.00085 * 176.72679 * 12 10 8 14 14 C 1.39475 * 119.83221 * 217.49383 * 13 12 10 15 15 C 1.36381 * 120.16143 * 179.76273 * 14 13 12 16 16 C 1.40857 * 119.82948 * 0.51295 * 15 14 13 17 17 C 1.41159 * 120.16282 * 179.71856 * 16 15 14 18 18 H 1.08000 * 120.00127 * 157.84613 * 17 16 15 19 19 C 1.39891 * 120.00163 * 337.84622 * 17 16 15 20 20 N 1.30880 * 119.99959 * 327.72734 * 19 17 16 21 21 Si 1.86802 * 119.99954 * 147.72251 * 19 17 16 22 22 H 1.48500 * 109.47282 * 94.98952 * 21 19 17 23 23 H 1.48507 * 109.47248 * 214.98800 * 21 19 17 24 24 H 1.48501 * 109.47436 * 334.98650 * 21 19 17 25 25 C 1.40864 * 119.67676 * 359.74355 * 16 15 14 26 26 C 1.36376 * 119.82565 * 359.97438 * 25 16 15 27 27 H 1.08996 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47392 * 300.00440 * 1 2 3 29 29 H 1.09000 * 109.47086 * 60.00297 * 1 2 3 30 30 H 1.08994 * 109.47257 * 239.99486 * 2 1 3 31 31 H 1.09000 * 109.47086 * 119.99703 * 2 1 3 32 32 H 1.08996 * 109.47607 * 64.99406 * 5 3 2 33 33 H 1.09002 * 109.46606 * 304.99613 * 5 3 2 34 34 H 1.08999 * 109.46916 * 60.00199 * 7 6 5 35 35 H 1.09002 * 109.47693 * 300.00297 * 7 6 5 36 36 H 1.09000 * 109.47312 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47006 * 89.99874 * 9 8 3 38 38 H 1.08999 * 109.47060 * 210.00670 * 9 8 3 39 39 H 1.08997 * 109.46685 * 329.99854 * 9 8 3 40 40 H 0.97000 * 119.99901 * 356.73994 * 12 10 8 41 41 H 1.07991 * 119.92128 * 0.02562 * 14 13 12 42 42 H 1.07999 * 120.08163 * 180.25814 * 15 14 13 43 43 H 0.97002 * 119.99613 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.09261 * 179.97438 * 25 16 15 45 45 H 1.08007 * 119.91733 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 16 4.1573 3.1524 0.2743 7 6 5.9548 2.9504 0.4113 8 7 1.6525 2.0974 -1.2519 9 6 2.1139 1.5588 -2.5338 10 6 0.8714 3.1955 -1.2243 11 8 0.4888 3.6427 -0.1604 12 7 0.5153 3.7982 -2.3758 13 6 -0.3468 4.8915 -2.3518 14 6 -1.3032 5.0432 -3.3556 15 6 -2.1541 6.1088 -3.3361 16 6 -2.0580 7.0632 -2.3046 17 6 -2.9312 8.1721 -2.2807 18 1 -3.1156 8.6945 -1.3536 19 6 -3.5579 8.5944 -3.4580 20 7 -2.9488 8.4588 -4.6085 21 14 -5.2641 9.3517 -3.3880 22 1 -5.1473 10.8313 -3.3388 23 1 -6.0315 8.9556 -4.5961 24 1 -5.9700 8.8702 -2.1734 25 6 -1.0860 6.9061 -1.2973 26 6 -0.2459 5.8322 -1.3270 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0030 0.9835 -0.7596 33 1 3.8570 0.8800 1.0113 34 1 6.3334 2.4518 -0.4810 35 1 6.1869 2.3485 1.2899 36 1 6.4242 3.9295 0.5068 37 1 1.3914 0.8312 -2.9033 38 1 2.2132 2.3706 -3.2543 39 1 3.0806 1.0740 -2.3972 40 1 0.8593 3.4704 -3.2214 41 1 -1.3729 4.3128 -4.1480 42 1 -2.8969 6.2227 -4.1117 43 1 -3.3833 8.7520 -5.4247 44 1 -1.0062 7.6341 -0.5035 45 1 0.5002 5.7105 -0.5556 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091165471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:59 Heat of formation + Delta-G solvation = -4.969276 kcal Electronic energy + Delta-G solvation = -25028.829951 eV Core-core repulsion = 21558.565655 eV Total energy + Delta-G solvation = -3470.264296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.17081 -37.82041 -36.41199 -34.38084 -33.44431 -32.34639 -30.34246 -29.44341 -29.07162 -28.68246 -26.88787 -24.95936 -23.90372 -21.96522 -21.01464 -20.29074 -19.07633 -18.09005 -17.25672 -16.54917 -16.13412 -15.75584 -15.63361 -15.11958 -14.28153 -14.10950 -14.03234 -13.95161 -13.76333 -13.55112 -13.30259 -12.96537 -12.85119 -12.75713 -12.57785 -12.37675 -12.03243 -11.93118 -11.88982 -11.36909 -11.30930 -11.13245 -11.08025 -10.95096 -10.84794 -10.44694 -10.07100 -9.95535 -9.63150 -9.44827 -9.02638 -8.61186 -8.49719 -7.69833 -7.44041 -7.02798 -6.78102 -4.17564 1.54629 2.50950 2.73117 2.95752 3.09504 3.11468 3.19462 3.27053 3.80498 3.95832 4.34310 4.55998 4.60104 4.78224 4.88516 4.91890 4.95214 4.96600 5.04213 5.24396 5.30513 5.43203 5.49341 5.60520 5.66210 5.71318 5.77953 5.83958 6.02793 6.25181 6.27674 6.53444 6.60565 6.88680 6.99954 7.09498 7.19572 7.34377 7.41541 7.69235 7.95638 8.04810 8.13419 8.36820 8.57646 8.65367 8.93739 9.01538 9.25209 10.11064 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.002848 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.398773 B = 9829.759391 C =10391.780353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.174 3.826 4 H 0.113 0.887 5 C -0.104 4.104 6 S -0.227 6.227 7 C -0.132 4.132 8 N -0.627 5.627 9 C 0.082 3.918 10 C 0.703 3.297 11 O -0.574 6.574 12 N -0.665 5.665 13 C 0.002 3.998 14 C -0.105 4.105 15 C -0.170 4.170 16 C 0.112 3.888 17 C -0.468 4.468 18 H 0.081 0.919 19 C 0.089 3.911 20 N -0.773 5.773 21 Si 0.894 3.106 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.258 1.258 25 C -0.222 4.222 26 C -0.065 4.065 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.389 0.611 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.282 0.718 44 H 0.093 0.907 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.814 -16.464 3.064 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.068 3.932 4 H 0.131 0.869 5 C -0.253 4.253 6 S -0.001 6.001 7 C -0.301 4.301 8 N -0.365 5.365 9 C -0.062 4.062 10 C 0.405 3.595 11 O -0.450 6.450 12 N -0.312 5.312 13 C -0.091 4.091 14 C -0.126 4.126 15 C -0.190 4.190 16 C 0.109 3.891 17 C -0.496 4.496 18 H 0.099 0.901 19 C -0.132 4.132 20 N -0.396 5.396 21 Si 0.717 3.283 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.182 1.182 25 C -0.242 4.242 26 C -0.085 4.085 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.223 0.777 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.974 -15.131 3.590 19.626 hybrid contribution 0.334 -1.004 -0.738 1.290 sum 12.308 -16.134 2.852 20.492 Atomic orbital electron populations 1.21674 0.94666 1.01134 1.02950 1.21851 0.97262 0.95162 1.02219 1.20625 0.90244 0.93755 0.88610 0.86912 1.23949 1.00124 0.96570 1.04697 1.87749 1.04083 1.11483 1.96827 1.23410 0.96247 1.06217 1.04260 1.46909 1.54260 1.29375 1.06005 1.21603 0.99586 0.99320 0.85700 1.15835 0.79159 0.79540 0.84935 1.90893 1.59315 1.65727 1.29103 1.42187 1.49648 1.32421 1.06916 1.16871 0.98827 0.90937 1.02438 1.20136 0.95798 0.98785 0.97875 1.20584 1.01586 0.95117 1.01742 1.17570 0.89496 0.91747 0.90310 1.19472 1.22862 1.12223 0.95076 0.90145 1.25907 0.98644 0.93906 0.94772 1.69961 1.35973 1.33917 0.99747 0.86548 0.82864 0.79540 0.79313 1.19549 1.19985 1.18152 1.20606 1.00326 1.00112 1.03154 1.20353 0.98819 0.92484 0.96880 0.92907 0.92315 0.92389 0.91718 0.90982 0.90066 0.89320 0.90930 0.90884 0.88222 0.92986 0.91421 0.91489 0.77661 0.89510 0.87594 0.90769 0.88868 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.80 37.16 0.36 -1.23 16 2 C -0.12 -1.12 5.36 -26.73 -0.14 -1.26 16 3 C 0.17 2.02 2.03 -67.93 -0.14 1.88 16 4 H 0.11 1.68 6.90 -51.93 -0.36 1.33 16 5 C -0.10 -0.99 5.35 37.15 0.20 -0.79 16 6 S -0.23 -2.88 22.11 -107.50 -2.38 -5.25 16 7 C -0.13 -1.11 10.76 101.05 1.09 -0.03 16 8 N -0.63 -8.34 1.92 -179.67 -0.35 -8.68 16 9 C 0.08 0.78 9.19 59.85 0.55 1.33 16 10 C 0.70 12.99 8.09 -86.92 -0.70 12.29 16 11 O -0.57 -12.97 13.28 5.29 0.07 -12.90 16 12 N -0.66 -12.52 5.17 -14.10 -0.07 -12.59 16 13 C 0.00 0.04 6.25 -83.57 -0.52 -0.48 16 14 C -0.11 -2.49 9.90 -39.79 -0.39 -2.88 16 15 C -0.17 -4.47 8.74 -39.26 -0.34 -4.81 16 16 C 0.11 3.07 5.57 -106.80 -0.59 2.47 16 17 C -0.47 -12.71 8.94 -37.86 -0.34 -13.05 16 18 H 0.08 2.12 8.01 -52.49 -0.42 1.70 16 19 C 0.09 2.24 4.77 -17.34 -0.08 2.16 16 20 N -0.77 -19.93 11.78 55.54 0.65 -19.28 16 21 Si 0.89 18.65 29.66 -169.99 -5.04 13.61 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.22 -5.87 9.74 -39.26 -0.38 -6.25 16 26 C -0.07 -1.65 8.59 -39.79 -0.34 -1.99 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 30 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.65 6.48 -51.93 -0.34 0.31 16 33 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.65 6.32 -51.93 -0.33 0.32 16 39 H 0.07 0.50 6.34 -51.93 -0.33 0.17 16 40 H 0.39 6.00 6.52 -40.82 -0.27 5.74 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.11 2.81 6.53 -52.49 -0.34 2.47 16 43 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 44 H 0.09 2.36 8.06 -52.48 -0.42 1.94 16 45 H 0.10 2.66 6.44 -52.48 -0.34 2.33 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -31.65 376.68 -10.09 -41.75 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.87 Total: 10.30 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -1.78 Total: -12.64 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.24 Total: -40.55 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.04 Total: 13.61 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.38 Total: -5.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.65 -10.09 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091165471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.779 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds