Wall clock time and date at job start Tue Mar 31 2020 13:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 N 1.46502 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99559 * 265.78371 * 4 3 2 6 6 H 1.08004 * 119.99702 * 146.21246 * 5 4 3 7 7 C 1.38808 * 120.00230 * 326.21698 * 5 4 3 8 8 N 1.31618 * 120.00030 * 337.68442 * 7 5 4 9 9 Si 1.86794 * 120.00326 * 157.69122 * 7 5 4 10 10 H 1.48507 * 109.47136 * 59.99512 * 9 7 5 11 11 H 1.48501 * 109.47702 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47134 * 299.99763 * 9 7 5 13 13 C 1.46491 * 120.00205 * 85.78289 * 4 3 2 14 14 C 1.53004 * 109.47100 * 90.00138 * 13 4 3 15 15 C 1.50700 * 109.47475 * 179.97438 * 14 13 4 16 16 O 1.21286 * 119.99742 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00408 * 179.97438 * 15 14 13 18 18 C 1.47066 * 120.87074 * 179.97438 * 17 15 14 19 19 C 1.53194 * 108.56713 * 115.11544 * 18 17 15 20 20 C 1.51395 * 109.06807 * 45.55181 * 19 18 17 21 21 S 1.75901 * 125.06554 * 161.89719 * 20 19 18 22 22 C 1.75718 * 91.11570 * 179.67931 * 21 20 19 23 23 C 1.32919 * 109.58840 * 0.10449 * 22 21 20 24 24 C 1.34648 * 125.09815 * 341.82078 * 20 19 18 25 25 C 1.46978 * 120.86680 * 0.02562 * 17 15 14 26 26 H 1.09003 * 109.46865 * 300.00341 * 1 2 3 27 27 H 1.08999 * 109.47191 * 59.99923 * 1 2 3 28 28 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47224 * 239.99903 * 2 1 3 30 30 H 1.08999 * 109.46874 * 119.99633 * 2 1 3 31 31 H 1.09000 * 109.47206 * 59.99689 * 3 2 1 32 32 H 1.08999 * 109.47180 * 300.00084 * 3 2 1 33 33 H 0.97000 * 120.00412 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47609 * 330.00191 * 13 4 3 35 35 H 1.08997 * 109.47203 * 209.99922 * 13 4 3 36 36 H 1.09007 * 109.46922 * 59.99809 * 14 13 4 37 37 H 1.08997 * 109.46916 * 299.99959 * 14 13 4 38 38 H 1.09000 * 109.62195 * 234.83923 * 18 17 15 39 39 H 1.09000 * 109.62340 * 355.21072 * 18 17 15 40 40 H 1.08998 * 109.53819 * 165.42968 * 19 18 17 41 41 H 1.09004 * 109.53823 * 285.59674 * 19 18 17 42 42 H 1.08001 * 125.19881 * 180.37267 * 22 21 20 43 43 H 1.07998 * 122.17403 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.79588 * 105.49816 * 25 17 15 45 45 H 1.08999 * 109.80032 * 344.63187 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5295 1.1819 6 1 5.1334 1.0166 1.2985 7 6 3.6723 2.2769 2.2307 8 7 2.7988 3.2316 1.9901 9 14 4.2151 1.9279 3.9836 10 1 5.6832 2.1222 4.0952 11 1 3.5214 2.8573 4.9111 12 1 3.8729 0.5270 4.3382 13 6 4.2370 1.3494 -1.2661 14 6 4.4918 2.7556 -1.8126 15 6 5.2454 2.6600 -3.1141 16 8 5.5483 1.5739 -3.5610 17 7 5.5817 3.7811 -3.7821 18 6 6.3175 3.7100 -5.0535 19 6 5.4179 4.2523 -6.1687 20 6 4.7687 5.5370 -5.6997 21 16 4.0323 6.7396 -6.7512 22 6 3.6052 7.7368 -5.3689 23 6 4.0174 7.1484 -4.2506 24 6 4.6674 5.9294 -4.4156 25 6 5.2237 5.1070 -3.2584 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.4372 3.7542 2.7229 34 1 3.6477 0.7813 -1.9859 35 1 5.1895 0.8466 -1.0988 36 1 5.0812 3.3238 -1.0928 37 1 3.5394 3.2585 -1.9799 38 1 7.2224 4.3139 -4.9870 39 1 6.5833 2.6743 -5.2651 40 1 6.0177 4.4500 -7.0570 41 1 4.6475 3.5183 -6.4049 42 1 3.0835 8.6811 -5.4199 43 1 3.8586 7.5882 -3.2771 44 1 6.1094 5.5944 -2.8510 45 1 4.4669 5.0047 -2.4807 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103469477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:14 Heat of formation + Delta-G solvation = 9.956483 kcal Electronic energy + Delta-G solvation = -25164.224488 eV Core-core repulsion = 21694.607422 eV Total energy + Delta-G solvation = -3469.617066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.11830 -38.23014 -36.18486 -35.31404 -32.81056 -32.36628 -31.68807 -29.62393 -29.06999 -25.98388 -25.52454 -24.41346 -23.55312 -22.29953 -21.22633 -19.80553 -18.98259 -18.28970 -17.35920 -16.69648 -16.22839 -16.02364 -15.40348 -14.90476 -14.78102 -14.40731 -14.02947 -13.92245 -13.46597 -13.40037 -13.20811 -13.01411 -12.74901 -12.59192 -12.39128 -12.08551 -11.86550 -11.79580 -11.56373 -11.30808 -11.25046 -10.93976 -10.87195 -10.76757 -10.74339 -10.30690 -10.28612 -9.84775 -9.77459 -9.44691 -9.38468 -8.72792 -8.63682 -8.46048 -8.41624 -6.61236 -5.78228 -3.31233 0.85379 1.46490 1.83933 2.53136 3.01192 3.12002 3.38001 3.43665 3.47271 4.47866 4.52068 4.62318 4.87378 4.94576 5.09733 5.14368 5.26591 5.31641 5.42268 5.50163 5.57482 5.62743 5.78621 5.81481 5.89638 5.91756 5.95948 5.99862 6.07466 6.17556 6.28879 6.36757 6.51462 6.57259 6.59082 6.65761 6.84496 6.89346 6.96162 7.10057 7.32777 7.57633 7.78829 7.85030 8.47965 8.53978 9.20827 9.84506 10.40918 11.21919 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.003154 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.210591 B = 8876.209612 C = 9076.590514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.144 3.856 4 N -0.585 5.585 5 C -0.256 4.256 6 H 0.062 0.938 7 C 0.010 3.990 8 N -0.889 5.889 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.166 3.834 14 C -0.154 4.154 15 C 0.523 3.477 16 O -0.545 6.545 17 N -0.622 5.622 18 C 0.116 3.884 19 C -0.063 4.063 20 C -0.167 4.167 21 S 0.084 5.916 22 C -0.215 4.215 23 C -0.119 4.119 24 C -0.121 4.121 25 C 0.173 3.827 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.017 0.983 33 H 0.254 0.746 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.165 0.835 43 H 0.143 0.857 44 H 0.082 0.918 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 8.281 -15.330 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.018 3.982 4 N -0.304 5.304 5 C -0.386 4.386 6 H 0.079 0.921 7 C -0.190 4.190 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.038 3.962 14 C -0.197 4.197 15 C 0.313 3.687 16 O -0.422 6.422 17 N -0.357 5.357 18 C -0.009 4.009 19 C -0.103 4.103 20 C -0.285 4.285 21 S 0.349 5.651 22 C -0.350 4.350 23 C -0.149 4.149 24 C -0.134 4.134 25 C 0.048 3.952 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.182 0.818 43 H 0.161 0.839 44 H 0.100 0.900 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.902 7.966 -17.009 18.878 hybrid contribution 0.255 0.213 2.339 2.362 sum 2.158 8.179 -14.670 16.934 Atomic orbital electron populations 1.21692 0.97587 0.99901 1.01029 1.22103 0.93645 1.01777 1.00650 1.21021 0.83321 0.92208 1.01662 1.43978 1.01123 1.84366 1.00925 1.19091 1.05712 1.24089 0.89700 0.92059 1.25044 0.99788 0.95145 0.98991 1.69964 1.33205 1.19260 1.30829 0.86483 0.78270 0.77825 0.84901 1.20798 1.21684 1.20964 1.20659 0.96433 0.91157 0.87950 1.22532 0.99900 1.05229 0.92009 1.21487 0.78113 0.82725 0.86364 1.90628 1.55045 1.27107 1.69398 1.48257 1.57793 1.06354 1.23249 1.21493 0.93550 1.03102 0.82739 1.20668 0.99089 0.91936 0.98638 1.24672 1.07017 1.01008 0.95772 1.84118 1.56490 1.13822 1.10667 1.25315 1.09450 1.04941 0.95259 1.19971 1.00121 0.95035 0.99803 1.19917 1.02487 0.96561 0.94419 1.20617 1.00329 0.81264 0.93037 0.93114 0.93684 0.94195 0.94085 0.92537 0.88219 0.96415 0.93582 0.94065 0.93207 0.88653 0.89804 0.91170 0.88152 0.89690 0.89800 0.81783 0.83886 0.89967 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.11 16 2 C -0.14 -2.91 6.26 -26.73 -0.17 -3.08 16 3 C 0.14 3.35 5.25 -4.04 -0.02 3.33 16 4 N -0.58 -14.32 2.45 -173.24 -0.43 -14.75 16 5 C -0.26 -6.83 9.49 -15.06 -0.14 -6.98 16 6 H 0.06 1.65 7.92 -52.48 -0.42 1.23 16 7 C 0.01 0.27 4.93 -17.43 -0.09 0.18 16 8 N -0.89 -24.44 11.32 55.49 0.63 -23.81 16 9 Si 0.90 21.16 29.61 -169.99 -5.03 16.13 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.17 3.61 4.98 -4.04 -0.02 3.59 16 14 C -0.15 -2.92 4.43 -27.88 -0.12 -3.05 16 15 C 0.52 9.19 7.71 -10.99 -0.08 9.11 16 16 O -0.54 -11.03 15.42 5.55 0.09 -10.95 16 17 N -0.62 -8.83 2.92 -173.05 -0.50 -9.34 16 18 C 0.12 1.37 6.40 -3.63 -0.02 1.35 16 19 C -0.06 -0.66 6.43 -27.44 -0.18 -0.84 16 20 C -0.17 -1.92 6.39 -35.24 -0.23 -2.15 16 21 S 0.08 0.83 23.31 -107.50 -2.51 -1.67 16 22 C -0.21 -2.08 11.20 28.89 0.32 -1.76 16 23 C -0.12 -1.27 10.00 -41.09 -0.41 -1.68 16 24 C -0.12 -1.44 5.86 -104.68 -0.61 -2.06 16 25 C 0.17 2.15 6.52 -4.05 -0.03 2.12 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.10 2.60 5.32 -51.93 -0.28 2.33 16 32 H 0.02 0.40 8.10 -51.93 -0.42 -0.03 16 33 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.04 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.05 1.13 8.00 -51.93 -0.42 0.71 16 36 H 0.10 1.89 8.10 -51.92 -0.42 1.47 16 37 H 0.08 1.59 7.57 -51.93 -0.39 1.20 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.28 7.02 -51.93 -0.36 0.91 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.11 1.40 6.16 -51.93 -0.32 1.08 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -29.78 376.02 -10.75 -40.53 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.23 Total: 2.21 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.43 Total: -4.02 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.30 Total: -47.89 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.78 -10.75 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103469477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.483 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds