Wall clock time and date at job start Tue Mar 31 2020 13:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 N 1.46502 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99559 * 265.78371 * 4 3 2 6 6 H 1.08004 * 119.99702 * 146.21246 * 5 4 3 7 7 C 1.38808 * 120.00230 * 326.21698 * 5 4 3 8 8 N 1.31618 * 120.00030 * 337.68442 * 7 5 4 9 9 Si 1.86794 * 120.00326 * 157.69122 * 7 5 4 10 10 H 1.48507 * 109.47136 * 59.99512 * 9 7 5 11 11 H 1.48501 * 109.47702 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47134 * 299.99763 * 9 7 5 13 13 C 1.46491 * 120.00205 * 85.78289 * 4 3 2 14 14 C 1.53004 * 109.47100 * 90.00138 * 13 4 3 15 15 C 1.50700 * 109.47475 * 179.97438 * 14 13 4 16 16 O 1.21286 * 119.99742 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00408 * 179.97438 * 15 14 13 18 18 C 1.47066 * 120.87074 * 179.97438 * 17 15 14 19 19 C 1.53194 * 108.56713 * 115.11544 * 18 17 15 20 20 C 1.51395 * 109.06807 * 45.55181 * 19 18 17 21 21 S 1.75901 * 125.06554 * 161.89719 * 20 19 18 22 22 C 1.75718 * 91.11570 * 179.67931 * 21 20 19 23 23 C 1.32919 * 109.58840 * 0.10449 * 22 21 20 24 24 C 1.34648 * 125.09815 * 341.82078 * 20 19 18 25 25 C 1.46978 * 120.86680 * 0.02562 * 17 15 14 26 26 H 1.09003 * 109.46865 * 300.00341 * 1 2 3 27 27 H 1.08999 * 109.47191 * 59.99923 * 1 2 3 28 28 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47224 * 239.99903 * 2 1 3 30 30 H 1.08999 * 109.46874 * 119.99633 * 2 1 3 31 31 H 1.09000 * 109.47206 * 59.99689 * 3 2 1 32 32 H 1.08999 * 109.47180 * 300.00084 * 3 2 1 33 33 H 0.97000 * 120.00412 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47609 * 330.00191 * 13 4 3 35 35 H 1.08997 * 109.47203 * 209.99922 * 13 4 3 36 36 H 1.09007 * 109.46922 * 59.99809 * 14 13 4 37 37 H 1.08997 * 109.46916 * 299.99959 * 14 13 4 38 38 H 1.09000 * 109.62195 * 234.83923 * 18 17 15 39 39 H 1.09000 * 109.62340 * 355.21072 * 18 17 15 40 40 H 1.08998 * 109.53819 * 165.42968 * 19 18 17 41 41 H 1.09004 * 109.53823 * 285.59674 * 19 18 17 42 42 H 1.08001 * 125.19881 * 180.37267 * 22 21 20 43 43 H 1.07998 * 122.17403 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.79588 * 105.49816 * 25 17 15 45 45 H 1.08999 * 109.80032 * 344.63187 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5295 1.1819 6 1 5.1334 1.0166 1.2985 7 6 3.6723 2.2769 2.2307 8 7 2.7988 3.2316 1.9901 9 14 4.2151 1.9279 3.9836 10 1 5.6832 2.1222 4.0952 11 1 3.5214 2.8573 4.9111 12 1 3.8729 0.5270 4.3382 13 6 4.2370 1.3494 -1.2661 14 6 4.4918 2.7556 -1.8126 15 6 5.2454 2.6600 -3.1141 16 8 5.5483 1.5739 -3.5610 17 7 5.5817 3.7811 -3.7821 18 6 6.3175 3.7100 -5.0535 19 6 5.4179 4.2523 -6.1687 20 6 4.7687 5.5370 -5.6997 21 16 4.0323 6.7396 -6.7512 22 6 3.6052 7.7368 -5.3689 23 6 4.0174 7.1484 -4.2506 24 6 4.6674 5.9294 -4.4156 25 6 5.2237 5.1070 -3.2584 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.4372 3.7542 2.7229 34 1 3.6477 0.7813 -1.9859 35 1 5.1895 0.8466 -1.0988 36 1 5.0812 3.3238 -1.0928 37 1 3.5394 3.2585 -1.9799 38 1 7.2224 4.3139 -4.9870 39 1 6.5833 2.6743 -5.2651 40 1 6.0177 4.4500 -7.0570 41 1 4.6475 3.5183 -6.4049 42 1 3.0835 8.6811 -5.4199 43 1 3.8586 7.5882 -3.2771 44 1 6.1094 5.5944 -2.8510 45 1 4.4669 5.0047 -2.4807 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103469477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:13 Heat of formation + Delta-G solvation = -4.211400 kcal Electronic energy + Delta-G solvation = -25164.838853 eV Core-core repulsion = 21694.607422 eV Total energy + Delta-G solvation = -3470.231432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32312 -39.35330 -37.98771 -36.40506 -34.27321 -34.01542 -33.20300 -30.86994 -30.42467 -27.36647 -27.16461 -25.80074 -24.64071 -23.52035 -22.71205 -21.52227 -20.24486 -19.19595 -18.76785 -18.34004 -17.42123 -17.14118 -16.77450 -16.59951 -15.92768 -15.79378 -15.54755 -15.42967 -14.86681 -14.61834 -14.42109 -14.26825 -13.99580 -13.84377 -13.57004 -13.45023 -13.38493 -13.11881 -12.77444 -12.75241 -12.58974 -12.46735 -12.41496 -12.20607 -12.11103 -11.99455 -11.70905 -11.69319 -11.58745 -11.26724 -10.85654 -10.47566 -9.80766 -9.50381 -9.25571 -8.59739 -7.80595 -5.37603 0.03578 0.66613 1.04322 1.48584 1.51719 1.57717 1.59677 1.69402 1.94212 2.53778 3.26596 3.45065 3.68595 3.74598 3.98139 3.98966 4.19224 4.25493 4.32663 4.34464 4.35414 4.43693 4.49875 4.52994 4.59827 4.71799 4.74656 4.80276 4.82913 4.91701 4.95518 5.09324 5.11457 5.13803 5.23741 5.32051 5.32441 5.39075 5.47554 5.53373 5.56904 5.70532 5.91763 6.30035 6.48653 7.11745 7.19655 7.87934 8.40356 9.16247 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.003154 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.210591 B = 8876.209612 C = 9076.590514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.270 4.270 6 H 0.052 0.948 7 C -0.027 4.027 8 N -0.910 5.910 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.284 1.284 13 C 0.169 3.831 14 C -0.137 4.137 15 C 0.526 3.474 16 O -0.576 6.576 17 N -0.614 5.614 18 C 0.113 3.887 19 C -0.058 4.058 20 C -0.186 4.186 21 S 0.107 5.893 22 C -0.211 4.211 23 C -0.135 4.135 24 C -0.133 4.133 25 C 0.171 3.829 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.021 0.979 33 H 0.253 0.747 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.189 0.811 43 H 0.153 0.847 44 H 0.098 0.902 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 9.322 -16.443 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.400 4.400 6 H 0.070 0.930 7 C -0.225 4.225 8 N -0.554 5.554 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.211 1.211 13 C 0.042 3.958 14 C -0.180 4.180 15 C 0.316 3.684 16 O -0.456 6.456 17 N -0.347 5.347 18 C -0.011 4.011 19 C -0.098 4.098 20 C -0.304 4.304 21 S 0.373 5.627 22 C -0.346 4.346 23 C -0.165 4.165 24 C -0.146 4.146 25 C 0.046 3.954 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.206 0.794 43 H 0.171 0.829 44 H 0.116 0.884 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.733 9.039 -18.153 20.353 hybrid contribution 0.318 -0.053 2.593 2.613 sum 2.051 8.986 -15.560 18.085 Atomic orbital electron populations 1.21623 0.94741 1.01630 1.01455 1.21966 0.96130 0.99473 0.99824 1.20957 0.82801 0.93741 1.00450 1.44120 1.01692 1.84808 1.01211 1.19215 1.05754 1.24042 0.91006 0.93010 1.25608 1.00132 0.94999 1.01779 1.70071 1.34044 1.19814 1.31430 0.85602 0.78043 0.77312 0.81050 1.20254 1.21556 1.21070 1.20564 0.95417 0.92667 0.87127 1.22162 1.00047 1.02945 0.92818 1.21034 0.78137 0.83219 0.86037 1.90615 1.56533 1.28378 1.70082 1.48204 1.56767 1.06063 1.23667 1.21691 0.94387 1.03152 0.81853 1.20637 0.98864 0.91331 0.98931 1.24869 1.07537 1.01763 0.96202 1.84036 1.55688 1.12899 1.10067 1.25681 1.08567 1.05572 0.94784 1.20106 1.00693 0.94947 1.00793 1.19938 1.03309 0.97164 0.94236 1.20704 1.00844 0.80488 0.93327 0.93530 0.92426 0.91811 0.93718 0.94457 0.90790 0.96087 0.93803 0.94009 0.94616 0.89662 0.89861 0.89043 0.89146 0.86992 0.90768 0.79387 0.82930 0.88368 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.91 71.98 0.71 -3.77 16 2 C -0.13 -5.48 6.26 30.60 0.19 -5.29 16 3 C 0.15 6.90 5.25 86.38 0.45 7.35 16 4 N -0.60 -29.95 2.45 -702.01 -1.72 -31.67 16 5 C -0.27 -14.70 9.49 84.03 0.80 -13.90 16 6 H 0.05 2.86 7.92 -2.91 -0.02 2.84 16 7 C -0.03 -1.47 4.93 84.86 0.42 -1.06 16 8 N -0.91 -50.59 11.32 21.65 0.25 -50.34 16 9 Si 0.95 43.76 29.61 68.60 2.03 45.80 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.17 7.57 4.98 86.38 0.43 8.00 16 14 C -0.14 -5.33 4.43 29.85 0.13 -5.20 16 15 C 0.53 18.71 7.71 87.66 0.68 19.38 16 16 O -0.58 -23.69 15.42 -3.05 -0.05 -23.74 16 17 N -0.61 -17.17 2.92 -819.78 -2.39 -19.56 16 18 C 0.11 2.53 6.40 86.34 0.55 3.09 16 19 C -0.06 -1.12 6.43 30.13 0.19 -0.93 16 20 C -0.19 -3.95 6.39 25.08 0.16 -3.79 16 21 S 0.11 1.89 23.31 -56.49 -1.32 0.57 16 22 C -0.21 -3.58 11.20 66.65 0.75 -2.83 16 23 C -0.14 -2.66 10.00 21.31 0.21 -2.45 16 24 C -0.13 -3.00 5.86 -19.90 -0.12 -3.11 16 25 C 0.17 4.14 6.52 86.12 0.56 4.70 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 3.94 5.32 -2.39 -0.01 3.92 16 32 H 0.02 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.04 1.84 8.03 -2.39 -0.02 1.82 16 35 H 0.04 1.67 8.00 -2.39 -0.02 1.65 16 36 H 0.09 3.47 8.10 -2.38 -0.02 3.45 16 37 H 0.08 3.22 7.57 -2.39 -0.02 3.20 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 2.25 7.02 -2.39 -0.02 2.23 16 40 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 44 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.10 2.52 6.16 -2.39 -0.01 2.51 16 Total: -1.00 -63.83 376.02 3.89 -59.94 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.97 Total: 18.81 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.12 Total: 0.19 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -3.87 Total: -101.58 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.57 kcal Total: -63.83 3.89 -59.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103469477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.732 kcal (2) G-P(sol) polarization free energy of solvation -63.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds