Wall clock time and date at job start Tue Mar 31 2020 13:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47399 * 2 1 4 4 N 1.46501 * 109.47055 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99742 * 271.37781 * 4 3 2 6 6 H 1.08000 * 120.00008 * 40.32914 * 5 4 3 7 7 C 1.38808 * 119.99908 * 220.32354 * 5 4 3 8 8 N 1.31623 * 120.00100 * 18.27119 * 7 5 4 9 9 Si 1.86804 * 120.00122 * 198.27068 * 7 5 4 10 10 H 1.48492 * 109.47089 * 59.99994 * 9 7 5 11 11 H 1.48492 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46681 * 300.00286 * 9 7 5 13 13 C 1.46492 * 120.00285 * 91.37947 * 4 3 2 14 14 C 1.53003 * 109.47482 * 269.99826 * 13 4 3 15 15 C 1.50698 * 109.47128 * 179.97438 * 14 13 4 16 16 O 1.21294 * 120.00475 * 0.02562 * 15 14 13 17 17 N 1.34785 * 119.99612 * 180.02562 * 15 14 13 18 18 C 1.40142 * 119.99610 * 184.89269 * 17 15 14 19 19 C 1.38645 * 120.10137 * 20.70674 * 18 17 15 20 20 C 1.38254 * 120.00714 * 179.97438 * 19 18 17 21 21 C 1.38293 * 120.21021 * 359.97438 * 20 19 18 22 22 C 1.38198 * 120.20082 * 359.97438 * 21 20 19 23 23 C 1.38782 * 119.98983 * 0.02562 * 22 21 20 24 24 S 1.76198 * 120.10812 * 180.02562 * 23 22 21 25 25 C 1.81399 * 102.99889 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.46733 * 59.99427 * 1 2 3 27 27 H 1.08995 * 109.47288 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46421 * 299.99837 * 1 2 3 29 29 H 1.09001 * 109.46915 * 239.99976 * 2 1 3 30 30 H 1.09002 * 109.47077 * 120.00486 * 2 1 3 31 31 H 1.09002 * 109.47201 * 60.00640 * 3 2 1 32 32 H 1.09002 * 109.47403 * 300.00286 * 3 2 1 33 33 H 0.97001 * 120.00379 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.47186 * 149.99738 * 13 4 3 35 35 H 1.08999 * 109.47528 * 30.00099 * 13 4 3 36 36 H 1.09001 * 109.46635 * 60.00032 * 14 13 4 37 37 H 1.08992 * 109.46941 * 299.99933 * 14 13 4 38 38 H 0.96999 * 119.99953 * 4.88947 * 17 15 14 39 39 H 1.08007 * 119.99821 * 0.25349 * 19 18 17 40 40 H 1.08000 * 119.89304 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.90255 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.00800 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47424 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.47459 * 300.00515 * 25 24 23 45 45 H 1.09006 * 109.47318 * 60.00217 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1903 1.4136 1.1848 6 1 3.8430 0.7886 1.9942 7 6 5.3311 2.1878 1.3459 8 7 5.5601 3.1991 0.5353 9 14 6.5415 1.7942 2.7133 10 1 7.0655 0.4171 2.5292 11 1 7.6668 2.7622 2.6720 12 1 5.8538 1.8909 4.0259 13 6 4.2371 1.4730 -1.2692 14 6 4.4919 0.0416 -1.7458 15 6 5.2444 0.0733 -3.0511 16 8 5.5475 1.1361 -3.5508 17 7 5.5805 -1.0795 -3.6633 18 6 6.3680 -1.0536 -4.8222 19 6 7.1501 0.0552 -5.1068 20 6 7.9267 0.0785 -6.2504 21 6 7.9271 -1.0022 -7.1133 22 6 7.1517 -2.1124 -6.8375 23 6 6.3690 -2.1446 -5.6919 24 16 5.3796 -3.5586 -5.3369 25 6 5.7267 -4.6609 -6.7351 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6769 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 6.3571 3.7404 0.6481 34 1 5.1896 1.9836 -1.1268 35 1 3.6478 2.0052 -2.0160 36 1 3.5394 -0.4688 -1.8882 37 1 5.0812 -0.4904 -0.9991 38 1 5.2774 -1.9270 -3.3016 39 1 7.1562 0.8992 -4.4328 40 1 8.5349 0.9433 -6.4705 41 1 8.5354 -0.9786 -8.0055 42 1 7.1547 -2.9548 -7.5133 43 1 5.1589 -5.5842 -6.6196 44 1 5.4382 -4.1705 -7.6648 45 1 6.7919 -4.8908 -6.7609 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103469497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:21 Heat of formation + Delta-G solvation = -12.163496 kcal Electronic energy + Delta-G solvation = -24786.616858 eV Core-core repulsion = 21316.040598 eV Total energy + Delta-G solvation = -3470.576260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65842 -39.52193 -37.98911 -35.91083 -34.62574 -33.32789 -32.28757 -31.68299 -30.17544 -29.66335 -27.31495 -26.10851 -24.23936 -23.80032 -22.64225 -21.78927 -21.23199 -19.24295 -18.79265 -17.99828 -17.78724 -17.07066 -16.56770 -16.38106 -15.96348 -15.86503 -15.48296 -15.24111 -14.93389 -14.82519 -14.74158 -14.39238 -14.29549 -14.09287 -13.65677 -13.36679 -13.27876 -13.08037 -12.98105 -12.85927 -12.60826 -12.49190 -12.39757 -12.18036 -12.02606 -11.85076 -11.69101 -11.52909 -11.22435 -11.20884 -10.78681 -10.63684 -10.49443 -9.34529 -8.52590 -8.30181 -7.79887 -5.51351 0.12506 0.30078 0.50040 1.44770 1.46008 1.48140 1.54922 1.56366 1.98155 2.50532 2.74037 3.25566 3.54642 3.80440 3.95287 4.12738 4.23125 4.27682 4.29690 4.31419 4.37467 4.39270 4.43879 4.49651 4.54515 4.71808 4.78778 4.83912 4.88763 4.90124 5.02863 5.11297 5.19325 5.25050 5.27085 5.29390 5.42224 5.48414 5.55377 5.65597 5.67686 5.84102 5.96482 6.31411 6.48794 7.02725 7.18445 7.85224 8.40781 9.14293 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003489 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.798562 B = 8023.958316 C = 9279.082008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.142 3.858 4 N -0.599 5.599 5 C -0.271 4.271 6 H 0.061 0.939 7 C -0.034 4.034 8 N -0.918 5.918 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.271 1.271 13 C 0.172 3.828 14 C -0.140 4.140 15 C 0.518 3.482 16 O -0.548 6.548 17 N -0.661 5.661 18 C 0.150 3.850 19 C -0.153 4.153 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.130 4.130 24 S -0.155 6.155 25 C -0.129 4.129 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.250 0.750 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.420 0.580 39 H 0.127 0.873 40 H 0.142 0.858 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.126 0.874 44 H 0.096 0.904 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -17.292 -16.337 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.016 3.984 4 N -0.319 5.319 5 C -0.402 4.402 6 H 0.078 0.922 7 C -0.232 4.232 8 N -0.561 5.561 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.223 1.223 12 H -0.196 1.196 13 C 0.045 3.955 14 C -0.182 4.182 15 C 0.308 3.692 16 O -0.426 6.426 17 N -0.306 5.306 18 C 0.050 3.950 19 C -0.175 4.175 20 C -0.127 4.127 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.245 4.245 24 S 0.085 5.915 25 C -0.297 4.297 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.258 0.742 39 H 0.145 0.855 40 H 0.160 0.840 41 H 0.178 0.822 42 H 0.176 0.824 43 H 0.145 0.855 44 H 0.114 0.886 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.000 -16.704 -15.674 22.906 hybrid contribution 1.444 0.354 0.088 1.490 sum 1.445 -16.350 -15.586 22.635 Atomic orbital electron populations 1.21672 0.94617 1.01953 1.01655 1.21999 0.96098 0.98029 1.00965 1.21075 0.83682 0.95218 0.98379 1.43946 1.00690 1.85700 1.01602 1.19202 1.08127 1.19502 0.93333 0.92183 1.26038 1.02667 0.94539 0.99941 1.70136 1.27293 1.17449 1.41256 0.85514 0.78629 0.77444 0.79916 1.20060 1.22299 1.19641 1.20358 0.98176 0.91506 0.85450 1.22301 1.00679 1.03454 0.91752 1.21443 0.78380 0.82797 0.86595 1.90598 1.54251 1.31495 1.66235 1.43713 1.50863 1.10227 1.25751 1.17631 0.94068 0.95357 0.87976 1.21617 0.97092 0.98578 1.00241 1.21395 0.98043 0.99799 0.93502 1.21394 0.99698 0.92483 1.00494 1.21359 0.96482 1.00316 0.95256 1.21548 1.05539 0.98395 0.98991 1.85395 1.57263 1.12181 1.36637 1.23793 1.07157 1.01046 0.97748 0.92639 0.91650 0.92978 0.92576 0.93421 0.94812 0.94778 0.94074 0.92192 0.96360 0.87720 0.88981 0.74210 0.85512 0.83994 0.82246 0.82434 0.85520 0.88555 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.13 -4.43 6.26 30.59 0.19 -4.23 16 3 C 0.14 6.01 5.71 86.38 0.49 6.50 16 4 N -0.60 -30.10 2.41 -702.00 -1.69 -31.79 16 5 C -0.27 -14.82 9.45 84.03 0.79 -14.03 16 6 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 7 C -0.03 -1.91 5.01 84.86 0.43 -1.49 16 8 N -0.92 -55.76 11.47 21.65 0.25 -55.51 16 9 Si 0.96 44.93 29.59 68.60 2.03 46.96 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.17 8.55 4.62 86.38 0.40 8.95 16 14 C -0.14 -5.49 6.03 29.85 0.18 -5.31 16 15 C 0.52 20.15 7.68 87.65 0.67 20.82 16 16 O -0.55 -25.27 12.92 -3.07 -0.04 -25.31 16 17 N -0.66 -21.04 5.23 -303.00 -1.58 -22.62 16 18 C 0.15 4.67 6.50 38.22 0.25 4.92 16 19 C -0.15 -5.05 8.77 22.37 0.20 -4.85 16 20 C -0.11 -2.65 10.04 22.29 0.22 -2.43 16 21 C -0.12 -2.28 10.04 22.27 0.22 -2.06 16 22 C -0.11 -2.09 9.36 22.39 0.21 -1.88 16 23 C -0.13 -3.16 6.12 22.71 0.14 -3.03 16 24 S -0.16 -3.01 21.22 -56.49 -1.20 -4.21 16 25 C -0.13 -1.22 9.15 113.37 1.04 -0.18 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.82 6.35 -2.39 -0.02 1.80 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 1.49 8.05 -2.39 -0.02 1.47 16 32 H 0.03 1.41 7.88 -2.39 -0.02 1.39 16 33 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.06 3.51 5.56 -2.38 -0.01 3.50 16 35 H 0.02 0.92 7.84 -2.39 -0.02 0.90 16 36 H 0.10 3.56 6.35 -2.39 -0.02 3.54 16 37 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 38 H 0.42 11.29 7.53 -92.71 -0.70 10.59 16 39 H 0.13 5.03 5.48 -2.91 -0.02 5.02 16 40 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.16 1.84 5.88 -2.91 -0.02 1.82 16 43 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.10 0.74 7.75 -2.39 -0.02 0.72 16 45 H 0.10 0.71 7.75 -2.39 -0.02 0.69 16 Total: -1.00 -71.07 376.39 4.21 -66.86 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.29 Total: 26.92 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 6.15 Total: -1.30 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -3.03 Total: -109.93 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.04 Total: -25.31 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -1.20 Total: -4.21 kcal Total: -71.07 4.21 -66.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103469497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.693 kcal (2) G-P(sol) polarization free energy of solvation -71.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds