Wall clock time and date at job start Tue Mar 31 2020 13:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47107 * 2 1 4 4 N 1.46498 * 109.46817 * 179.97438 * 3 2 1 5 5 C 1.34778 * 119.99563 * 82.41053 * 4 3 2 6 6 O 1.21706 * 119.99792 * 182.36795 * 5 4 3 7 7 C 1.46580 * 120.00401 * 2.36379 * 5 4 3 8 8 C 1.36649 * 125.45817 * 172.56087 * 7 5 4 9 9 C 1.37477 * 113.29287 * 180.02562 * 8 7 5 10 10 C 1.33810 * 115.10416 * 0.02562 * 9 8 7 11 11 S 1.70616 * 110.95391 * 0.02562 * 10 9 8 12 12 C 1.46495 * 120.00328 * 262.40308 * 4 3 2 13 13 C 1.53039 * 109.46662 * 240.07270 * 12 4 3 14 14 C 1.53185 * 109.31751 * 178.61768 * 13 12 4 15 15 N 1.46925 * 108.77829 * 54.63140 * 14 13 12 16 16 C 1.36934 * 120.63056 * 126.41530 * 15 14 13 17 17 H 1.08001 * 120.00018 * 324.30373 * 16 15 14 18 18 C 1.38817 * 119.99844 * 144.30656 * 16 15 14 19 19 N 1.31616 * 119.99967 * 3.14637 * 18 16 15 20 20 Si 1.86803 * 119.99680 * 183.14487 * 18 16 15 21 21 H 1.48497 * 109.47299 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46907 * 120.00193 * 20 18 16 23 23 H 1.48500 * 109.46839 * 239.99722 * 20 18 16 24 24 C 1.46927 * 118.73777 * 306.39800 * 15 14 13 25 25 C 1.53049 * 109.45964 * 120.00217 * 12 4 3 26 26 H 1.09001 * 109.46790 * 60.00212 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46686 * 300.00312 * 1 2 3 29 29 H 1.08997 * 109.46686 * 239.99688 * 2 1 3 30 30 H 1.09005 * 109.46691 * 120.00305 * 2 1 3 31 31 H 1.08998 * 109.46870 * 60.00162 * 3 2 1 32 32 H 1.08999 * 109.47007 * 300.00106 * 3 2 1 33 33 H 1.07999 * 123.35629 * 0.27396 * 8 7 5 34 34 H 1.08005 * 122.44469 * 180.02562 * 9 8 7 35 35 H 1.07999 * 124.52315 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46145 * 0.03370 * 12 4 3 37 37 H 1.09010 * 109.49195 * 298.56801 * 13 12 4 38 38 H 1.09004 * 109.49599 * 58.65805 * 13 12 4 39 39 H 1.09004 * 109.58603 * 294.84474 * 14 13 12 40 40 H 1.09000 * 109.70553 * 174.49224 * 14 13 12 41 41 H 0.96998 * 119.99723 * 180.02562 * 19 18 16 42 42 H 1.09009 * 109.58352 * 293.81535 * 24 15 14 43 43 H 1.09003 * 109.70350 * 173.46672 * 24 15 14 44 44 H 1.09006 * 109.49354 * 301.34229 * 25 12 4 45 45 H 1.09004 * 109.49562 * 61.43370 * 25 12 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1793 1.2880 -1.1561 6 8 5.3956 1.2447 -1.1503 7 6 3.4479 1.1722 -2.4211 8 6 4.0131 1.1570 -3.6651 9 6 3.0924 1.0390 -4.6792 10 6 1.8171 0.9607 -4.2817 11 16 1.7024 1.0330 -2.5810 12 6 4.2371 1.6103 1.2584 13 6 5.1156 2.8605 1.1743 14 6 5.8530 3.0521 2.5032 15 7 6.5870 1.8191 2.8189 16 6 7.9284 1.8559 3.0914 17 1 8.5666 2.5530 2.5688 18 6 8.4679 0.9973 4.0394 19 7 7.7018 0.1057 4.6314 20 14 10.2811 1.1074 4.4748 21 1 10.9178 2.1845 3.6750 22 1 10.4253 1.4140 5.9207 23 1 10.9416 -0.1886 4.1754 24 6 5.8541 0.5457 2.8369 25 6 5.1168 0.3822 1.5042 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.0775 1.2266 -3.8346 34 1 3.3776 1.0116 -5.7205 35 1 0.9730 0.8645 -4.9485 36 1 3.5283 1.7193 2.0793 37 1 5.8412 2.7418 0.3694 38 1 4.4909 3.7315 0.9759 39 1 5.1326 3.2611 3.2940 40 1 6.5536 3.8828 2.4184 41 1 8.0787 -0.4940 5.2941 42 1 5.1337 0.5503 3.6550 43 1 6.5539 -0.2792 2.9710 44 1 4.4927 -0.5108 1.5407 45 1 5.8422 0.2868 0.6963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132023960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:58 Heat of formation + Delta-G solvation = 26.590183 kcal Electronic energy + Delta-G solvation = -26082.493855 eV Core-core repulsion = 22613.598081 eV Total energy + Delta-G solvation = -3468.895775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18766 -37.89980 -36.70604 -36.11027 -33.49633 -32.04305 -30.44813 -29.72458 -29.05458 -26.39454 -25.58573 -24.28559 -22.59128 -22.16134 -21.74040 -20.39588 -19.36273 -19.07573 -17.60730 -16.73840 -16.35036 -15.77722 -15.25894 -15.09449 -14.84749 -14.63194 -13.76843 -13.68237 -13.48826 -13.30280 -13.12515 -12.93096 -12.79159 -12.62402 -12.55312 -12.38186 -12.20744 -11.76614 -11.60184 -11.39375 -11.12524 -11.01086 -10.83242 -10.72005 -10.60689 -10.26828 -10.06303 -9.94568 -9.69653 -9.55809 -9.25704 -8.93782 -8.52160 -8.41505 -8.23265 -6.46042 -5.70857 -3.22904 0.48412 1.42479 1.86028 2.37832 3.08306 3.35344 3.42486 3.49426 3.52298 4.45703 4.55429 4.65936 4.76690 4.87490 5.05507 5.18956 5.22507 5.35299 5.41302 5.44517 5.48895 5.51312 5.66820 5.72118 5.81723 5.85755 5.88322 5.91051 6.07440 6.12826 6.20660 6.26370 6.38373 6.43803 6.61394 6.69198 6.83507 6.91409 7.09435 7.15260 7.48220 7.66100 7.87536 7.89068 8.38587 8.61870 9.33145 9.92102 10.51934 11.35824 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.003485 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.555342 B = 8033.195686 C = 8715.009610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.154 4.154 3 C 0.096 3.904 4 N -0.606 5.606 5 C 0.583 3.417 6 O -0.508 6.508 7 C -0.264 4.264 8 C -0.062 4.062 9 C -0.150 4.150 10 C -0.277 4.277 11 S 0.234 5.766 12 C 0.162 3.838 13 C -0.148 4.148 14 C 0.152 3.848 15 N -0.592 5.592 16 C -0.248 4.248 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.906 5.906 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.173 3.827 25 C -0.156 4.156 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.015 0.985 40 H 0.055 0.945 41 H 0.253 0.747 42 H 0.012 0.988 43 H 0.099 0.901 44 H 0.043 0.957 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.532 1.276 -14.575 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C -0.029 4.029 4 N -0.338 5.338 5 C 0.370 3.630 6 O -0.385 6.385 7 C -0.384 4.384 8 C -0.095 4.095 9 C -0.181 4.181 10 C -0.413 4.413 11 S 0.503 5.497 12 C 0.061 3.939 13 C -0.188 4.188 14 C 0.024 3.976 15 N -0.314 5.314 16 C -0.378 4.378 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.047 3.953 25 C -0.196 4.196 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.031 0.969 43 H 0.117 0.883 44 H 0.061 0.939 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.024 1.105 -13.456 23.328 hybrid contribution 1.814 0.010 -1.037 2.090 sum -17.210 1.115 -14.492 22.527 Atomic orbital electron populations 1.21731 0.94681 1.02301 1.01851 1.22223 0.96617 0.96859 1.03644 1.21975 0.80752 0.97531 1.02691 1.48208 1.05710 1.72061 1.07803 1.16990 0.86841 0.77231 0.81926 1.90857 1.12483 1.49211 1.85957 1.24899 0.97272 1.17964 0.98301 1.20784 1.01558 0.97088 0.90054 1.19978 0.91880 1.05553 1.00707 1.26025 1.01644 1.08639 1.05006 1.83869 1.02868 1.66416 0.96589 1.21194 0.93131 0.97344 0.82230 1.22466 0.99244 0.95043 1.02044 1.20851 0.94132 0.90651 0.91928 1.43978 1.05654 1.00439 1.81349 1.19213 0.83612 1.19924 1.15018 0.91923 1.25303 0.98122 0.99135 0.96535 1.69905 1.34392 1.21766 1.29053 0.86202 0.85036 0.77515 0.77988 1.20224 1.21590 1.21694 1.20891 0.94201 0.90901 0.89296 1.22705 0.99023 0.94392 1.03438 0.92611 0.92059 0.92214 0.90933 0.90445 0.88731 0.90654 0.83122 0.84574 0.82310 0.90401 0.90130 0.93621 0.96679 0.92633 0.93697 0.96941 0.88260 0.93877 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.76 37.16 0.36 -0.67 16 2 C -0.15 -1.50 5.17 -26.73 -0.14 -1.63 16 3 C 0.10 1.04 4.96 -4.04 -0.02 1.02 16 4 N -0.61 -9.15 2.44 -167.63 -0.41 -9.56 16 5 C 0.58 9.82 6.99 -12.90 -0.09 9.73 16 6 O -0.51 -10.65 13.09 5.18 0.07 -10.59 16 7 C -0.26 -3.59 6.11 -36.79 -0.22 -3.81 16 8 C -0.06 -0.78 10.02 -40.43 -0.41 -1.19 16 9 C -0.15 -1.53 10.15 -41.41 -0.42 -1.95 16 10 C -0.28 -2.50 10.92 29.18 0.32 -2.18 16 11 S 0.23 2.21 14.31 -107.50 -1.54 0.68 16 12 C 0.16 2.89 2.51 -67.89 -0.17 2.72 16 13 C -0.15 -2.85 5.27 -26.62 -0.14 -2.99 16 14 C 0.15 3.33 6.52 -3.72 -0.02 3.30 16 15 N -0.59 -15.49 3.00 -172.32 -0.52 -16.00 16 16 C -0.25 -7.08 9.55 -15.06 -0.14 -7.23 16 17 H 0.06 1.79 7.83 -52.49 -0.41 1.37 16 18 C 0.01 0.20 5.30 -17.43 -0.09 0.11 16 19 N -0.91 -26.67 10.68 55.49 0.59 -26.07 16 20 Si 0.90 22.31 29.55 -169.99 -5.02 17.28 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C 0.17 4.31 5.25 -3.71 -0.02 4.29 16 25 C -0.16 -3.26 5.26 -26.61 -0.14 -3.41 16 26 H 0.05 0.33 7.14 -51.93 -0.37 -0.04 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.76 6.03 -45.56 -0.27 0.49 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.89 7.77 -51.93 -0.40 0.49 16 32 H 0.08 0.73 4.41 -21.81 -0.10 0.64 16 33 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 34 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.08 1.29 7.70 -51.93 -0.40 0.89 16 37 H 0.08 1.78 6.29 -51.92 -0.33 1.45 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.01 0.32 8.14 -51.92 -0.42 -0.11 16 43 H 0.10 2.80 5.98 -51.93 -0.31 2.49 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.91 6.13 -51.93 -0.32 1.59 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -32.45 354.83 -9.51 -41.96 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.69 Total: 0.83 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.35 Total: -3.88 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.33 Total: -51.64 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.54 Total: 0.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.45 -9.51 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132023960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.555 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds