Wall clock time and date at job start Tue Mar 31 2020 14:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.05199 * 2 1 4 4 C 1.54086 * 110.16003 * 238.53353 * 2 1 3 5 5 C 1.54267 * 106.61631 * 240.87555 * 4 2 1 6 6 C 1.54889 * 104.20015 * 336.28275 * 5 4 2 7 7 C 1.54267 * 110.03217 * 121.41509 * 2 1 3 8 8 H 1.08999 * 110.48523 * 24.08631 * 7 2 1 9 9 N 1.46499 * 110.48644 * 261.57631 * 7 2 1 10 10 C 1.34774 * 120.00030 * 156.84171 * 9 7 2 11 11 O 1.21594 * 120.00110 * 0.02562 * 10 9 7 12 12 N 1.34776 * 120.00013 * 179.97438 * 10 9 7 13 13 C 1.40136 * 120.00130 * 175.62859 * 12 10 9 14 14 C 1.38701 * 120.07312 * 34.59526 * 13 12 10 15 15 C 1.38198 * 120.02034 * 180.02562 * 14 13 12 16 16 C 1.38555 * 120.17259 * 0.02562 * 15 14 13 17 17 F 1.35098 * 119.91759 * 179.97438 * 16 15 14 18 18 C 1.38347 * 120.15252 * 359.72186 * 16 15 14 19 19 C 1.38737 * 119.97204 * 0.55483 * 18 16 15 20 20 O 1.35782 * 120.08136 * 179.72120 * 19 18 16 21 21 C 1.34803 * 117.00410 * 5.43429 * 20 19 18 22 22 H 1.07998 * 119.99302 * 354.95029 * 21 20 19 23 23 C 1.38638 * 120.00109 * 174.95576 * 21 20 19 24 24 N 1.31573 * 119.99899 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99605 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46997 * 269.99346 * 25 23 21 27 27 H 1.48507 * 109.46961 * 149.99981 * 25 23 21 28 28 H 1.48502 * 109.47281 * 29.99851 * 25 23 21 29 29 H 1.08997 * 109.47693 * 298.58134 * 1 2 3 30 30 H 1.09001 * 109.47129 * 58.58677 * 1 2 3 31 31 H 1.09003 * 109.47053 * 178.58392 * 1 2 3 32 32 H 1.08998 * 110.11066 * 121.54004 * 4 2 1 33 33 H 1.08997 * 109.93152 * 0.11834 * 4 2 1 34 34 H 1.09000 * 110.48443 * 217.60095 * 5 4 2 35 35 H 1.09007 * 110.59582 * 95.02137 * 5 4 2 36 36 H 1.09005 * 110.75182 * 279.62524 * 6 5 4 37 37 H 1.09001 * 110.75110 * 156.25959 * 6 5 4 38 38 H 0.96996 * 120.00145 * 336.83857 * 9 7 2 39 39 H 0.97001 * 120.00312 * 355.62384 * 12 10 9 40 40 H 1.07994 * 119.98561 * 0.02562 * 14 13 12 41 41 H 1.07992 * 119.91165 * 179.97438 * 15 14 13 42 42 H 1.07993 * 120.00956 * 180.27769 * 18 16 15 43 43 H 0.96994 * 120.00137 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0610 -0.7550 -1.2337 5 6 2.8885 -1.9432 -0.7014 6 6 3.3132 -1.5032 0.7217 7 6 2.0584 -0.7554 1.2369 8 1 1.3133 -1.4643 1.5980 9 7 2.4229 0.1879 2.2968 10 6 2.4567 -0.2210 3.5806 11 8 2.1850 -1.3730 3.8590 12 7 2.7925 0.6467 4.5556 13 6 2.7390 0.2475 5.8978 14 6 3.0539 -1.0571 6.2480 15 6 3.0003 -1.4497 7.5720 16 6 2.6319 -0.5431 8.5528 17 9 2.5807 -0.9327 9.8454 18 6 2.3214 0.7613 8.2122 19 6 2.3676 1.1606 6.8843 20 8 2.0578 2.4388 6.5469 21 6 1.8232 3.2991 7.5579 22 1 1.8053 2.9424 8.5771 23 6 1.6048 4.6415 7.2892 24 7 1.6271 5.0760 6.0475 25 14 1.2790 5.8333 8.6902 26 1 -0.1812 5.9037 8.9507 27 1 1.7813 7.1811 8.3204 28 1 1.9781 5.3629 9.9130 29 1 -0.3634 0.4916 0.9024 30 1 -0.3633 0.5356 -0.8770 31 1 -0.3633 -1.0274 -0.0254 32 1 2.6928 -0.0983 -1.8318 33 1 1.2272 -1.1197 -1.8336 34 1 3.7654 -2.1082 -1.3273 35 1 2.2784 -2.8454 -0.6557 36 1 4.1718 -0.8331 0.6786 37 1 3.5295 -2.3704 1.3456 38 1 2.6401 1.1068 2.0747 39 1 3.0713 1.5476 4.3283 40 1 3.3410 -1.7662 5.4858 41 1 3.2454 -2.4661 7.8426 42 1 2.0389 1.4672 8.9791 43 1 1.7959 4.4571 5.3200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135252976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:09 Heat of formation + Delta-G solvation = -94.267315 kcal Electronic energy + Delta-G solvation = -27090.118425 eV Core-core repulsion = 23049.768699 eV Total energy + Delta-G solvation = -4040.349725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.28495 -40.43929 -39.24461 -38.18957 -36.44776 -34.09736 -33.61036 -32.41045 -31.41434 -29.48543 -28.66049 -27.22585 -25.14942 -25.04402 -22.55956 -21.84789 -20.93142 -20.55296 -20.01972 -18.72906 -18.22600 -17.53138 -16.97587 -16.06374 -15.73490 -15.25870 -15.08412 -14.97092 -14.91076 -14.29670 -14.00066 -13.97516 -13.89732 -13.78110 -13.63838 -13.43531 -13.06048 -12.50538 -12.42659 -12.28553 -12.11326 -11.49953 -11.28535 -11.24662 -10.94320 -10.92636 -10.82920 -10.80452 -10.75460 -10.64305 -10.38342 -9.90755 -9.81927 -9.46487 -8.96305 -8.89884 -7.92282 -7.17287 -6.92110 -4.21352 1.80248 2.07481 2.84987 3.18259 3.23230 3.36940 3.40267 3.98263 4.25912 4.31205 4.40273 4.47023 4.64709 4.75840 4.99632 5.05062 5.05538 5.16948 5.26824 5.30984 5.33060 5.43134 5.53798 5.62508 5.70089 5.72073 5.76523 5.87421 5.95334 5.98468 6.04827 6.08378 6.14754 6.16128 6.48969 6.63061 6.68458 6.85317 6.89514 7.05069 7.19163 7.40264 7.59423 8.19703 8.23120 8.72919 8.81434 9.37611 10.51180 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.003636 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.692062 B = 7699.480881 C = 9755.608049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.137 4.137 7 C 0.164 3.836 8 H 0.095 0.905 9 N -0.739 5.739 10 C 0.704 3.296 11 O -0.584 6.584 12 N -0.667 5.667 13 C 0.076 3.924 14 C -0.050 4.050 15 C -0.227 4.227 16 C 0.128 3.872 17 F -0.151 7.151 18 C -0.254 4.254 19 C 0.160 3.840 20 O -0.193 6.193 21 C -0.471 4.471 22 H 0.087 0.913 23 C 0.015 3.985 24 N -0.877 5.877 25 Si 1.097 2.903 26 H -0.280 1.280 27 H -0.275 1.275 28 H -0.281 1.281 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.396 0.604 39 H 0.407 0.593 40 H 0.144 0.856 41 H 0.123 0.877 42 H 0.144 0.856 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -8.557 -11.648 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.096 0.904 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.176 4.176 7 C 0.059 3.941 8 H 0.113 0.887 9 N -0.394 5.394 10 C 0.405 3.595 11 O -0.462 6.462 12 N -0.314 5.314 13 C -0.019 4.019 14 C -0.070 4.070 15 C -0.247 4.247 16 C 0.108 3.892 17 F -0.129 7.129 18 C -0.275 4.275 19 C 0.104 3.896 20 O -0.097 6.097 21 C -0.547 4.547 22 H 0.104 0.896 23 C -0.191 4.191 24 N -0.508 5.508 25 Si 0.921 3.079 26 H -0.206 1.206 27 H -0.200 1.200 28 H -0.206 1.206 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.230 0.770 39 H 0.243 0.757 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.161 0.839 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.740 -7.828 -11.283 13.842 hybrid contribution 0.466 -0.794 -0.141 0.931 sum 2.206 -8.621 -11.424 14.481 Atomic orbital electron populations 1.21879 0.94318 1.02040 1.02031 1.22039 0.96401 0.99747 0.94096 0.90443 1.22213 0.99562 0.97028 0.96759 1.22297 0.99653 0.98052 0.96116 1.22925 0.98013 1.00644 0.96000 1.21770 0.96480 0.90536 0.85363 0.88688 1.45160 1.75040 1.14272 1.04909 1.15906 0.78027 0.84957 0.80582 1.90869 1.56230 1.17223 1.81873 1.42193 1.69543 1.16055 1.03578 1.16659 1.10138 0.93903 0.81186 1.20679 0.96796 0.94144 0.95396 1.20512 1.12339 0.99640 0.92193 1.17459 1.00941 0.93105 0.77687 1.91413 1.94251 1.91584 1.35699 1.20857 1.13706 0.95790 0.97173 1.18663 0.93610 0.86159 0.91118 1.83619 1.75318 1.14739 1.36036 1.22279 1.54329 0.90272 0.87786 0.89585 1.26555 0.95080 0.94645 1.02841 1.70589 1.41714 1.39050 0.99464 0.83064 0.77285 0.75174 0.72371 1.20594 1.19964 1.20646 0.92298 0.92504 0.92411 0.91639 0.91423 0.91556 0.91427 0.91234 0.90932 0.76953 0.75733 0.83875 0.85857 0.83875 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.85 37.16 0.33 -1.00 16 2 C -0.10 -0.94 3.24 -89.39 -0.29 -1.23 16 3 H 0.08 0.67 7.72 -51.93 -0.40 0.27 16 4 C -0.12 -0.89 6.47 -25.50 -0.16 -1.06 16 5 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 6 C -0.14 -1.40 6.58 -24.74 -0.16 -1.56 16 7 C 0.16 1.87 2.71 -66.27 -0.18 1.69 16 8 H 0.10 1.28 7.32 -51.93 -0.38 0.90 16 9 N -0.74 -9.57 5.17 -57.06 -0.30 -9.86 16 10 C 0.70 12.06 8.41 -86.92 -0.73 11.33 16 11 O -0.58 -11.57 13.43 5.28 0.07 -11.50 16 12 N -0.67 -12.09 5.20 -14.07 -0.07 -12.16 16 13 C 0.08 1.58 6.33 -83.43 -0.53 1.05 16 14 C -0.05 -0.96 8.69 -39.43 -0.34 -1.31 16 15 C -0.23 -4.26 10.02 -39.48 -0.40 -4.66 16 16 C 0.13 2.60 7.29 -39.42 -0.29 2.31 16 17 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 18 C -0.25 -5.66 9.14 -39.36 -0.36 -6.02 16 19 C 0.16 3.71 6.66 -38.94 -0.26 3.45 16 20 O -0.19 -4.99 8.72 0.03 0.00 -4.99 16 21 C -0.47 -12.54 9.49 30.88 0.29 -12.25 16 22 H 0.09 2.20 5.20 -52.49 -0.27 1.93 16 23 C 0.01 0.38 5.49 -17.51 -0.10 0.29 16 24 N -0.88 -24.40 13.70 55.48 0.76 -23.64 16 25 Si 1.10 22.79 29.92 -169.99 -5.09 17.70 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.47 7.68 -51.93 -0.40 0.07 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 4.32 8.36 -40.82 -0.34 3.97 16 39 H 0.41 6.88 8.58 -40.82 -0.35 6.53 16 40 H 0.14 2.71 6.19 -52.49 -0.32 2.38 16 41 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 42 H 0.14 3.22 5.64 -52.49 -0.30 2.92 16 43 H 0.28 7.82 7.97 -40.82 -0.33 7.50 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -30.10 358.78 -8.21 -38.31 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -5.69 Total: 13.73 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -3.35 Total: -10.12 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.39 Total: -45.67 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.07 Total: -16.49 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.09 Total: 17.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.10 -8.21 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135252976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.955 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds