Wall clock time and date at job start Tue Mar 31 2020 14:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.52500 * 2 1 4 4 C 1.53041 * 109.49697 * 120.07767 * 2 1 3 5 5 C 1.53032 * 109.54103 * 181.31476 * 4 2 1 6 6 C 1.53628 * 109.24455 * 298.51611 * 5 4 2 7 7 N 1.46923 * 108.54131 * 54.85095 * 6 5 4 8 8 C 1.34777 * 120.62946 * 126.37303 * 7 6 5 9 9 O 1.21587 * 120.00243 * 183.93150 * 8 7 6 10 10 N 1.34782 * 119.99702 * 3.93162 * 8 7 6 11 11 C 1.40142 * 119.99617 * 178.19714 * 10 8 7 12 12 C 1.38693 * 120.07303 * 21.16658 * 11 10 8 13 13 C 1.38198 * 120.01890 * 179.97438 * 12 11 10 14 14 C 1.38541 * 120.17442 * 0.02562 * 13 12 11 15 15 F 1.35105 * 119.92601 * 179.97438 * 14 13 12 16 16 C 1.38350 * 120.15339 * 359.71934 * 14 13 12 17 17 C 1.38736 * 119.97124 * 0.53084 * 16 14 13 18 18 O 1.35779 * 120.08441 * 179.74135 * 17 16 14 19 19 C 1.34806 * 116.99814 * 5.71728 * 18 17 16 20 20 H 1.07990 * 120.00130 * 354.84151 * 19 18 17 21 21 C 1.38638 * 119.99566 * 174.84471 * 19 18 17 22 22 N 1.31579 * 119.99818 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00300 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46788 * 270.00340 * 23 21 19 25 25 H 1.48491 * 109.47069 * 30.00211 * 23 21 19 26 26 H 1.48500 * 109.46980 * 150.00333 * 23 21 19 27 27 C 1.46925 * 118.74032 * 306.09511 * 7 6 5 28 28 H 1.08996 * 109.47095 * 180.08553 * 1 2 3 29 29 H 1.09001 * 109.46817 * 300.08347 * 1 2 3 30 30 H 1.09005 * 109.46931 * 60.08220 * 1 2 3 31 31 H 1.09003 * 109.46222 * 301.34043 * 4 2 1 32 32 H 1.09007 * 109.45761 * 61.29395 * 4 2 1 33 33 H 1.09003 * 109.49732 * 58.58601 * 5 4 2 34 34 H 1.08998 * 109.50256 * 178.68451 * 5 4 2 35 35 H 1.08998 * 109.73167 * 295.11602 * 6 5 4 36 36 H 1.08999 * 109.66470 * 174.54860 * 6 5 4 37 37 H 0.96994 * 119.99800 * 358.20866 * 10 8 7 38 38 H 1.08002 * 119.98948 * 359.97004 * 12 11 10 39 39 H 1.08002 * 119.91331 * 179.97438 * 13 12 11 40 40 H 1.07992 * 120.01388 * 180.30328 * 16 14 13 41 41 H 0.96996 * 120.00285 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.58452 * 173.65237 * 27 7 6 43 43 H 1.08997 * 109.58624 * 293.93027 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5708 -0.6950 1.2661 6 6 4.1051 -1.4318 0.0284 7 7 3.5046 -0.8292 -1.1694 8 6 4.2812 -0.3865 -2.1782 9 8 3.7775 0.1747 -3.1319 10 7 5.6161 -0.5660 -2.1296 11 6 6.4196 -0.1396 -3.1957 12 6 5.9537 0.8280 -4.0735 13 6 6.7472 1.2480 -5.1241 14 6 8.0088 0.7047 -5.3045 15 9 8.7801 1.1187 -6.3336 16 6 8.4828 -0.2570 -4.4301 17 6 7.6894 -0.6871 -3.3764 18 8 8.1502 -1.6346 -2.5200 19 6 9.4291 -2.0312 -2.6767 20 1 10.0115 -1.6604 -3.5070 21 6 9.9964 -2.9152 -1.7719 22 7 11.2448 -3.3020 -1.9245 23 14 8.9891 -3.5563 -0.3353 24 1 9.1529 -2.6482 0.8283 25 1 7.5563 -3.6125 -0.7214 26 1 9.4573 -4.9175 0.0292 27 6 2.0414 -0.7239 -1.2495 28 1 -0.3633 -1.0276 0.0015 29 1 -0.3633 0.5151 0.8893 30 1 -0.3633 0.5126 -0.8908 31 1 1.6582 -0.2244 2.1390 32 1 1.6967 -1.7573 1.2354 33 1 3.9159 0.3388 1.2541 34 1 3.9334 -1.1897 2.1672 35 1 3.8338 -2.4861 0.0822 36 1 5.1896 -1.3333 -0.0173 37 1 6.0206 -0.9904 -1.3569 38 1 4.9705 1.2532 -3.9359 39 1 6.3825 2.0013 -5.8068 40 1 9.4684 -0.6755 -4.5700 41 1 11.6419 -3.9202 -1.2913 42 1 1.7639 -0.1581 -2.1389 43 1 1.6055 -1.7216 -1.3005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135260099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:51 Heat of formation + Delta-G solvation = -68.269275 kcal Electronic energy + Delta-G solvation = -27620.852372 eV Core-core repulsion = 23581.630006 eV Total energy + Delta-G solvation = -4039.222366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.23945 -40.78279 -39.28957 -37.95249 -36.38189 -34.58798 -33.59176 -32.50245 -31.99383 -29.55206 -28.62704 -26.88723 -25.57639 -25.27167 -22.54045 -22.49476 -21.64395 -20.58461 -19.50620 -18.61254 -18.19218 -17.53513 -16.88781 -15.64750 -15.54933 -15.38385 -15.28659 -14.98359 -14.81218 -14.68068 -14.17718 -14.05070 -13.96500 -13.62837 -13.47790 -13.29121 -13.24594 -12.87728 -12.52630 -12.37170 -12.16798 -12.05612 -11.83852 -11.50683 -11.36087 -11.07836 -11.00406 -10.91398 -10.81722 -10.60951 -10.49096 -9.94919 -9.73192 -9.43781 -9.00827 -8.72231 -7.93024 -7.14996 -6.54329 -4.21459 1.79775 2.04886 2.63208 3.07418 3.10832 3.20145 3.26361 3.89198 4.07326 4.30623 4.44663 4.53424 4.55577 4.58540 4.75155 4.94276 5.00623 5.02693 5.16959 5.21528 5.33373 5.43053 5.47750 5.51232 5.56775 5.63716 5.70082 5.72845 5.83061 5.86008 5.90757 5.94752 6.07682 6.13870 6.35673 6.56774 6.64239 6.84256 6.91887 7.00882 7.09873 7.49025 7.66826 7.88152 8.03019 8.65647 8.78838 9.34217 10.53162 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.004677 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.051519 B = 5984.723250 C = 8408.787953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.106 3.894 7 N -0.628 5.628 8 C 0.708 3.292 9 O -0.579 6.579 10 N -0.665 5.665 11 C 0.082 3.918 12 C -0.074 4.074 13 C -0.216 4.216 14 C 0.121 3.879 15 F -0.150 7.150 16 C -0.242 4.242 17 C 0.158 3.842 18 O -0.214 6.214 19 C -0.390 4.390 20 H 0.109 0.891 21 C 0.066 3.934 22 N -0.873 5.873 23 Si 0.902 3.098 24 H -0.271 1.271 25 H -0.260 1.260 26 H -0.280 1.280 27 C 0.135 3.865 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.408 0.592 38 H 0.165 0.835 39 H 0.124 0.876 40 H 0.149 0.851 41 H 0.281 0.719 42 H 0.095 0.905 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.483 4.425 6.995 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.173 4.173 6 C -0.018 4.018 7 N -0.366 5.366 8 C 0.411 3.589 9 O -0.458 6.458 10 N -0.313 5.313 11 C -0.013 4.013 12 C -0.094 4.094 13 C -0.236 4.236 14 C 0.101 3.899 15 F -0.129 7.129 16 C -0.262 4.262 17 C 0.104 3.896 18 O -0.119 6.119 19 C -0.465 4.465 20 H 0.126 0.874 21 C -0.139 4.139 22 N -0.510 5.510 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.184 1.184 26 H -0.205 1.205 27 C 0.012 3.988 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.246 0.754 38 H 0.182 0.818 39 H 0.142 0.858 40 H 0.166 0.834 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.741 4.532 6.585 19.458 hybrid contribution 0.427 -0.648 0.825 1.132 sum -17.313 3.884 7.410 19.228 Atomic orbital electron populations 1.21756 0.94404 1.02007 1.02043 1.21535 0.95839 1.00328 0.95068 0.90659 1.21579 0.95083 1.00842 0.97606 1.21999 0.96244 1.01547 0.97557 1.21794 0.98026 0.97396 0.84565 1.47244 1.06578 1.64687 1.18047 1.15766 0.80994 0.79551 0.82632 1.90743 1.73169 1.48097 1.33806 1.42457 1.04733 1.62698 1.21363 1.16816 0.90166 1.00487 0.93846 1.21281 1.00934 0.94269 0.92929 1.20625 0.94034 1.06140 1.02816 1.17499 0.89581 0.96585 0.86213 1.91422 1.75123 1.89308 1.57020 1.20935 1.03569 1.03566 0.98180 1.18401 0.91541 0.89132 0.90527 1.83490 1.30581 1.47737 1.50059 1.20755 0.84140 1.27619 1.14018 0.87375 1.24459 0.95389 0.95858 0.98145 1.69644 1.11773 1.32354 1.37254 0.86242 0.81013 0.78446 0.81555 1.19680 1.18447 1.20532 1.21523 0.77828 1.00528 0.98960 0.92503 0.92411 0.92299 0.91679 0.91698 0.91239 0.90518 0.90947 0.90256 0.75392 0.81806 0.85782 0.83364 0.90852 0.88667 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.11 -0.92 2.87 -90.50 -0.26 -1.18 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -0.86 5.16 -26.69 -0.14 -1.00 16 5 C -0.14 -1.16 6.10 -26.39 -0.16 -1.32 16 6 C 0.11 1.14 6.42 -3.49 -0.02 1.12 16 7 N -0.63 -8.15 2.97 -178.23 -0.53 -8.68 16 8 C 0.71 11.83 8.20 -86.91 -0.71 11.12 16 9 O -0.58 -10.90 12.53 5.29 0.07 -10.83 16 10 N -0.67 -11.83 5.23 -14.07 -0.07 -11.90 16 11 C 0.08 1.65 6.53 -83.44 -0.54 1.10 16 12 C -0.07 -1.40 8.83 -39.43 -0.35 -1.75 16 13 C -0.22 -3.97 10.02 -39.48 -0.40 -4.37 16 14 C 0.12 2.43 7.29 -39.43 -0.29 2.14 16 15 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 16 C -0.24 -5.30 9.14 -39.36 -0.36 -5.66 16 17 C 0.16 3.53 6.66 -38.94 -0.26 3.27 16 18 O -0.21 -5.18 7.96 0.03 0.00 -5.18 16 19 C -0.39 -10.40 9.95 30.88 0.31 -10.10 16 20 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 21 C 0.07 1.74 5.49 -17.51 -0.10 1.64 16 22 N -0.87 -24.21 13.96 55.48 0.77 -23.44 16 23 Si 0.90 19.80 28.62 -169.99 -4.86 14.93 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 C 0.13 1.44 5.72 -3.71 -0.02 1.42 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.92 5.64 -51.93 -0.29 0.63 16 37 H 0.41 6.85 5.76 -40.82 -0.24 6.61 16 38 H 0.17 3.07 5.27 -52.53 -0.28 2.80 16 39 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 40 H 0.15 3.39 5.64 -52.49 -0.30 3.10 16 41 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.09 1.16 6.99 -51.93 -0.36 0.79 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -29.13 349.95 -7.80 -36.94 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.53 Total: 9.96 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.96 Total: -4.19 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.17 Total: -44.02 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.07 Total: -16.02 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.86 Total: 14.93 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.13 -7.80 -36.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135260099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.330 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds