Wall clock time and date at job start Tue Mar 31 2020 14:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.41532 * 2 1 4 4 C 1.55128 * 110.49799 * 237.64565 * 2 1 3 5 5 C 1.55155 * 101.48803 * 278.45575 * 4 2 1 6 6 C 1.54322 * 102.94147 * 324.33171 * 5 4 2 7 7 H 1.08999 * 109.88657 * 262.77531 * 6 5 4 8 8 C 1.53005 * 109.88633 * 141.60956 * 6 5 4 9 9 N 1.47026 * 107.27346 * 22.19305 * 6 5 4 10 10 C 1.34774 * 125.65178 * 181.02139 * 9 6 5 11 11 O 1.21596 * 119.99995 * 0.02562 * 10 9 6 12 12 N 1.34776 * 119.99938 * 179.97438 * 10 9 6 13 13 C 1.40135 * 119.99890 * 183.92821 * 12 10 9 14 14 C 1.38694 * 120.07666 * 334.48327 * 13 12 10 15 15 C 1.38197 * 120.02360 * 179.97438 * 14 13 12 16 16 C 1.38547 * 120.17345 * 0.02562 * 15 14 13 17 17 F 1.35095 * 119.92549 * 179.97438 * 16 15 14 18 18 C 1.38349 * 120.15236 * 359.95340 * 16 15 14 19 19 C 1.38743 * 119.97443 * 0.07231 * 18 16 15 20 20 O 1.35778 * 120.08400 * 180.23491 * 19 18 16 21 21 C 1.34806 * 117.00063 * 354.36454 * 20 19 18 22 22 H 1.07993 * 119.99959 * 354.63464 * 21 20 19 23 23 C 1.38641 * 119.99705 * 174.63089 * 21 20 19 24 24 N 1.31572 * 119.99753 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00162 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47166 * 89.99882 * 25 23 21 27 27 H 1.48497 * 109.47117 * 209.99991 * 25 23 21 28 28 H 1.48504 * 109.47024 * 330.00016 * 25 23 21 29 29 H 1.09003 * 109.47110 * 297.70085 * 1 2 3 30 30 H 1.08997 * 109.47227 * 57.70528 * 1 2 3 31 31 H 1.09001 * 109.47140 * 177.70757 * 1 2 3 32 32 H 1.08997 * 111.19199 * 160.34799 * 4 2 1 33 33 H 1.09004 * 110.93784 * 36.44695 * 4 2 1 34 34 H 1.08998 * 110.72345 * 205.96912 * 5 4 2 35 35 H 1.09005 * 110.87506 * 82.76017 * 5 4 2 36 36 H 1.09003 * 109.46937 * 302.19278 * 8 6 5 37 37 H 1.09004 * 109.46839 * 62.18694 * 8 6 5 38 38 H 1.08996 * 109.47408 * 182.18980 * 8 6 5 39 39 H 0.97001 * 120.00062 * 3.93945 * 12 10 9 40 40 H 1.07999 * 119.98899 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.91560 * 179.97438 * 15 14 13 42 42 H 1.07995 * 120.01593 * 180.02562 * 18 16 15 43 43 H 0.96999 * 119.99584 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0732 -0.7776 -1.2275 5 6 1.9720 -2.2449 -0.7333 6 6 2.3092 -2.1279 0.7681 7 1 3.3602 -2.3660 0.9317 8 6 1.4252 -3.0804 1.5758 9 7 2.0431 -0.7384 1.1684 10 6 2.2314 -0.2261 2.4006 11 8 2.6570 -0.9325 3.2942 12 7 1.9491 1.0694 2.6421 13 6 2.2220 1.6232 3.9002 14 6 2.2682 0.8098 5.0225 15 6 2.5379 1.3570 6.2625 16 6 2.7623 2.7183 6.3890 17 9 3.0250 3.2480 7.6037 18 6 2.7184 3.5364 5.2742 19 6 2.4476 2.9937 4.0264 20 8 2.4087 3.7938 2.9301 21 6 2.5255 5.1208 3.1365 22 1 2.5566 5.5100 4.1433 23 6 2.6059 5.9859 2.0560 24 7 2.7195 7.2811 2.2574 25 14 2.5516 5.3127 0.3144 26 1 1.1426 5.2584 -0.1515 27 1 3.3360 6.1982 -0.5832 28 1 3.1329 3.9463 0.2935 29 1 -0.3633 0.4777 0.9099 30 1 -0.3633 0.5490 -0.8687 31 1 -0.3633 -1.0268 -0.0411 32 1 3.1077 -0.5071 -1.4390 33 1 1.4426 -0.6154 -2.1016 34 1 2.7001 -2.8750 -1.2441 35 1 0.9630 -2.6330 -0.8728 36 1 0.3765 -2.8474 1.3909 37 1 1.6277 -4.1080 1.2739 38 1 1.6414 -2.9643 2.6377 39 1 1.5569 1.6184 1.9453 40 1 2.0934 -0.2517 4.9274 41 1 2.5731 0.7220 7.1354 42 1 2.8940 4.5972 5.3753 43 1 2.7761 7.8863 1.5015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135273421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:20 Heat of formation + Delta-G solvation = -66.959532 kcal Electronic energy + Delta-G solvation = -28023.341957 eV Core-core repulsion = 23984.176386 eV Total energy + Delta-G solvation = -4039.165571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.24319 -40.79581 -39.39678 -37.99408 -36.34437 -34.37110 -32.52379 -32.30249 -31.75260 -29.52852 -28.71532 -28.11642 -25.42139 -24.48882 -23.34225 -22.07817 -21.47774 -20.80878 -19.39291 -18.48054 -18.16195 -17.56704 -16.71495 -16.10862 -15.56205 -15.31399 -15.05341 -14.84688 -14.70743 -14.13674 -14.03413 -13.95834 -13.84041 -13.49907 -13.45510 -13.28302 -12.85562 -12.65801 -12.54114 -12.44535 -12.32938 -11.99468 -11.86754 -11.72207 -11.44123 -11.05728 -10.96702 -10.92286 -10.79522 -10.74311 -10.47893 -9.88583 -9.74832 -9.45143 -9.00322 -8.71843 -7.92856 -7.15723 -6.54150 -4.21120 1.79951 2.05234 2.63158 3.08566 3.11584 3.21995 3.31771 3.94974 4.08190 4.26921 4.30561 4.42609 4.56056 4.67661 4.88119 4.95069 5.02278 5.05300 5.10599 5.28138 5.37038 5.44098 5.49528 5.53452 5.55479 5.71991 5.72787 5.74427 5.80345 5.92730 5.98126 6.05193 6.08522 6.19386 6.36107 6.53763 6.70409 6.85061 6.91894 7.04169 7.21689 7.48714 7.66787 7.88293 8.09509 8.72297 8.79223 9.34907 10.53282 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.005444 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.540239 B = 5142.120389 C = 7622.227992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 H 0.084 0.916 4 C -0.126 4.126 5 C -0.127 4.127 6 C 0.154 3.846 7 H 0.074 0.926 8 C -0.163 4.163 9 N -0.628 5.628 10 C 0.724 3.276 11 O -0.577 6.577 12 N -0.665 5.665 13 C 0.082 3.918 14 C -0.066 4.066 15 C -0.217 4.217 16 C 0.123 3.877 17 F -0.150 7.150 18 C -0.243 4.243 19 C 0.159 3.841 20 O -0.212 6.212 21 C -0.390 4.390 22 H 0.109 0.891 23 C 0.066 3.934 24 N -0.873 5.873 25 Si 0.902 3.098 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.260 1.260 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.407 0.593 40 H 0.159 0.841 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -16.725 -7.306 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.102 0.898 4 C -0.164 4.164 5 C -0.165 4.165 6 C 0.050 3.950 7 H 0.092 0.908 8 C -0.221 4.221 9 N -0.366 5.366 10 C 0.427 3.573 11 O -0.456 6.456 12 N -0.311 5.311 13 C -0.013 4.013 14 C -0.087 4.087 15 C -0.238 4.238 16 C 0.103 3.897 17 F -0.129 7.129 18 C -0.263 4.263 19 C 0.105 3.895 20 O -0.117 6.117 21 C -0.465 4.465 22 H 0.126 0.874 23 C -0.138 4.138 24 N -0.510 5.510 25 Si 0.727 3.273 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.184 1.184 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.243 0.757 40 H 0.176 0.824 41 H 0.142 0.858 42 H 0.166 0.834 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.571 -17.007 -6.932 18.710 hybrid contribution -0.092 0.612 -0.814 1.023 sum -3.663 -16.395 -7.746 18.499 Atomic orbital electron populations 1.22200 0.94670 1.02609 1.02720 1.21983 0.94393 0.96758 0.85570 0.89822 1.22801 1.02122 0.94710 0.96774 1.22737 1.02651 0.97072 0.94069 1.21358 0.99577 0.80571 0.93476 0.90751 1.22181 0.99387 0.98335 1.02204 1.47753 1.69114 1.11632 1.08079 1.15354 0.78595 0.81806 0.81563 1.90792 1.52712 1.59450 1.42612 1.42277 1.64851 1.09884 1.14043 1.16761 1.10797 0.89114 0.84617 1.21079 0.97674 1.00941 0.89006 1.20603 1.11882 0.92848 0.98427 1.17487 1.00882 0.91708 0.79648 1.91420 1.91671 1.87197 1.42567 1.20945 1.12686 1.01836 0.90863 1.18436 0.95400 0.88516 0.87153 1.83513 1.80346 1.19342 1.28505 1.20753 1.52128 0.76630 0.96983 0.87417 1.24458 0.95551 0.94325 0.99498 1.69645 1.46747 1.01627 1.32960 0.86238 0.78793 0.79787 0.82441 1.19660 1.20604 1.18418 0.92072 0.91239 0.91932 0.90350 0.89719 0.90075 0.90383 0.92710 0.92032 0.90830 0.75681 0.82408 0.85791 0.83366 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.52 37.16 0.35 -1.21 16 2 C 0.12 1.28 2.99 -66.30 -0.20 1.08 16 3 H 0.08 1.03 7.35 -51.93 -0.38 0.65 16 4 C -0.13 -1.03 6.58 -24.46 -0.16 -1.20 16 5 C -0.13 -0.96 6.09 -24.90 -0.15 -1.11 16 6 C 0.15 1.66 3.46 -66.95 -0.23 1.43 16 7 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 8 C -0.16 -1.68 9.13 37.16 0.34 -1.35 16 9 N -0.63 -8.31 2.71 -161.09 -0.44 -8.75 16 10 C 0.72 12.28 8.17 -86.92 -0.71 11.57 16 11 O -0.58 -10.99 12.28 5.28 0.06 -10.93 16 12 N -0.66 -11.93 5.24 -14.07 -0.07 -12.00 16 13 C 0.08 1.66 6.48 -83.44 -0.54 1.12 16 14 C -0.07 -1.26 8.79 -39.43 -0.35 -1.61 16 15 C -0.22 -4.01 10.02 -39.48 -0.40 -4.40 16 16 C 0.12 2.46 7.29 -39.43 -0.29 2.18 16 17 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 18 C -0.24 -5.33 9.11 -39.35 -0.36 -5.69 16 19 C 0.16 3.57 6.66 -38.94 -0.26 3.31 16 20 O -0.21 -5.17 8.01 0.03 0.00 -5.17 16 21 C -0.39 -10.42 9.90 30.88 0.31 -10.11 16 22 H 0.11 3.00 5.52 -52.49 -0.29 2.71 16 23 C 0.07 1.75 5.49 -17.51 -0.10 1.66 16 24 N -0.87 -24.25 13.96 55.48 0.77 -23.47 16 25 Si 0.90 20.01 28.62 -169.99 -4.86 15.15 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.54 7.37 -51.93 -0.38 0.16 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.52 7.40 -51.93 -0.38 0.13 16 36 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.96 6.84 -51.93 -0.36 0.61 16 39 H 0.41 6.94 6.88 -40.82 -0.28 6.66 16 40 H 0.16 2.95 5.52 -52.49 -0.29 2.66 16 41 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 42 H 0.15 3.41 5.71 -52.49 -0.30 3.11 16 43 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -29.36 353.06 -7.51 -36.87 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.60 Total: 10.21 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.74 Total: -4.34 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.26 Total: -44.22 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.07 Total: -16.10 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.86 Total: 15.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.36 -7.51 -36.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135273421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.090 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds