Wall clock time and date at job start Tue Mar 31 2020 14:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.41532 * 2 1 4 4 C 1.55128 * 110.49799 * 237.64565 * 2 1 3 5 5 C 1.55155 * 101.48803 * 278.45575 * 4 2 1 6 6 C 1.54322 * 102.94147 * 324.33171 * 5 4 2 7 7 H 1.08999 * 109.88657 * 262.77531 * 6 5 4 8 8 C 1.53005 * 109.88633 * 141.60956 * 6 5 4 9 9 N 1.47026 * 107.27346 * 22.19305 * 6 5 4 10 10 C 1.34774 * 125.65178 * 181.02139 * 9 6 5 11 11 O 1.21596 * 119.99995 * 0.02562 * 10 9 6 12 12 N 1.34776 * 119.99938 * 179.97438 * 10 9 6 13 13 C 1.40135 * 119.99890 * 183.92821 * 12 10 9 14 14 C 1.38694 * 120.07666 * 334.48327 * 13 12 10 15 15 C 1.38197 * 120.02360 * 179.97438 * 14 13 12 16 16 C 1.38547 * 120.17345 * 0.02562 * 15 14 13 17 17 F 1.35095 * 119.92549 * 179.97438 * 16 15 14 18 18 C 1.38349 * 120.15236 * 359.95340 * 16 15 14 19 19 C 1.38743 * 119.97443 * 0.07231 * 18 16 15 20 20 O 1.35778 * 120.08400 * 180.23491 * 19 18 16 21 21 C 1.34806 * 117.00063 * 354.36454 * 20 19 18 22 22 H 1.07993 * 119.99959 * 354.63464 * 21 20 19 23 23 C 1.38641 * 119.99705 * 174.63089 * 21 20 19 24 24 N 1.31572 * 119.99753 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00162 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47166 * 89.99882 * 25 23 21 27 27 H 1.48497 * 109.47117 * 209.99991 * 25 23 21 28 28 H 1.48504 * 109.47024 * 330.00016 * 25 23 21 29 29 H 1.09003 * 109.47110 * 297.70085 * 1 2 3 30 30 H 1.08997 * 109.47227 * 57.70528 * 1 2 3 31 31 H 1.09001 * 109.47140 * 177.70757 * 1 2 3 32 32 H 1.08997 * 111.19199 * 160.34799 * 4 2 1 33 33 H 1.09004 * 110.93784 * 36.44695 * 4 2 1 34 34 H 1.08998 * 110.72345 * 205.96912 * 5 4 2 35 35 H 1.09005 * 110.87506 * 82.76017 * 5 4 2 36 36 H 1.09003 * 109.46937 * 302.19278 * 8 6 5 37 37 H 1.09004 * 109.46839 * 62.18694 * 8 6 5 38 38 H 1.08996 * 109.47408 * 182.18980 * 8 6 5 39 39 H 0.97001 * 120.00062 * 3.93945 * 12 10 9 40 40 H 1.07999 * 119.98899 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.91560 * 179.97438 * 15 14 13 42 42 H 1.07995 * 120.01593 * 180.02562 * 18 16 15 43 43 H 0.96999 * 119.99584 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0732 -0.7776 -1.2275 5 6 1.9720 -2.2449 -0.7333 6 6 2.3092 -2.1279 0.7681 7 1 3.3602 -2.3660 0.9317 8 6 1.4252 -3.0804 1.5758 9 7 2.0431 -0.7384 1.1684 10 6 2.2314 -0.2261 2.4006 11 8 2.6570 -0.9325 3.2942 12 7 1.9491 1.0694 2.6421 13 6 2.2220 1.6232 3.9002 14 6 2.2682 0.8098 5.0225 15 6 2.5379 1.3570 6.2625 16 6 2.7623 2.7183 6.3890 17 9 3.0250 3.2480 7.6037 18 6 2.7184 3.5364 5.2742 19 6 2.4476 2.9937 4.0264 20 8 2.4087 3.7938 2.9301 21 6 2.5255 5.1208 3.1365 22 1 2.5566 5.5100 4.1433 23 6 2.6059 5.9859 2.0560 24 7 2.7195 7.2811 2.2574 25 14 2.5516 5.3127 0.3144 26 1 1.1426 5.2584 -0.1515 27 1 3.3360 6.1982 -0.5832 28 1 3.1329 3.9463 0.2935 29 1 -0.3633 0.4777 0.9099 30 1 -0.3633 0.5490 -0.8687 31 1 -0.3633 -1.0268 -0.0411 32 1 3.1077 -0.5071 -1.4390 33 1 1.4426 -0.6154 -2.1016 34 1 2.7001 -2.8750 -1.2441 35 1 0.9630 -2.6330 -0.8728 36 1 0.3765 -2.8474 1.3909 37 1 1.6277 -4.1080 1.2739 38 1 1.6414 -2.9643 2.6377 39 1 1.5569 1.6184 1.9453 40 1 2.0934 -0.2517 4.9274 41 1 2.5731 0.7220 7.1354 42 1 2.8940 4.5972 5.3753 43 1 2.7761 7.8863 1.5015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135273421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:19 Heat of formation + Delta-G solvation = -83.229056 kcal Electronic energy + Delta-G solvation = -28024.047456 eV Core-core repulsion = 23984.176386 eV Total energy + Delta-G solvation = -4039.871070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.85913 -42.07308 -40.88444 -39.28607 -37.96133 -35.79103 -34.49161 -33.19725 -32.77882 -31.20566 -29.83522 -29.32204 -27.33921 -25.20750 -24.67191 -23.63512 -22.92362 -21.67057 -20.64248 -20.16525 -19.76911 -19.01981 -18.16359 -17.26744 -17.15640 -16.91282 -16.62003 -16.15146 -15.93580 -15.83626 -15.58067 -15.33295 -15.06355 -14.75966 -14.74318 -14.38731 -14.28360 -13.91021 -13.68487 -13.62831 -13.35816 -13.23987 -13.14290 -12.82006 -12.62502 -12.50244 -12.41378 -12.21722 -11.78465 -11.68468 -11.64049 -11.47467 -11.34804 -10.95941 -10.89951 -9.82512 -9.60083 -8.77078 -8.53198 -6.27227 0.15645 0.38113 1.30177 1.35696 1.43900 1.49449 1.96699 2.24561 2.62598 2.69842 2.83533 2.98731 3.36420 3.52436 3.65178 3.89573 4.01545 4.10555 4.12192 4.24194 4.29808 4.31640 4.46033 4.50557 4.67171 4.72731 4.81552 4.88119 4.89397 5.00521 5.04325 5.11440 5.12786 5.15573 5.24958 5.27770 5.30748 5.42837 5.45037 5.48477 5.60451 5.80974 5.96165 6.07723 6.78425 6.80254 7.35247 7.45116 8.57880 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.005444 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.540239 B = 5142.120389 C = 7622.227992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.105 3.895 3 H 0.066 0.934 4 C -0.119 4.119 5 C -0.114 4.114 6 C 0.143 3.857 7 H 0.062 0.938 8 C -0.156 4.156 9 N -0.623 5.623 10 C 0.718 3.282 11 O -0.602 6.602 12 N -0.667 5.667 13 C 0.093 3.907 14 C -0.067 4.067 15 C -0.189 4.189 16 C 0.114 3.886 17 F -0.146 7.146 18 C -0.252 4.252 19 C 0.134 3.866 20 O -0.223 6.223 21 C -0.401 4.401 22 H 0.079 0.921 23 C 0.014 3.986 24 N -0.918 5.918 25 Si 0.968 3.032 26 H -0.255 1.255 27 H -0.273 1.273 28 H -0.256 1.256 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.411 0.589 40 H 0.169 0.831 41 H 0.160 0.840 42 H 0.128 0.872 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.653 -19.880 -9.403 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 H 0.085 0.915 4 C -0.157 4.157 5 C -0.152 4.152 6 C 0.040 3.960 7 H 0.081 0.919 8 C -0.214 4.214 9 N -0.360 5.360 10 C 0.421 3.579 11 O -0.483 6.483 12 N -0.313 5.313 13 C -0.003 4.003 14 C -0.087 4.087 15 C -0.209 4.209 16 C 0.094 3.906 17 F -0.125 7.125 18 C -0.273 4.273 19 C 0.081 3.919 20 O -0.130 6.130 21 C -0.477 4.477 22 H 0.097 0.903 23 C -0.185 4.185 24 N -0.558 5.558 25 Si 0.789 3.211 26 H -0.179 1.179 27 H -0.198 1.198 28 H -0.180 1.180 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.247 0.753 40 H 0.186 0.814 41 H 0.178 0.822 42 H 0.146 0.854 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.326 -20.208 -9.044 22.558 hybrid contribution 0.143 1.408 0.018 1.416 sum -4.183 -18.799 -9.027 21.269 Atomic orbital electron populations 1.22161 0.93380 1.03512 1.02593 1.22263 0.95449 0.96199 0.85860 0.91541 1.22824 1.02308 0.94432 0.96165 1.22738 1.04318 0.97013 0.91120 1.21664 0.99156 0.79144 0.96027 0.91935 1.22110 0.99513 0.99694 1.00090 1.47892 1.67810 1.12996 1.07300 1.15503 0.78560 0.81143 0.82683 1.90754 1.53858 1.59763 1.43891 1.42306 1.65092 1.10530 1.13387 1.16925 1.09002 0.88304 0.86114 1.21290 0.97419 1.01225 0.88778 1.20984 1.08313 0.92174 0.99425 1.17503 1.01652 0.92241 0.79242 1.91427 1.91683 1.87292 1.42071 1.20943 1.13130 1.01289 0.91917 1.18728 0.96768 0.89401 0.86956 1.83465 1.82341 1.18113 1.29045 1.20641 1.52885 0.78028 0.96182 0.90331 1.25314 0.95022 0.94435 1.03775 1.69741 1.48651 1.02948 1.34432 0.85258 0.79709 0.79122 0.76995 1.17900 1.19760 1.18013 0.94086 0.89334 0.90643 0.90743 0.87092 0.87965 0.88627 0.92180 0.89587 0.94019 0.75294 0.81383 0.82227 0.85435 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.52 71.98 0.69 -1.93 16 2 C 0.11 2.08 2.99 45.54 0.14 2.21 16 3 H 0.07 1.55 7.35 -2.39 -0.02 1.53 16 4 C -0.12 -1.53 6.58 32.06 0.21 -1.32 16 5 C -0.11 -1.26 6.09 31.78 0.19 -1.06 16 6 C 0.14 2.75 3.46 45.34 0.16 2.91 16 7 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 8 C -0.16 -2.88 9.13 71.98 0.66 -2.22 16 9 N -0.62 -15.60 2.71 -781.83 -2.12 -17.72 16 10 C 0.72 23.90 8.17 179.06 1.46 25.36 16 11 O -0.60 -22.55 12.28 -4.02 -0.05 -22.60 16 12 N -0.67 -23.81 5.24 -316.70 -1.66 -25.47 16 13 C 0.09 3.73 6.48 38.22 0.25 3.98 16 14 C -0.07 -2.45 8.79 22.37 0.20 -2.25 16 15 C -0.19 -6.61 10.02 22.33 0.22 -6.38 16 16 C 0.11 4.54 7.29 22.37 0.16 4.70 16 17 F -0.15 -5.63 17.26 44.97 0.78 -4.85 16 18 C -0.25 -11.51 9.11 22.42 0.20 -11.31 16 19 C 0.13 6.17 6.66 22.69 0.15 6.32 16 20 O -0.22 -11.25 8.01 -22.81 -0.18 -11.43 16 21 C -0.40 -22.56 9.90 67.92 0.67 -21.89 16 22 H 0.08 4.73 5.52 -2.91 -0.02 4.72 16 23 C 0.01 0.77 5.49 84.83 0.47 1.23 16 24 N -0.92 -52.97 13.96 21.61 0.30 -52.67 16 25 Si 0.97 41.59 28.62 68.60 1.96 43.55 16 26 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 28 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.05 7.37 -2.39 -0.02 1.03 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 0.90 8.05 -2.38 -0.02 0.88 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.78 7.40 -2.38 -0.02 0.76 16 36 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.04 1.04 6.84 -2.39 -0.02 1.03 16 39 H 0.41 13.99 6.88 -92.71 -0.64 13.36 16 40 H 0.17 6.01 5.52 -2.91 -0.02 5.99 16 41 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 42 H 0.13 6.33 5.71 -2.91 -0.02 6.31 16 43 H 0.29 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.49 353.06 5.27 -61.22 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.42 Total: 31.62 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.83 Total: -1.65 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -3.48 Total: -95.85 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.23 Total: -34.04 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.78 Total: -4.85 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.96 Total: 43.55 kcal Total: -66.49 5.27 -61.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135273421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.009 kcal (2) G-P(sol) polarization free energy of solvation -66.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds