Wall clock time and date at job start Tue Mar 31 2020 14:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.87697 * 2 1 4 4 C 1.54324 * 109.88380 * 238.82478 * 2 1 3 5 5 H 1.09002 * 110.71950 * 336.74860 * 4 2 1 6 6 C 1.52993 * 110.72091 * 99.84811 * 4 2 1 7 7 C 1.55164 * 102.94158 * 218.39165 * 4 2 1 8 8 C 1.54682 * 101.68021 * 35.33206 * 7 4 2 9 9 N 1.47027 * 109.88441 * 121.01561 * 2 1 3 10 10 C 1.34776 * 125.64655 * 298.32298 * 9 2 1 11 11 O 1.21592 * 119.99851 * 359.97438 * 10 9 2 12 12 N 1.34777 * 119.99976 * 179.97438 * 10 9 2 13 13 C 1.40136 * 119.99834 * 174.32519 * 12 10 9 14 14 C 1.38688 * 120.07662 * 335.22764 * 13 12 10 15 15 C 1.38201 * 120.02258 * 180.02562 * 14 13 12 16 16 C 1.38546 * 120.17351 * 359.97438 * 15 14 13 17 17 F 1.35099 * 119.92674 * 179.97438 * 16 15 14 18 18 C 1.38349 * 120.15227 * 359.67754 * 16 15 14 19 19 C 1.38742 * 119.97318 * 0.62177 * 18 16 15 20 20 O 1.35778 * 120.08710 * 179.67772 * 19 18 16 21 21 C 1.34800 * 117.00187 * 5.18591 * 20 19 18 22 22 H 1.08002 * 119.99786 * 354.69552 * 21 20 19 23 23 C 1.38630 * 120.00503 * 174.96814 * 21 20 19 24 24 N 1.31581 * 119.99664 * 359.73061 * 23 21 20 25 25 Si 1.86797 * 120.00460 * 179.72350 * 23 21 20 26 26 H 1.48500 * 109.46950 * 60.00652 * 25 23 21 27 27 H 1.48500 * 109.47148 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47340 * 300.00380 * 25 23 21 29 29 H 1.09001 * 109.47215 * 300.43546 * 1 2 3 30 30 H 1.09000 * 109.47026 * 60.43790 * 1 2 3 31 31 H 1.09000 * 109.46888 * 180.44325 * 1 2 3 32 32 H 1.09005 * 109.47245 * 60.00518 * 6 4 2 33 33 H 1.09000 * 109.47210 * 180.02562 * 6 4 2 34 34 H 1.09003 * 109.47364 * 300.00062 * 6 4 2 35 35 H 1.08998 * 111.00417 * 153.57562 * 7 4 2 36 36 H 1.09001 * 110.99966 * 277.38583 * 7 4 2 37 37 H 1.09004 * 110.39557 * 204.36672 * 8 7 4 38 38 H 1.08999 * 110.23560 * 82.11269 * 8 7 4 39 39 H 0.96996 * 120.00065 * 354.32406 * 12 10 9 40 40 H 1.07996 * 119.99132 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.91416 * 179.97438 * 15 14 13 42 42 H 1.07993 * 120.01581 * 180.31658 * 18 16 15 43 43 H 0.96998 * 119.99650 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2417 5 1 1.3051 -1.4482 -1.6162 6 6 2.4691 0.2346 -2.3358 7 6 3.2876 -1.5152 -0.6902 8 6 2.8192 -1.8753 0.7394 9 7 2.0300 -0.7124 1.1849 10 6 1.8085 -0.3578 2.4662 11 8 1.1442 0.6290 2.7177 12 7 2.3234 -1.0970 3.4687 13 6 2.1949 -0.6647 4.7955 14 6 2.0276 0.6836 5.0740 15 6 1.9015 1.1087 6.3830 16 6 1.9412 0.1910 7.4201 17 9 1.8180 0.6122 8.6979 18 6 2.1007 -1.1564 7.1501 19 6 2.2341 -1.5895 5.8387 20 8 2.3973 -2.9107 5.5714 21 6 2.3135 -3.7609 6.6141 22 1 2.2099 -3.3759 7.6178 23 6 2.3659 -5.1294 6.3987 24 7 2.4922 -5.5984 5.1758 25 14 2.2576 -6.3074 7.8443 26 1 0.9679 -6.1050 8.5521 27 1 2.3376 -7.7056 7.3505 28 1 3.3816 -6.0481 8.7795 29 1 -0.3634 0.5206 0.8861 30 1 -0.3633 0.5070 -0.8939 31 1 -0.3633 -1.0276 0.0080 32 1 3.2579 0.8855 -1.9587 33 1 2.8355 -0.3166 -3.2018 34 1 1.6087 0.8373 -2.6266 35 1 3.4852 -2.4128 -1.2761 36 1 4.1656 -0.8700 -0.6598 37 1 3.6777 -2.0244 1.3942 38 1 2.1972 -2.7701 0.7181 39 1 2.7829 -1.9282 3.2718 40 1 1.9957 1.4015 4.2679 41 1 1.7716 2.1591 6.5979 42 1 2.1262 -1.8704 7.9599 43 1 2.5293 -6.5559 5.0251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135285259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:18 Heat of formation + Delta-G solvation = -72.301749 kcal Electronic energy + Delta-G solvation = -27508.277418 eV Core-core repulsion = 23468.880191 eV Total energy + Delta-G solvation = -4039.397227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.20229 -40.56602 -39.22645 -37.87942 -36.20242 -34.16014 -32.85777 -32.38249 -31.31363 -29.41220 -28.75052 -27.53825 -25.48725 -24.32745 -23.19537 -22.22809 -21.50543 -20.43336 -19.33530 -18.31661 -18.10563 -17.31028 -16.81380 -16.06568 -15.40539 -15.20214 -14.99793 -14.79531 -14.53561 -14.26713 -14.07209 -13.80535 -13.58985 -13.49331 -13.35242 -13.23823 -12.97506 -12.65100 -12.28445 -12.16523 -12.11282 -11.93411 -11.66280 -11.55155 -11.35997 -11.11632 -10.96874 -10.81803 -10.71534 -10.60040 -10.53880 -9.79960 -9.77633 -9.39900 -8.93742 -8.53957 -7.82741 -6.99337 -6.58405 -4.15828 1.89660 2.15802 2.77426 3.08173 3.09473 3.11487 3.46053 3.86185 4.14157 4.39947 4.41845 4.45803 4.64064 4.87407 5.00233 5.13493 5.15889 5.16446 5.23635 5.31879 5.42573 5.50014 5.59279 5.61140 5.65943 5.77444 5.79835 5.82682 5.85846 6.02162 6.04670 6.14235 6.22036 6.31884 6.48192 6.63622 6.76436 6.94774 6.97347 7.10727 7.22558 7.36218 7.70391 7.85857 8.24894 8.85915 8.88752 9.49285 10.58881 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.004107 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.100132 B = 6815.415843 C = 8900.290755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.159 3.841 3 H 0.074 0.926 4 C -0.102 4.102 5 H 0.086 0.914 6 C -0.140 4.140 7 C -0.126 4.126 8 C 0.095 3.905 9 N -0.633 5.633 10 C 0.722 3.278 11 O -0.580 6.580 12 N -0.662 5.662 13 C 0.086 3.914 14 C -0.064 4.064 15 C -0.223 4.223 16 C 0.122 3.878 17 F -0.152 7.152 18 C -0.255 4.255 19 C 0.153 3.847 20 O -0.172 6.172 21 C -0.391 4.391 22 H 0.093 0.907 23 C 0.043 3.957 24 N -0.862 5.862 25 Si 0.942 3.058 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.412 0.588 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 6.806 -12.194 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.092 0.908 4 C -0.121 4.121 5 H 0.104 0.896 6 C -0.198 4.198 7 C -0.164 4.164 8 C -0.028 4.028 9 N -0.371 5.371 10 C 0.425 3.575 11 O -0.459 6.459 12 N -0.308 5.308 13 C -0.010 4.010 14 C -0.085 4.085 15 C -0.243 4.243 16 C 0.102 3.898 17 F -0.131 7.131 18 C -0.276 4.276 19 C 0.097 3.903 20 O -0.076 6.076 21 C -0.467 4.467 22 H 0.111 0.889 23 C -0.162 4.162 24 N -0.496 5.496 25 Si 0.766 3.234 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.249 0.751 40 H 0.166 0.834 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.067 7.169 -12.257 14.239 hybrid contribution 0.095 -1.136 1.008 1.522 sum 1.162 6.032 -11.249 12.817 Atomic orbital electron populations 1.22173 0.94953 1.02308 1.02792 1.21421 0.94387 0.95776 0.82897 0.90807 1.22317 0.97769 0.97622 0.94413 0.89557 1.21743 1.01530 0.98735 0.97766 1.22799 0.97746 1.00876 0.95023 1.22288 0.95502 0.89251 0.95791 1.47620 1.55804 1.30045 1.03649 1.15342 0.79853 0.83049 0.79234 1.90830 1.44273 1.28675 1.82129 1.42287 1.58781 1.26277 1.03498 1.16720 1.11633 0.91667 0.80932 1.20810 0.97920 0.93369 0.96358 1.20494 1.13391 0.98814 0.91636 1.17452 1.01822 0.92547 0.77950 1.91404 1.93642 1.90836 1.37244 1.20816 1.14916 0.94441 0.97467 1.18681 0.95055 0.85610 0.90929 1.83896 1.77255 1.10217 1.36183 1.21280 1.52588 0.86210 0.86645 0.88918 1.25259 0.96243 0.96404 0.98254 1.70004 1.45358 1.14453 1.19780 0.85758 0.79385 0.78640 0.79603 1.19389 1.20219 1.19384 0.90828 0.92083 0.92614 0.92342 0.92166 0.92295 0.89777 0.90515 0.90534 0.91056 0.75126 0.83353 0.85994 0.83988 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.10 37.15 0.34 -1.67 16 2 C 0.16 1.91 3.05 -66.95 -0.20 1.70 16 3 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 4 C -0.10 -0.90 3.07 -88.78 -0.27 -1.17 16 5 H 0.09 0.73 7.85 -51.93 -0.41 0.32 16 6 C -0.14 -0.98 9.15 37.15 0.34 -0.64 16 7 C -0.13 -1.11 6.53 -24.70 -0.16 -1.27 16 8 C 0.09 1.13 6.52 -2.65 -0.02 1.11 16 9 N -0.63 -9.21 3.07 -168.83 -0.52 -9.73 16 10 C 0.72 13.31 8.09 -86.92 -0.70 12.61 16 11 O -0.58 -11.94 12.55 5.28 0.07 -11.87 16 12 N -0.66 -12.93 5.23 -14.07 -0.07 -13.01 16 13 C 0.09 1.84 6.45 -83.44 -0.54 1.30 16 14 C -0.06 -1.28 8.71 -39.43 -0.34 -1.62 16 15 C -0.22 -4.28 10.02 -39.48 -0.40 -4.67 16 16 C 0.12 2.50 7.29 -39.43 -0.29 2.22 16 17 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 18 C -0.26 -5.69 9.14 -39.35 -0.36 -6.05 16 19 C 0.15 3.60 6.66 -38.94 -0.26 3.34 16 20 O -0.17 -4.54 9.17 0.05 0.00 -4.54 16 21 C -0.39 -10.40 9.48 30.88 0.29 -10.11 16 22 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 23 C 0.04 1.12 5.49 -17.51 -0.10 1.03 16 24 N -0.86 -23.52 13.67 55.48 0.76 -22.77 16 25 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 28 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 29 H 0.07 1.11 6.88 -51.93 -0.36 0.76 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.65 8.03 -51.93 -0.42 0.24 16 37 H 0.08 0.92 7.40 -51.93 -0.38 0.54 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.41 7.86 6.91 -40.82 -0.28 7.58 16 40 H 0.15 2.92 5.78 -52.49 -0.30 2.62 16 41 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.14 3.14 5.63 -52.49 -0.30 2.85 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -29.92 355.45 -7.70 -37.62 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.64 Total: 10.99 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.67 Total: -3.89 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.17 Total: -45.50 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.07 Total: -16.42 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.92 -7.70 -37.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135285259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.678 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds