Wall clock time and date at job start Tue Mar 31 2020 14:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.63825 * 2 1 4 4 C 1.55162 * 110.71812 * 236.67236 * 2 1 3 5 5 C 1.55130 * 101.48356 * 205.96907 * 4 2 1 6 6 N 1.47418 * 104.72265 * 37.29296 * 5 4 2 7 7 C 1.34784 * 125.64796 * 155.82099 * 6 5 4 8 8 O 1.21584 * 120.00169 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99756 * 359.68795 * 7 6 5 10 10 C 1.40134 * 119.99662 * 175.60571 * 9 7 6 11 11 C 1.38692 * 120.07523 * 34.68813 * 10 9 7 12 12 C 1.38203 * 120.01872 * 179.76843 * 11 10 9 13 13 C 1.38549 * 120.17205 * 0.50321 * 12 11 10 14 14 F 1.35103 * 119.92143 * 179.76570 * 13 12 11 15 15 C 1.38341 * 120.15322 * 359.75413 * 13 12 11 16 16 C 1.38731 * 119.97750 * 359.97438 * 15 13 12 17 17 O 1.35776 * 120.09066 * 180.02562 * 16 15 13 18 18 C 1.34811 * 116.99785 * 5.35362 * 17 16 15 19 19 H 1.08001 * 120.00072 * 354.96208 * 18 17 16 20 20 C 1.38633 * 120.00311 * 174.96467 * 18 17 16 21 21 N 1.31576 * 119.99806 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00359 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46802 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46914 * 119.99623 * 22 20 18 25 25 H 1.48501 * 109.47266 * 239.99945 * 22 20 18 26 26 C 1.47017 * 108.70596 * 335.55533 * 6 5 4 27 27 H 1.08995 * 109.88913 * 120.85956 * 26 6 5 28 28 C 1.53011 * 109.88306 * 241.87093 * 26 6 5 29 29 H 1.08995 * 109.46884 * 296.84937 * 1 2 3 30 30 H 1.09000 * 109.47615 * 56.85416 * 1 2 3 31 31 H 1.09005 * 109.47157 * 176.85297 * 1 2 3 32 32 H 1.08999 * 111.00069 * 324.20353 * 4 2 1 33 33 H 1.08997 * 111.00265 * 88.01974 * 4 2 1 34 34 H 1.09007 * 110.49326 * 278.45126 * 5 4 2 35 35 H 1.08996 * 110.34369 * 156.06178 * 5 4 2 36 36 H 0.96996 * 120.00054 * 355.60699 * 9 7 6 37 37 H 1.07993 * 119.98988 * 0.02562 * 11 10 9 38 38 H 1.08000 * 119.91145 * 180.27713 * 12 11 10 39 39 H 1.08003 * 120.00769 * 180.02562 * 15 13 12 40 40 H 0.96997 * 120.00197 * 180.02562 * 21 20 18 41 41 H 1.08996 * 109.46597 * 58.54308 * 28 26 6 42 42 H 1.08995 * 109.47155 * 178.54628 * 28 26 6 43 43 H 1.08996 * 109.46649 * 298.54254 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7974 -1.2126 5 6 3.4666 -1.2466 -0.6842 6 7 3.2445 -1.5495 0.7413 7 6 3.9924 -2.3812 1.4934 8 8 3.7158 -2.5562 2.6644 9 7 5.0434 -3.0232 0.9460 10 6 5.8757 -3.8154 1.7481 11 6 5.3422 -4.5298 2.8104 12 6 6.1634 -5.3145 3.5978 13 6 7.5222 -5.3820 3.3357 14 9 8.3210 -6.1470 4.1116 15 6 8.0628 -4.6682 2.2812 16 6 7.2434 -3.8829 1.4833 17 8 7.7715 -3.1818 0.4474 18 6 9.0779 -3.3776 0.1788 19 1 9.6743 -4.0039 0.8256 20 6 9.6560 -2.7749 -0.9278 21 7 8.9296 -2.0114 -1.7156 22 14 11.4665 -3.0456 -1.2997 23 1 12.0555 -3.9378 -0.2690 24 1 11.6084 -3.6744 -2.6375 25 1 12.1747 -1.7404 -1.2885 26 6 2.0761 -0.7893 1.2084 27 1 1.3141 -1.4731 1.5824 28 6 2.4945 0.1794 2.3165 29 1 -0.3633 0.4641 0.9168 30 1 -0.3634 0.5619 -0.8604 31 1 -0.3634 -1.0262 -0.0564 32 1 1.4451 -1.6559 -1.4348 33 1 2.1843 -0.1553 -2.0870 34 1 4.1947 -0.4427 -0.7923 35 1 3.8031 -2.1380 -1.2135 36 1 5.2237 -2.9370 -0.0032 37 1 4.2841 -4.4762 3.0198 38 1 5.7453 -5.8736 4.4218 39 1 9.1222 -4.7228 2.0787 40 1 9.3339 -1.5900 -2.4901 41 1 3.2617 0.8548 1.9379 42 1 1.6289 0.7574 2.6397 43 1 2.8910 -0.3841 3.1610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135285282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:22 Heat of formation + Delta-G solvation = -73.748928 kcal Electronic energy + Delta-G solvation = -27542.299058 eV Core-core repulsion = 23502.839077 eV Total energy + Delta-G solvation = -4039.459981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.22032 -40.51251 -39.21154 -37.83920 -36.21875 -34.12187 -32.83046 -32.39407 -31.26512 -29.42274 -28.72333 -27.51873 -25.49185 -24.29965 -23.16916 -22.19627 -21.50171 -20.42410 -19.32015 -18.31583 -18.10336 -17.31901 -16.80746 -15.94691 -15.41298 -15.21408 -15.06069 -14.86231 -14.47992 -14.25812 -14.04709 -13.74455 -13.58337 -13.48788 -13.27628 -13.23371 -12.99065 -12.66036 -12.35659 -12.10927 -12.10759 -11.90980 -11.64745 -11.52911 -11.33884 -11.08494 -10.94861 -10.79784 -10.70704 -10.57640 -10.51477 -9.78690 -9.72552 -9.37676 -8.95756 -8.51317 -7.83868 -7.06470 -6.59708 -4.17321 1.88525 2.15496 2.80860 3.05785 3.08355 3.13592 3.50147 3.85519 4.17398 4.38250 4.42700 4.48242 4.66433 4.88862 4.97092 5.14768 5.16898 5.17362 5.25905 5.34263 5.44988 5.52079 5.61609 5.62228 5.68685 5.76760 5.82337 5.84857 5.88031 6.05302 6.06252 6.15571 6.23320 6.33961 6.50943 6.61735 6.79191 6.94403 6.95992 7.11052 7.23334 7.37268 7.69663 7.84905 8.26960 8.86092 8.91478 9.48894 10.57508 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.004217 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.972567 B = 6638.745100 C = 8811.571906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.126 4.126 5 C 0.097 3.903 6 N -0.633 5.633 7 C 0.723 3.277 8 O -0.583 6.583 9 N -0.663 5.663 10 C 0.078 3.922 11 C -0.050 4.050 12 C -0.228 4.228 13 C 0.127 3.873 14 F -0.152 7.152 15 C -0.258 4.258 16 C 0.157 3.843 17 O -0.169 6.169 18 C -0.392 4.392 19 H 0.095 0.905 20 C 0.043 3.957 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.159 3.841 27 H 0.073 0.927 28 C -0.164 4.164 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.410 0.590 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.143 0.857 40 H 0.271 0.729 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 2.946 -0.097 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.105 0.895 4 C -0.164 4.164 5 C -0.027 4.027 6 N -0.372 5.372 7 C 0.426 3.574 8 O -0.461 6.461 9 N -0.311 5.311 10 C -0.016 4.016 11 C -0.071 4.071 12 C -0.248 4.248 13 C 0.107 3.893 14 F -0.131 7.131 15 C -0.279 4.279 16 C 0.101 3.899 17 O -0.072 6.072 18 C -0.468 4.468 19 H 0.112 0.888 20 C -0.162 4.162 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.201 1.201 26 C 0.056 3.944 27 H 0.091 0.909 28 C -0.222 4.222 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.246 0.754 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.267 3.087 0.428 13.628 hybrid contribution 1.389 -0.151 -0.561 1.506 sum -11.878 2.936 -0.132 12.236 Atomic orbital electron populations 1.21747 0.93874 1.02159 1.01997 1.22320 0.96185 0.99500 0.94146 0.89541 1.22879 0.95687 1.00286 0.97593 1.22362 0.97684 1.01250 0.81371 1.47605 1.31766 1.46800 1.10982 1.15367 0.79679 0.78282 0.84083 1.90849 1.72099 1.68380 1.14763 1.42225 1.27847 1.48965 1.12027 1.16672 0.86121 1.00417 0.98438 1.20684 1.00318 0.92839 0.93265 1.20489 0.91665 1.07570 1.05067 1.17456 0.88198 0.92839 0.90785 1.91409 1.74028 1.73727 1.73912 1.20835 1.01788 1.05690 0.99581 1.18821 0.89786 0.91465 0.89832 1.83938 1.27120 1.54872 1.41278 1.21404 0.82072 1.32096 1.11182 0.88805 1.25269 1.00478 0.95737 0.94698 1.70021 1.36382 1.28641 1.14426 0.85626 0.80251 0.78611 0.78895 1.18955 1.20039 1.20069 1.21408 0.86670 0.92280 0.94089 0.90857 1.22175 1.01309 0.99157 0.99582 0.92319 0.92178 0.92368 0.90501 0.89834 0.90931 0.90655 0.75385 0.83953 0.85972 0.83980 0.91951 0.92605 0.92120 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.14 37.16 0.34 -0.67 16 2 C -0.10 -0.93 3.07 -88.78 -0.27 -1.20 16 3 H 0.09 0.76 7.85 -51.93 -0.41 0.35 16 4 C -0.13 -1.15 6.54 -24.46 -0.16 -1.31 16 5 C 0.10 1.19 6.63 -2.41 -0.02 1.17 16 6 N -0.63 -9.40 3.06 -168.56 -0.52 -9.91 16 7 C 0.72 13.46 8.13 -86.91 -0.71 12.75 16 8 O -0.58 -12.10 12.80 5.29 0.07 -12.03 16 9 N -0.66 -12.95 5.15 -14.07 -0.07 -13.03 16 10 C 0.08 1.68 6.33 -83.44 -0.53 1.16 16 11 C -0.05 -1.00 8.70 -39.43 -0.34 -1.35 16 12 C -0.23 -4.34 10.02 -39.48 -0.40 -4.73 16 13 C 0.13 2.59 7.29 -39.43 -0.29 2.31 16 14 F -0.15 -2.96 17.26 2.25 0.04 -2.92 16 15 C -0.26 -5.73 9.14 -39.36 -0.36 -6.09 16 16 C 0.16 3.69 6.66 -38.94 -0.26 3.43 16 17 O -0.17 -4.47 9.32 0.02 0.00 -4.47 16 18 C -0.39 -10.38 9.49 30.88 0.29 -10.09 16 19 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 20 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 21 N -0.86 -23.39 13.67 55.48 0.76 -22.63 16 22 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 C 0.16 1.96 3.05 -66.95 -0.20 1.75 16 27 H 0.07 0.93 7.83 -51.93 -0.41 0.52 16 28 C -0.16 -2.07 9.10 37.16 0.34 -1.73 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.00 16 32 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.92 7.22 -51.93 -0.38 0.55 16 36 H 0.41 7.73 7.02 -40.82 -0.29 7.44 16 37 H 0.14 2.77 6.19 -52.49 -0.32 2.45 16 38 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 39 H 0.14 3.15 5.64 -52.48 -0.30 2.85 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.14 6.89 -51.93 -0.36 0.78 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -29.91 356.10 -7.70 -37.61 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.66 Total: 10.88 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.66 Total: -3.58 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.17 Total: -45.57 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.07 Total: -16.50 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.91 -7.70 -37.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135285282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.142 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds