Wall clock time and date at job start Tue Mar 31 2020 14:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.58301 * 2 1 4 4 C 1.53191 * 109.70218 * 120.35742 * 2 1 3 5 5 C 1.53046 * 109.31132 * 174.49770 * 4 2 1 6 6 C 1.53040 * 109.53213 * 298.62701 * 5 4 2 7 7 C 1.52763 * 109.38280 * 61.24396 * 6 5 4 8 8 N 1.46922 * 109.00984 * 305.58701 * 7 6 5 9 9 C 1.34778 * 120.62862 * 233.58754 * 8 7 6 10 10 O 1.21601 * 119.99805 * 185.99115 * 9 8 7 11 11 N 1.34776 * 120.00153 * 5.98727 * 9 8 7 12 12 C 1.40135 * 119.99876 * 177.67471 * 11 9 8 13 13 C 1.38693 * 120.08132 * 25.13236 * 12 11 9 14 14 C 1.38197 * 120.02668 * 180.30006 * 13 12 11 15 15 C 1.38539 * 120.17187 * 359.72447 * 14 13 12 16 16 F 1.35105 * 119.92695 * 180.02562 * 15 14 13 17 17 C 1.38346 * 120.15243 * 0.02562 * 15 14 13 18 18 C 1.38735 * 119.97724 * 359.97438 * 17 15 14 19 19 O 1.35776 * 120.08809 * 180.02562 * 18 17 15 20 20 C 1.34804 * 117.00272 * 4.58338 * 19 18 17 21 21 H 1.08009 * 119.99500 * 354.98108 * 20 19 18 22 22 C 1.38631 * 120.00450 * 174.98808 * 20 19 18 23 23 N 1.31573 * 119.99780 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99952 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47019 * 269.99273 * 24 22 20 26 26 H 1.48498 * 109.47198 * 29.99773 * 24 22 20 27 27 H 1.48508 * 109.47074 * 149.99815 * 24 22 20 28 28 H 1.09004 * 109.46598 * 174.30055 * 1 2 3 29 29 H 1.08994 * 109.47230 * 294.29608 * 1 2 3 30 30 H 1.08993 * 109.47152 * 54.30407 * 1 2 3 31 31 H 1.09005 * 109.49590 * 294.44024 * 4 2 1 32 32 H 1.08995 * 109.50147 * 54.54288 * 4 2 1 33 33 H 1.08996 * 109.46491 * 58.64566 * 5 4 2 34 34 H 1.08997 * 109.45750 * 178.61276 * 5 4 2 35 35 H 1.09006 * 109.49512 * 181.31478 * 6 5 4 36 36 H 1.08994 * 109.50306 * 301.41443 * 6 5 4 37 37 H 1.09003 * 109.51015 * 185.70151 * 7 6 5 38 38 H 1.09004 * 109.43602 * 65.42010 * 7 6 5 39 39 H 0.96992 * 119.99939 * 357.67183 * 11 9 8 40 40 H 1.08007 * 119.98871 * 0.02562 * 13 12 11 41 41 H 1.08005 * 119.91534 * 179.70022 * 14 13 12 42 42 H 1.08008 * 120.01130 * 180.02562 * 17 15 14 43 43 H 0.97003 * 119.99388 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 3.5707 -0.8443 1.1674 6 6 3.9602 -1.6608 -0.0670 7 6 3.4648 -0.9475 -1.3237 8 7 2.0226 -0.6980 -1.1953 9 6 1.1671 -1.1069 -2.1532 10 8 -0.0079 -0.8004 -2.0900 11 7 1.6140 -1.8554 -3.1811 12 6 0.7161 -2.3214 -4.1508 13 6 -0.4703 -1.6417 -4.3835 14 6 -1.3578 -2.1057 -5.3357 15 6 -1.0636 -3.2466 -6.0645 16 9 -1.9346 -3.6956 -6.9946 17 6 0.1200 -3.9274 -5.8420 18 6 1.0155 -3.4671 -4.8875 19 8 2.1781 -4.1331 -4.6677 20 6 2.4464 -5.1789 -5.4748 21 1 1.7144 -5.5032 -6.1997 22 6 3.6618 -5.8382 -5.3744 23 7 4.5537 -5.4428 -4.4915 24 14 4.0332 -7.2879 -6.4924 25 1 3.5807 -8.5436 -5.8416 26 1 3.3188 -7.1137 -7.7826 27 1 5.4954 -7.3588 -6.7419 28 1 -0.3633 -1.0227 -0.1021 29 1 -0.3633 0.4228 0.9366 30 1 -0.3633 0.5996 -0.8345 31 1 1.7689 -0.1672 2.1365 32 1 1.6081 -1.7257 1.2905 33 1 4.0072 0.1519 1.0964 34 1 3.9430 -1.3407 2.0635 35 1 5.0447 -1.7623 -0.1085 36 1 3.5038 -2.6488 -0.0086 37 1 3.6510 -1.5746 -2.1956 38 1 3.9911 0.0007 -1.4339 39 1 2.5570 -2.0715 -3.2496 40 1 -0.7027 -0.7519 -3.8171 41 1 -2.2834 -1.5778 -5.5120 42 1 0.3473 -4.8164 -6.4117 43 1 5.4042 -5.9040 -4.4216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135309380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:22 Heat of formation + Delta-G solvation = -55.898977 kcal Electronic energy + Delta-G solvation = -27959.042775 eV Core-core repulsion = 23920.356825 eV Total energy + Delta-G solvation = -4038.685949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.19824 -40.76912 -39.14325 -37.56445 -36.19223 -34.57750 -32.74875 -32.44009 -32.16366 -29.35467 -28.28777 -27.21890 -25.50203 -24.55435 -22.82525 -22.18045 -21.41331 -20.79918 -19.33450 -18.32263 -18.02708 -17.28364 -16.73341 -15.77456 -15.33376 -15.19198 -14.99714 -14.86470 -14.51372 -14.39224 -14.26536 -13.98560 -13.71996 -13.62897 -13.42254 -13.35685 -13.01816 -12.38620 -12.33066 -12.23371 -11.85498 -11.69055 -11.58970 -11.39241 -11.08633 -11.02513 -10.89352 -10.74160 -10.67166 -10.62282 -10.52135 -9.74763 -9.66491 -8.95844 -8.81230 -8.48379 -7.81170 -6.99858 -6.59724 -4.16957 1.91034 2.16628 2.80101 3.06505 3.08227 3.12538 3.44909 3.85230 4.09799 4.40766 4.71929 4.75349 4.80563 4.89994 4.97972 5.00596 5.15874 5.22372 5.31733 5.41302 5.57434 5.62640 5.66018 5.74973 5.78205 5.84487 5.88164 5.97199 6.01823 6.08750 6.21664 6.23853 6.37333 6.44145 6.66968 6.74768 6.85386 6.95166 6.97765 7.11965 7.21072 7.29200 7.72092 7.85117 8.24258 8.85698 8.88535 9.48661 10.57609 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010562 B = 0.004782 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.361665 B = 5853.755293 C = 8286.906638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.133 4.133 5 C -0.118 4.118 6 C -0.136 4.136 7 C 0.109 3.891 8 N -0.625 5.625 9 C 0.707 3.293 10 O -0.576 6.576 11 N -0.664 5.664 12 C 0.083 3.917 13 C -0.067 4.067 14 C -0.224 4.224 15 C 0.122 3.878 16 F -0.153 7.153 17 C -0.256 4.256 18 C 0.152 3.848 19 O -0.173 6.173 20 C -0.391 4.391 21 H 0.094 0.906 22 C 0.043 3.957 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.266 1.266 27 H -0.277 1.277 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.411 0.589 40 H 0.157 0.843 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 9.102 8.269 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.085 0.915 4 C -0.172 4.172 5 C -0.156 4.156 6 C -0.174 4.174 7 C -0.015 4.015 8 N -0.363 5.363 9 C 0.410 3.590 10 O -0.456 6.456 11 N -0.313 5.313 12 C -0.013 4.013 13 C -0.087 4.087 14 C -0.245 4.245 15 C 0.102 3.898 16 F -0.132 7.132 17 C -0.277 4.277 18 C 0.096 3.904 19 O -0.076 6.076 20 C -0.467 4.467 21 H 0.111 0.889 22 C -0.162 4.162 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.191 1.191 27 H -0.202 1.202 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.249 0.751 40 H 0.175 0.825 41 H 0.139 0.861 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.100 9.273 8.563 12.669 hybrid contribution 0.678 -1.187 -0.807 1.587 sum -0.422 8.086 7.756 11.212 Atomic orbital electron populations 1.22200 0.92473 1.04192 1.00568 1.21070 0.95860 0.94303 0.82854 0.91517 1.22046 0.96009 1.01635 0.97479 1.21507 0.95732 1.00270 0.98042 1.21838 1.01401 0.99855 0.94352 1.21593 0.80527 1.00330 0.99015 1.47319 1.06408 1.61656 1.20956 1.15845 0.84637 0.79126 0.79395 1.90834 1.15474 1.61747 1.77536 1.42591 1.11606 1.53180 1.23890 1.16770 0.94033 0.94737 0.95731 1.21067 0.91732 0.99887 0.96039 1.20538 1.02598 0.99191 1.02138 1.17478 0.88087 0.94922 0.89352 1.91405 1.68678 1.89143 1.63956 1.20814 0.95470 1.05453 1.05970 1.18737 0.88332 0.89671 0.93655 1.83905 1.31123 1.40522 1.52043 1.21332 1.02167 1.06429 1.16733 0.88889 1.25253 0.94383 0.98991 0.97546 1.70005 1.07037 1.39866 1.32727 0.85695 0.78188 0.79938 0.79600 1.19808 1.19064 1.20187 0.91434 0.94296 0.90037 0.90965 0.91376 0.91925 0.91790 0.90519 0.91076 0.89732 0.91353 0.75062 0.82549 0.86051 0.84038 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 7.62 37.16 0.28 -1.52 16 2 C 0.16 1.95 3.49 -67.60 -0.24 1.72 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -1.37 5.38 -26.61 -0.14 -1.51 16 5 C -0.12 -1.10 5.89 -26.69 -0.16 -1.26 16 6 C -0.14 -1.50 6.06 -26.83 -0.16 -1.67 16 7 C 0.11 1.33 6.41 -3.93 -0.03 1.31 16 8 N -0.63 -8.85 2.98 -171.17 -0.51 -9.36 16 9 C 0.71 12.42 7.99 -86.92 -0.69 11.73 16 10 O -0.58 -10.88 8.85 5.28 0.05 -10.83 16 11 N -0.66 -12.63 5.21 -14.07 -0.07 -12.70 16 12 C 0.08 1.74 6.48 -83.44 -0.54 1.20 16 13 C -0.07 -1.31 8.78 -39.43 -0.35 -1.65 16 14 C -0.22 -4.25 10.02 -39.49 -0.40 -4.65 16 15 C 0.12 2.48 7.29 -39.43 -0.29 2.19 16 16 F -0.15 -2.98 17.26 2.25 0.04 -2.95 16 17 C -0.26 -5.67 9.14 -39.36 -0.36 -6.03 16 18 C 0.15 3.53 6.67 -38.94 -0.26 3.28 16 19 O -0.17 -4.51 9.17 0.04 0.00 -4.51 16 20 C -0.39 -10.29 9.48 30.88 0.29 -10.00 16 21 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 22 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 23 N -0.86 -23.25 13.67 55.48 0.76 -22.49 16 24 Si 0.94 19.67 29.55 -169.99 -5.02 14.64 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 28 H 0.07 1.06 6.95 -51.93 -0.36 0.70 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.21 6.55 -51.93 -0.34 0.87 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.16 5.56 -51.93 -0.29 0.87 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.41 7.68 5.80 -40.82 -0.24 7.45 16 40 H 0.16 2.99 5.54 -52.48 -0.29 2.70 16 41 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 42 H 0.14 3.13 5.63 -52.48 -0.30 2.83 16 43 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -28.55 345.07 -8.14 -36.68 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.45 Total: 12.17 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.13 Total: -5.86 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.18 Total: -44.55 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.05 Total: -15.34 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.55 -8.14 -36.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135309380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.216 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds