Wall clock time and date at job start Tue Mar 31 2020 13:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 N 1.46500 * 109.46735 * 119.99679 * 2 1 3 5 5 C 1.46761 * 124.35133 * 119.99722 * 4 2 1 6 6 C 1.54826 * 105.49702 * 197.01309 * 5 4 2 7 7 C 1.54625 * 101.60600 * 334.56889 * 6 5 4 8 8 H 1.09000 * 110.48552 * 143.56827 * 7 6 5 9 9 N 1.46504 * 110.48578 * 266.07777 * 7 6 5 10 10 C 1.39921 * 119.99992 * 203.15731 * 9 7 6 11 11 C 1.38720 * 120.07936 * 359.97438 * 10 9 7 12 12 C 1.38214 * 120.01624 * 180.02562 * 11 10 9 13 13 C 1.38529 * 120.17764 * 0.02562 * 12 11 10 14 14 F 1.35097 * 119.92380 * 180.27645 * 13 12 11 15 15 C 1.38355 * 120.15935 * 359.97438 * 13 12 11 16 16 C 1.38722 * 119.98174 * 0.02562 * 15 13 12 17 17 O 1.35789 * 120.09337 * 179.97438 * 16 15 13 18 18 C 1.34807 * 116.99807 * 354.40573 * 17 16 15 19 19 H 1.07998 * 119.99982 * 5.05648 * 18 17 16 20 20 C 1.38629 * 120.00344 * 185.05927 * 18 17 16 21 21 N 1.31575 * 120.00021 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99753 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47306 * 90.00048 * 22 20 18 24 24 H 1.48499 * 109.46792 * 209.99768 * 22 20 18 25 25 H 1.48493 * 109.47266 * 330.00038 * 22 20 18 26 26 C 1.34425 * 124.35114 * 299.97448 * 4 2 1 27 27 O 1.21277 * 124.94135 * 359.57667 * 26 4 2 28 28 H 1.08997 * 109.47417 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47395 * 300.00944 * 1 2 3 30 30 H 1.09005 * 109.47174 * 59.99690 * 1 2 3 31 31 H 1.08997 * 109.46943 * 239.99555 * 2 1 3 32 32 H 1.08992 * 109.46968 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46595 * 299.99619 * 3 2 1 34 34 H 1.09004 * 109.47198 * 59.99538 * 3 2 1 35 35 H 1.08998 * 110.24466 * 315.99921 * 5 4 2 36 36 H 1.09009 * 110.24687 * 77.90674 * 5 4 2 37 37 H 1.09003 * 111.08132 * 216.49033 * 6 5 4 38 38 H 1.08999 * 111.00947 * 92.62011 * 6 5 4 39 39 H 0.96998 * 119.99864 * 23.16402 * 9 7 6 40 40 H 1.07999 * 119.99282 * 0.02562 * 11 10 9 41 41 H 1.07999 * 119.91138 * 180.02562 * 12 11 10 42 42 H 1.07996 * 120.01317 * 180.02562 * 15 13 12 43 43 H 0.97001 * 119.99912 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8654 -1.8888 1.1730 6 6 2.7608 -2.4970 2.5929 7 6 2.4044 -1.2527 3.4388 8 1 1.7088 -1.5189 4.2347 9 7 3.6162 -0.6494 3.9992 10 6 3.5344 0.1493 5.1451 11 6 2.3068 0.3715 5.7516 12 6 2.2275 1.1612 6.8832 13 6 3.3717 1.7332 7.4148 14 9 3.2891 2.4996 8.5243 15 6 4.5999 1.5164 6.8158 16 6 4.6871 0.7250 5.6798 17 8 5.8913 0.5112 5.0898 18 6 6.9454 1.1885 5.5872 19 1 6.8263 1.8013 6.4685 20 6 8.1821 1.0986 4.9675 21 7 9.2108 1.7601 5.4527 22 14 8.3882 0.0382 3.4435 23 1 8.1181 0.8541 2.2324 24 1 9.7770 -0.4847 3.3884 25 1 7.4334 -1.0978 3.4980 26 6 1.7483 -0.3079 2.4563 27 8 1.0770 0.6551 2.7610 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.4963 -2.5973 0.4315 36 1 3.8977 -1.6167 0.9527 37 1 3.7133 -2.9231 2.9081 38 1 1.9667 -3.2421 2.6414 39 1 4.4751 -0.8037 3.5758 40 1 1.4128 -0.0726 5.3395 41 1 1.2709 1.3327 7.3543 42 1 5.4905 1.9632 7.2325 43 1 10.0763 1.6969 5.0192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155452655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:46 Heat of formation + Delta-G solvation = -69.080104 kcal Electronic energy + Delta-G solvation = -27923.848309 eV Core-core repulsion = 23884.590783 eV Total energy + Delta-G solvation = -4039.257526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.08459 -40.78373 -39.23409 -36.83581 -36.42983 -35.61317 -33.40157 -32.40006 -29.83620 -29.46958 -28.03679 -27.31526 -26.36610 -25.32697 -22.71776 -22.51393 -21.38202 -21.09392 -18.87962 -18.16508 -17.88765 -17.02213 -16.78921 -16.01772 -15.44245 -15.41517 -15.22051 -14.90347 -14.50303 -14.31962 -14.04350 -13.94957 -13.80283 -13.69204 -13.49864 -13.23099 -13.03217 -12.87254 -12.34824 -12.22057 -12.15989 -12.01076 -11.83162 -11.75669 -11.44955 -11.40195 -11.34578 -11.20978 -10.90411 -10.52431 -10.40005 -10.10186 -9.57096 -9.13428 -8.91653 -8.77994 -7.83154 -6.65840 -6.44584 -4.09459 2.03150 2.12764 2.54002 2.86266 3.14105 3.17617 3.26679 3.84209 4.15824 4.21306 4.24132 4.43220 4.62676 4.65440 4.76850 4.85751 4.95526 5.03002 5.04746 5.15554 5.23199 5.38984 5.46557 5.52542 5.55227 5.61622 5.63103 5.67702 5.75797 5.78993 6.03022 6.03824 6.18017 6.23531 6.50242 6.56686 6.74989 6.96870 7.00232 7.08562 7.42730 7.58839 7.82302 7.98506 8.09615 8.24074 8.89641 9.48359 10.63448 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.005137 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.430194 B = 5449.723536 C = 7271.406353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.154 3.846 3 C -0.169 4.169 4 N -0.618 5.618 5 C 0.101 3.899 6 C -0.142 4.142 7 C 0.128 3.872 8 H 0.109 0.891 9 N -0.728 5.728 10 C 0.142 3.858 11 C -0.122 4.122 12 C -0.189 4.189 13 C 0.092 3.908 14 F -0.154 7.154 15 C -0.227 4.227 16 C 0.132 3.868 17 O -0.218 6.218 18 C -0.384 4.384 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.282 1.282 25 H -0.261 1.261 26 C 0.504 3.496 27 O -0.513 6.513 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.407 0.593 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.145 0.855 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 -9.653 -10.872 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.051 3.949 3 C -0.227 4.227 4 N -0.354 5.354 5 C -0.022 4.022 6 C -0.180 4.180 7 C 0.018 3.982 8 H 0.127 0.873 9 N -0.364 5.364 10 C 0.043 3.957 11 C -0.145 4.145 12 C -0.209 4.209 13 C 0.071 3.929 14 F -0.133 7.133 15 C -0.248 4.248 16 C 0.079 3.921 17 O -0.124 6.124 18 C -0.460 4.460 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.185 1.185 26 C 0.289 3.711 27 O -0.387 6.387 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.243 0.757 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.163 0.837 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.410 -9.196 -10.960 20.306 hybrid contribution 0.723 -0.138 -0.633 0.970 sum -13.687 -9.333 -11.593 20.220 Atomic orbital electron populations 1.22173 0.94812 1.02111 1.03309 1.20906 0.94302 0.93264 0.86394 1.22188 1.01545 0.95740 1.03257 1.48461 1.51378 1.29389 1.06209 1.22164 0.95332 0.86629 0.98094 1.22976 1.04626 0.96713 0.93688 1.21405 0.89778 0.91711 0.95324 0.87317 1.43944 1.07100 1.56227 1.29147 1.17005 0.91617 0.97416 0.89683 1.20025 0.94979 1.02563 0.96974 1.20387 0.96842 1.03984 0.99718 1.17273 0.94261 0.95692 0.85679 1.91398 1.97181 1.73844 1.50857 1.20927 0.97620 1.06853 0.99399 1.18235 0.85216 0.96043 0.92653 1.83468 1.13210 1.60966 1.54712 1.20722 0.85508 1.26767 1.12998 0.87627 1.24438 0.93922 0.97020 0.98651 1.69652 1.00976 1.40406 1.40599 0.86195 0.77661 0.80907 0.82104 1.20045 1.20787 1.18514 1.21670 0.79706 0.85825 0.83877 1.90685 1.38826 1.27867 1.81303 0.92653 0.90906 0.91639 0.89782 0.92393 0.91696 0.90774 0.90323 0.91034 0.88160 0.88751 0.75674 0.85699 0.86184 0.83731 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.20 37.16 0.34 -1.23 16 2 C 0.15 1.55 3.47 -67.93 -0.24 1.31 16 3 C -0.17 -1.96 9.20 37.16 0.34 -1.62 16 4 N -0.62 -7.00 2.83 -164.63 -0.47 -7.47 16 5 C 0.10 0.85 7.31 -2.94 -0.02 0.83 16 6 C -0.14 -1.19 6.80 -24.91 -0.17 -1.36 16 7 C 0.13 1.62 2.93 -67.94 -0.20 1.42 16 8 H 0.11 1.30 6.51 -51.93 -0.34 0.96 16 9 N -0.73 -11.84 5.29 -52.00 -0.27 -12.12 16 10 C 0.14 2.75 6.67 -83.52 -0.56 2.19 16 11 C -0.12 -2.19 9.21 -39.41 -0.36 -2.55 16 12 C -0.19 -3.47 10.02 -39.48 -0.40 -3.87 16 13 C 0.09 1.89 7.29 -39.43 -0.29 1.60 16 14 F -0.15 -3.11 17.26 2.25 0.04 -3.07 16 15 C -0.23 -5.12 9.14 -39.36 -0.36 -5.48 16 16 C 0.13 3.00 6.67 -38.93 -0.26 2.74 16 17 O -0.22 -5.42 7.83 -0.01 0.00 -5.42 16 18 C -0.38 -10.57 9.94 30.88 0.31 -10.26 16 19 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 20 C 0.06 1.72 5.49 -17.52 -0.10 1.62 16 21 N -0.88 -25.05 13.96 55.48 0.77 -24.28 16 22 Si 0.91 20.60 28.62 -169.99 -4.86 15.73 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 26 C 0.50 7.20 7.05 -10.86 -0.08 7.13 16 27 O -0.51 -9.10 15.03 5.56 0.08 -9.01 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.89 6.80 -51.93 -0.35 0.53 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.09 6.77 -51.93 -0.35 0.74 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.10 0.81 8.05 -51.93 -0.42 0.40 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.41 6.81 7.97 -40.82 -0.33 6.49 16 40 H 0.13 1.98 6.16 -52.49 -0.32 1.66 16 41 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 42 H 0.15 3.44 5.64 -52.49 -0.30 3.15 16 43 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -31.31 357.32 -6.98 -38.29 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.63 Total: 9.51 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.03 Total: -7.55 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.03 Total: -43.86 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.86 Total: 15.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.31 -6.98 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155452655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.792 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds