Wall clock time and date at job start Tue Mar 31 2020 13:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47042 * 90.00112 * 9 7 5 11 11 H 1.48502 * 109.47335 * 210.00151 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99921 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39946 * 120.00246 * 175.37992 * 16 14 13 18 18 C 1.38862 * 120.07206 * 214.81634 * 17 16 14 19 19 C 1.38113 * 119.93034 * 179.76679 * 18 17 16 20 20 C 1.38284 * 120.06849 * 0.50598 * 19 18 17 21 21 C 1.50703 * 119.92720 * 179.72085 * 20 19 18 22 22 C 1.52997 * 109.47074 * 270.01944 * 21 20 19 23 23 S 1.81399 * 109.46899 * 180.02562 * 22 21 20 24 24 C 1.81399 * 103.00077 * 180.02562 * 23 22 21 25 25 C 1.38275 * 120.14130 * 359.74704 * 20 19 18 26 26 C 1.38121 * 120.06968 * 359.97438 * 25 20 19 27 27 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 28 28 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 30 30 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 31 31 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 32 32 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 33 33 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 34 34 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 35 35 H 1.07997 * 120.03860 * 359.97438 * 18 17 16 36 36 H 1.08003 * 119.96602 * 180.25399 * 19 18 17 37 37 H 1.08992 * 109.47400 * 30.02691 * 21 20 19 38 38 H 1.09002 * 109.46612 * 150.02578 * 21 20 19 39 39 H 1.08992 * 109.47618 * 300.00614 * 22 21 20 40 40 H 1.09002 * 109.46883 * 60.00800 * 22 21 20 41 41 H 1.09001 * 109.47281 * 300.00159 * 24 23 22 42 42 H 1.09006 * 109.47421 * 60.00061 * 24 23 22 43 43 H 1.08997 * 109.47560 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.96826 * 180.02562 * 25 20 19 45 45 H 1.07996 * 120.03604 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4416 2.1142 2.0847 11 1 6.4397 -0.3098 2.1546 12 1 6.6135 0.8417 0.0276 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2122 3.7853 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1151 4.2403 -4.0532 20 6 -3.7719 4.7915 -2.9683 21 6 -5.1659 5.3401 -3.1326 22 6 -5.0900 6.8196 -3.5146 23 16 -6.7680 7.4801 -3.7117 24 6 -6.4744 9.2139 -4.1569 25 6 -3.1522 4.8409 -1.7332 26 6 -1.8747 4.3390 -1.5794 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8932 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8294 -0.0619 2.9494 33 1 2.2718 2.1232 -1.9978 34 1 0.7249 3.3614 -3.2365 35 1 -1.3211 3.3160 -4.7560 36 1 -3.6018 4.2032 -5.0166 37 1 -5.6834 4.7883 -3.9173 38 1 -5.7108 5.2346 -2.1945 39 1 -4.5725 7.3714 -2.7299 40 1 -4.5452 6.9252 -4.4528 41 1 -5.9218 9.7060 -3.3566 42 1 -5.8954 9.2592 -5.0794 43 1 -7.4296 9.7183 -4.3029 44 1 -3.6680 5.2716 -0.8877 45 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155988991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:05 Heat of formation + Delta-G solvation = -17.639399 kcal Electronic energy + Delta-G solvation = -24179.800795 eV Core-core repulsion = 20708.987082 eV Total energy + Delta-G solvation = -3470.813713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27984 -38.73579 -35.81841 -34.62031 -33.18970 -32.28268 -30.82991 -30.81447 -29.38566 -28.41738 -26.81727 -24.10026 -22.99831 -22.84181 -21.37052 -20.39267 -19.53958 -18.20856 -17.46073 -16.59938 -16.06669 -15.72643 -15.60026 -15.07295 -14.91027 -14.37174 -14.25413 -14.20685 -13.87494 -13.59990 -13.46267 -13.28701 -13.11051 -12.87750 -12.66602 -12.51110 -11.91311 -11.64511 -11.55087 -11.31395 -11.26224 -11.00940 -10.95099 -10.87350 -10.33963 -10.31144 -10.20384 -9.97365 -9.59359 -9.34993 -9.06840 -8.79995 -8.52934 -8.03264 -8.02173 -7.68108 -6.15091 -4.24618 1.21384 1.47686 1.54324 2.25473 3.17474 3.22587 3.29750 3.31961 3.64476 4.01803 4.29778 4.59437 4.73640 4.75186 4.77481 4.85642 4.90350 5.00574 5.11238 5.16625 5.25735 5.32148 5.37713 5.47980 5.69291 5.81547 5.86588 6.10854 6.38082 6.40314 6.47249 6.49527 6.65771 6.67091 6.75934 7.01069 7.10813 7.25450 7.33982 7.36463 7.43964 7.61975 7.84358 7.96140 8.16428 8.70672 8.81947 9.22660 9.43886 10.90174 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.002039 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.495779 B =13726.906948 C =13866.441364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.718 5.718 14 C 0.692 3.308 15 O -0.575 6.575 16 N -0.699 5.699 17 C 0.182 3.818 18 C -0.156 4.156 19 C -0.095 4.095 20 C -0.114 4.114 21 C -0.057 4.057 22 C -0.075 4.075 23 S -0.274 6.274 24 C -0.120 4.120 25 C -0.094 4.094 26 C -0.119 4.119 27 H 0.038 0.962 28 H 0.021 0.979 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.385 0.615 34 H 0.401 0.599 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.122 0.878 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.151 12.268 -14.239 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.453 6.453 16 N -0.346 5.346 17 C 0.086 3.914 18 C -0.177 4.177 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.095 4.095 22 C -0.223 4.223 23 S -0.048 6.048 24 C -0.289 4.289 25 C -0.113 4.113 26 C -0.139 4.139 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.236 0.764 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.118 0.882 44 H 0.140 0.860 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.714 11.561 -12.995 23.441 hybrid contribution 2.836 0.603 -0.803 3.009 sum -12.877 12.164 -13.798 22.454 Atomic orbital electron populations 1.21810 0.98236 0.97927 1.01274 1.21953 0.92710 0.99835 1.02224 1.18726 0.94000 0.88924 0.79907 0.93205 1.21213 0.90642 1.39142 1.06327 0.92120 1.24879 0.98629 0.94787 0.95388 1.69900 1.35133 1.37461 1.09324 0.86443 0.84785 0.77658 0.78163 1.20576 1.21053 1.19905 1.45846 1.13424 1.58324 1.19340 1.16118 0.83673 0.78695 0.82236 1.90887 1.51697 1.64787 1.37888 1.42890 1.12176 1.61143 1.18421 1.17593 0.85031 0.94612 0.94213 1.20835 0.95701 1.04424 0.96700 1.20699 0.94041 0.98599 0.98086 1.19566 0.95845 1.02275 0.93956 1.20200 0.94146 0.92030 1.03166 1.23464 0.94572 0.99422 1.04865 1.86916 1.14557 1.11080 1.92197 1.23359 1.06154 0.95065 1.04291 1.20937 0.94713 0.99123 0.96527 1.21437 0.95476 0.97113 0.99886 0.94317 0.95990 0.93143 0.95111 0.88245 0.92517 0.78253 0.76399 0.86009 0.86133 0.90308 0.90191 0.89827 0.89933 0.90457 0.90527 0.88170 0.86041 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.29 7.04 2.24 -69.08 -0.15 6.89 16 4 H 0.05 1.43 7.57 -51.93 -0.39 1.03 16 5 C -0.53 -13.80 8.73 -34.44 -0.30 -14.10 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.32 11.29 55.43 0.63 -23.70 16 9 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.72 -14.40 5.02 -59.81 -0.30 -14.70 16 14 C 0.69 13.44 6.99 -86.92 -0.61 12.84 16 15 O -0.58 -13.07 10.92 5.29 0.06 -13.01 16 16 N -0.70 -10.42 5.34 -14.22 -0.08 -10.49 16 17 C 0.18 2.65 6.30 -83.69 -0.53 2.12 16 18 C -0.16 -1.84 9.97 -39.40 -0.39 -2.23 16 19 C -0.10 -1.02 9.69 -39.61 -0.38 -1.40 16 20 C -0.11 -1.24 5.14 -104.59 -0.54 -1.78 16 21 C -0.06 -0.51 5.35 -27.88 -0.15 -0.66 16 22 C -0.08 -0.61 5.92 37.16 0.22 -0.39 16 23 S -0.27 -2.36 22.38 -107.50 -2.41 -4.77 16 24 C -0.12 -0.70 10.76 101.05 1.09 0.38 16 25 C -0.09 -1.19 9.69 -39.61 -0.38 -1.58 16 26 C -0.12 -1.82 8.70 -39.39 -0.34 -2.17 16 27 H 0.04 0.86 5.66 -51.93 -0.29 0.57 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.39 6.62 8.56 -40.82 -0.35 6.27 16 34 H 0.40 4.61 8.84 -40.82 -0.36 4.25 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 42 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.14 2.58 6.22 -52.49 -0.33 2.26 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -29.91 378.57 -10.86 -40.77 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.05 Total: 11.29 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.40 Total: -6.38 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.25 Total: -48.89 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.06 Total: -13.01 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -2.41 Total: -4.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.91 -10.86 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155988991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.127 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds